Centre for Crop Health (Operations)


Latest research outputs

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Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales
Kiss, Levente, Vaghefi, Niloofar, Bransgrove, Kaylene, Dearnaley, John D. W., Takamatsu, Susumu, Tan, Yu Pei, Marston, Craig, Liu, Shu-Yan, Jin, Dan-Ni, Adorada, Dante L., Bailey, Jordan, Cabrera de Alvarez, Maria Graciela, Daly, Andrew, Dirchwolf, Pamela Maia, Jones, Lynne, Nguyen, Thuan Dat, Edwards, Jacqueline, Ho, Wellcome, Kelly, Lisa, ..., Braun, Uwe. 2020. "Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales." Frontiers in Microbiology. 11, pp. 1-31. https://doi.org/10.3389/fmicb.2020.01571

Article

Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited
Tan, Yu Pei, Shivas, Roger G., Marney, Thomas S., Edwards, Jacqueline, Dearnaley, John, Jami, Fahimeh and Burgess, Treena I.. 2019. "Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited." Australasian Plant Pathology. 48 (1), pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7

Article

Austropleospora osteospermi gen. et sp. nov. and its host specificity and distribution on Chrysanthemoides monilifera ssp. rotundata in Australia
Morin, Louise, Shivas, R. G., Piper, M. C. and Tan, Y. P.. 2010. "Austropleospora osteospermi gen. et sp. nov. and its host specificity and distribution on Chrysanthemoides monilifera ssp. rotundata in Australia ." Fungal Diversity. 40 (1), pp. 65-74. https://doi.org/10.1007/s13225-009-0007-7

Article

Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews
Thines, Marco, Telle, Sabine, Choi, Young Joon, Tan, Yu Pei and Shivas, Roger G.. 2015. "Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews." IMA Fungus: the global mycological journal. 6 (2), pp. 483-491. https://doi.org/10.5598/imafungus.2015.06.02.12

Article

Belowground crop responses to root herbivory are associated with the community structure of native arbuscular mycorrhizal fungi
Ng, Anna, Wilson, Bree A.L. and Frew, Adam. 2023. "Belowground crop responses to root herbivory are associated with the community structure of native arbuscular mycorrhizal fungi." Applied Soil Ecology. 185. https://doi.org/10.1016/j.apsoil.2022.104797

Article

Belowground ecology of scarabs feeding on grass roots: current knowledge and future directions for management in Australasia
Frew, Adam, Barnett, Kirk, Nielsen, Uffe N., Riegler, Markus and Johnson, Scott N.. 2016. "Belowground ecology of scarabs feeding on grass roots: current knowledge and future directions for management in Australasia." Frontiers in Plant Science. 7 (321), pp. 1-15. https://doi.org/10.3389/fpls.2016.00321

Article

Benefits from below: silicon supplementation maintains legume productivity under predicted climate change scenarios
Johnson, Scott N., Ryalls, James M. W., Gherlenda, Andrew N., Frew, Adam and Hartley, Susan E.. 2018. "Benefits from below: silicon supplementation maintains legume productivity under predicted climate change scenarios." Frontiers in Plant Science. 9, pp. 1-9. https://doi.org/10.3389/fpls.2018.00202

Article

Beyond Nuclear Ribosomal DNA Sequences: Evolution, Taxonomy, and Closest Known Saprobic Relatives of Powdery Mildew Fungi (Erysiphaceae) Inferred From Their First Comprehensive Genome-Scale Phylogenetic Analyses
Vaghefi, Niloofar, Kusch, Stefan, Nemeth, Mark Z., Seress, Diana, Braun, Uwe, Takamatsu, Susumu, Panstruga, Ralph and Kiss, Levente. 2022. "Beyond Nuclear Ribosomal DNA Sequences: Evolution, Taxonomy, and Closest Known Saprobic Relatives of Powdery Mildew Fungi (Erysiphaceae) Inferred From Their First Comprehensive Genome-Scale Phylogenetic Analyses." Frontiers in Microbiology. 13. https://doi.org/10.3389/fmicb.2022.903024

Article

Biocontrol and growth promotion of groundnut by Pseudomonas putida GN1 against soilborne pathogens
Paramasivan, Mookkan, Ramjegathesh, Rajendran, Rajendran, Lingam, Thangam, Algarsamy, Indiragandhi, Pandian, Ravichandran, Venugopal, Johnson, Iruthayasamy, Karthikayan, Gandhi and Karthikeyan, Muthusamy. 2025. "Biocontrol and growth promotion of groundnut by Pseudomonas putida GN1 against soilborne pathogens." Archives of Phytopathology and Plant Protection. 58 (5), pp. 282-301. https://doi.org/10.1080/03235408.2025.2476217

Article

Biodiscovery and the Queensland Plant Pathology Herbarium
Shivas, Roger G., Beasley, Dean R., Bransgrove, Kaylene, Tan, Yu Pei and Bulow, Geoff. 2019. "Biodiscovery and the Queensland Plant Pathology Herbarium." Microbiology Australia. 40 (3), pp. 134-137. https://doi.org/10.1071/MA19036

Article

bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]
Sparks, Adam H., Padgham, Mark, Parsonage, Hugh and Pembleton, Keith. 2017. bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.00411

Software

Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus
Kruse, J., McTaggart, A. R., Dhileepan, K., Musili, P. M., Mutie, F. M., Ntandu, J. E., Edogbanya, P. R. O., Chukwuma, E. C. and Shivas, R. G.. 2021. "Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus." Mycological Progress: international journal of fungal sciences. 20, pp. 191-201. https://doi.org/10.1007/s11557-020-01664-7

Article

Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?
Del Ponte, Emerson M., Sparks, Adam H., Cunniffe, Nik J. and Madden, Laurence V.. 2018. "Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?" 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.

Keynote

Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers
O'Malley, Thomas B., Hay, Frank S., Scott, Jason B., Gent, David H., Shivas, Roger G. and Pethybridge, Sarah J.. 2015. "Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers." Canadian Journal of Plant Pathology. 37 (2), pp. 179-187. https://doi.org/10.1080/07060661.2015.1036122

Article

Causal determinism by plant host identity in arbuscular mycorrhizal fungal community assembly
Frew, Adam, Zheng, Yuxiong, Wang, Zhenyu, Fu, Yanrong and Aguilar-Trigueros, Carlo A.s A.. 2025. "Causal determinism by plant host identity in arbuscular mycorrhizal fungal community assembly." Functional Ecology. 39 (2), pp. 390-402. https://doi.org/10.1111/1365-2435.14715

Article

Cereal and Pulse Crops with Improved Resistance to Pratylenchus thornei Are Needed to Maximize Wheat Production and Expand Crop Sequence Options
Owen, Kirsty J., Clewett, Timothy G., Bell, Kerry L. and Thompson, John P. 2022. "Cereal and Pulse Crops with Improved Resistance to Pratylenchus thornei Are Needed to Maximize Wheat Production and Expand Crop Sequence Options." Agronomy. 12 (3), pp. 1-16. https://doi.org/10.3390/agronomy12030573

Article

Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean
Vaghefi, Niloofar, Adorada, Dante, Adorada, Encarnacion, Kelly, Lisa, Young, Anthony and Sparks, Adam. 2019. "Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean." 2019 Australian Summer Grains Conference: Enduring Farm Profitability (ASCG 2019). Gold Coast, Australia 08 - 10 Jul 2019

Paper

Characterization and Pathogenicity of Soilborne Pathogens in Gloriosa superba: Effects of Single- and Multiple-Pathogen Coinfection on Disease Responses
Dhanabalan, Shanmuga Priya, Johnson, Iruthayasamy, Kumaresan, Parthiban V., Kandasamy, Rajamani, Natesan, Senthil, Periyannan, Sambasivam and Muthusamy, Karthikeyan. 2024. "Characterization and Pathogenicity of Soilborne Pathogens in Gloriosa superba: Effects of Single- and Multiple-Pathogen Coinfection on Disease Responses." Plant Disease: an international journal of applied plant pathology. 108 (11), pp. 3279-3287. https://doi.org/10.1094/PDIS-03-24-0496-RE

Article

Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level
Li, Chengwei, Faino, Luigi, Dong, Lin, Fan, Junmei, Kiss, Levente, de Giovanni, Claudio, Lebeda, Ales, Scott, John, Matsuda, Yoshinori, Toyoda, Hideyoshi, Lindhout, Pim, Visser, Richard G. F., Bonnema, Guusje and Bai, Yuling. 2012. "Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level." Molecular Plant Pathology. 13 (2), pp. 148-159. https://doi.org/10.1111/j.1364-3703.2011.00737.x

Article

Chickpeas! Varietal performance, wet feet and root rot, virus and salinity effects in 2012, Ascochyta management, seed quality, issues in central Queensland and effects of desiccating too early with glyphosate on seed germination
Moore, Kevin, Ryley, Mal and Sharman, Murray. 2013. "Chickpeas! Varietal performance, wet feet and root rot, virus and salinity effects in 2012, Ascochyta management, seed quality, issues in central Queensland and effects of desiccating too early with glyphosate on seed germination." 2013 GRDC Grains Research Update, Northern Region. Goondiwindi, Australia 05 - 06 Mar 2013 Canberra, Australia.

Paper

Climate change may have limited effect on global risk of potato late blight
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert J. and Garrett, Karen A.. 2014. "Climate change may have limited effect on global risk of potato late blight." Global Change Biology. 20 (12), pp. 3621-3631. https://doi.org/10.1111/gcb.12587

Article

Colletotrichum siamense, C. theobromicola and C. queenslandicum, from several plant species and the identification of C. asianum in the Northern Territory, Australia
James, R. S., Ray, J., Tan, Y. P. and Shivas, R. G.. 2014. "Colletotrichum siamense, C. theobromicola and C. queenslandicum, from several plant species and the identification of C. asianum in the Northern Territory, Australia." Australasian Plant Disease Notes. 9 (1), pp. 138-138. https://doi.org/10.1007/s13314-014-0138-x

Article

Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia
Giblin, F. R., Tan, Y. P., Mitchell, R., Coates, L. M., Irwin, J. A. G. and Shivas, R.G.. 2018. "Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia." Australasian Plant Pathology. 47 (3), pp. 269-276. https://doi.org/10.1007/s13313-018-0553-0

Article

Colletotrichum species in Australia
Shivas, Roger G., Tan, Yu Pei, Edwards, Jacqueline, Dinh, Quang, Maxwell, Aaron, Andjic, Vera, Liberato, José R., Anderson, Chris, Beasley, Dean R., Bransgrove, Kaylene, Coates, Lindy M., Cowan, Karren, Daniel, Rosalie, Dean, Jan R., Lomavatu, Mereia Fong, Mercado-Escueta, Doris, Mitchell, Roger W., Thangavel, Raja, Tran-Nguyen, Lucy T T and Weir, Bevan S.. 2016. "Colletotrichum species in Australia." Australasian Plant Pathology. 45 (5), pp. 447-464. https://doi.org/10.1007/s13313-016-0443-2

Article

Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae
Tanaka, Eiji, Shrestha, Bhushan and Shivas, Roger G.. 2020. "Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae." Mycologia. 112 (3), pp. 649-660. https://doi.org/10.1080/00275514.2020.1745524

Article

Common leaf spot of lucerne and the dawn of mycology and plant pathology in Australia
Ryley, Malcolm J.. 2024. "Common leaf spot of lucerne and the dawn of mycology and plant pathology in Australia." Historical Records of Australian Science. 35 (2), pp. 105-115. https://doi.org/10.1071/HR23010

Article

Community assembly of root-colonizing arbuscular mycorrhizal fungi: beyond carbon and into defence?
Frew, Adam, Weinberger, Natascha, Powell, Jeff R., Watts-Williams, Stephanie J. and Aguilar-Trigueros, Carlos A.. 2024. "Community assembly of root-colonizing arbuscular mycorrhizal fungi: beyond carbon and into defence?" The ISME Journal: multidisciplinary journal of microbial ecology. 18 (1). https://doi.org/10.1093/ismejo/wrae007

Article

Comparative toxicity of certain medicinal plants against invasive chili thrips, Thrips parvispinus (Karny)
Elaiyabharathi, T, Satya bhanu, G, Saikumar, T, Suganthi, A, Kavitha, C and Karthikeyan, M. 2025. "Comparative toxicity of certain medicinal plants against invasive chili thrips, Thrips parvispinus (Karny)." Plant Science Today. 12 (1), pp. 1-8. https://doi.org/10.14719/pst.6328

Article

Comparison of disease severity caused by four soil-borne pathogens in winter cereal seedlings
Saad, Ahmed, Macdonald, Bethany, Martin, Anke, Knight, Noel L. and Percy, Cassandra. 2021. "Comparison of disease severity caused by four soil-borne pathogens in winter cereal seedlings." Crop and Pasture Science. 72 (5), pp. 325-334. https://doi.org/10.1071/cp20245

Article

Comparison of measurement methods for determining Macrophomina phaseolina isolate aggressiveness
Adorada, Dante, Adorada, Encarnacion, Gonzales, Precila and Sparks, Adam. 2019. "Comparison of measurement methods for determining Macrophomina phaseolina isolate aggressiveness." 22nd Biennial Australasian Plant Pathology Society Conference (APPS 2019): Strong Foundations, Future Innovations. Melbourne, Australia 25 - 28 Nov 2019

Poster

Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease
Garrett, K. A., Forbes, G. A., Savary, S., Skelsey, P., Sparks, A. H., Valdivia, C., van Bruggen, A. H. C., Willocquet, L., Djurle, A., Duveiller, E., Eckersten, H., Pande, S., Vera Cruz, C. and Yuen, J.. 2011. "Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease." Plant Pathology. 60 (1), pp. 15-30. https://doi.org/10.1111/j.1365-3059.2010.02409.x

Article

Comprehensive analysis of little leaf disease incidence and resistance in eggplant
Muthusamy, Muthusamy, Yogiraj, Gawande Priya, Elaiyabharath, Thiyagarajan, Jesu, Bonipas Antony John, Johnson, Iruthayasamy, Jaffer, Shajith Basha, Dhanabalan, Shanmuga Priya, Boopathi, Narayanan Manikanda, Marimuthu, Subbaiyan, Shobeiri Nejad, Hamid, Adorada, Dante L. and Periyannan, Sambasivam. 2024. "Comprehensive analysis of little leaf disease incidence and resistance in eggplant." BMC Plant Biology. 24, p. 576. https://doi.org/10.1186/s12870-024-05257-4

Article

Concepts, approaches, and avenues for modelling crop health and crop losses
Savary, Serge, Nelson, Andrew D., Djurle, Annika, Esker, Paul D., Sparks, Adam H., Amorim, Lilian, Filho, Armamando Bergamin, Caffi, Tito, Castilla, Nancy, Garrett, Karen, McRoberts, Neil, Rossi, Vitorrio, Yuen, Jonathan and Willocquet, Laetitia. 2018. "Concepts, approaches, and avenues for modelling crop health and crop losses." European Journal of Agronomy. 100, pp. 4-18. https://doi.org/10.1016/j.eja.2018.04.003

Article

Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii
Vaghefi, Niloofar, Pethybridge, Sarah J., Shivas, Roger G. and Nelson, Scot C.. 2016. "Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii." Australasian Plant Disease Notes. 11 (1), pp. 35-37. https://doi.org/10.1007/s13314-016-0223-4

Article

Consistent responses of yield and resistance of wheat cultivars to the root-lesion nematode, Pratylenchus thornei, in the Australian northern subtropical region, but not in the temperate southern region
Owen, Kirsty J., Fanning, Joshua P., Reeves, Karyn L. and Hollaway, Grant J.. 2021. "Consistent responses of yield and resistance of wheat cultivars to the root-lesion nematode, Pratylenchus thornei, in the Australian northern subtropical region, but not in the temperate southern region." Plant Pathology. 70 (8), pp. 1790-1806. https://doi.org/10.1111/ppa.13417

Article

Contrasting effects of commercial and native arbuscular mycorrhizal fungal inoculants on plant biomass allocation, nutrients, and phenolics
Frew, Adam. 2021. "Contrasting effects of commercial and native arbuscular mycorrhizal fungal inoculants on plant biomass allocation, nutrients, and phenolics." Plants, People, Planet. 3 (5), pp. 536-540. https://doi.org/10.1002/ppp3.10128

Article

Crop health and its global impacts on the components of food security
Savary, S., Bregaglio, S., Willocquet, L., Gustafson, D., Mason D'Croz, D., Sparks, A., Castilla, N., Djurle, A., Allinne, C., Sharma, Mamta, Rossi, V., Amorim, L., Bergamin, A., Yuen, J., Esker, P., McRoberts, Neil, Avelino, J., Duveiller, E., Koo, J. and Garrett, K.. 2017. "Crop health and its global impacts on the components of food security." Food Security: the science, sociology and economics of food production and access to food. 9 (2), pp. 311-327. https://doi.org/10.1007/s12571-017-0659-1

Article

Crop rotation for the management of root-lesion nematodes in the northern grain region of Australia
Owen, K., Clewett, T. and Thompson, J.. 2008. "Crop rotation for the management of root-lesion nematodes in the northern grain region of Australia." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.

Paper

Cryptic diversity found in Didymellaceae from Australian native legumes
Keirnan, Elizabeth C., Tan, Yu Pei, Laurence, Matthew H., Mertin, Allison A., Liew, Edward C. Y., Summerell, Brett A. and Shivas, Roger G.. 2021. "Cryptic diversity found in Didymellaceae from Australian native legumes." MycoKeys. 78, pp. 1-20. https://doi.org/10.3897/mycokeys.78.60063

Article

Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches
Li, Ying-Ming, Shivas, Roger G. and Cai, Lei. 2017. "Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches." Scientific Reports. 7. https://doi.org/10.1038/srep43549

Article

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