Centre for Crop Health
Latest research outputs
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A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys
Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium: Paddock to Plates. Adelaide, Australia 04 - 08 Sep 2018 Australia.Presentation
A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W., Knight, Noel L. and Martin, Anke. 2018. "A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses." Crop and Pasture Science. 69 (2), pp. 121-130. https://doi.org/10.1071/CP17240Article
A dual rescaled Mitscherlich model of the simultaneous savings in phosphorus and zinc fertiliser from arbuscular mycorrhizal fungal colonisation of linseed (Linum usitatissimum L.)
Seymour, Nicole P., Edwards, David G. and Thompson, John P.. 2019. "A dual rescaled Mitscherlich model of the simultaneous savings in phosphorus and zinc fertiliser from arbuscular mycorrhizal fungal colonisation of linseed (Linum usitatissimum L.)." Plant and Soil: international journal on plant-soil relationships. 440 (1-2), pp. 97-118. https://doi.org/10.1007/s11104-019-04065-2Article
A dynamic portal for a community-driven, continuously updated classification of Fungi and fungus-like organisms: outlineoffungi.org
Wijayawardene, N. N, Hyde, K. D, Dai, D. Q, Tang, L. Z, Aptroot, A, Castaneda-Ruiz, R. F, Druzhinina, I. S, Cai, F, Ekanayaka, A. H, Erdogdu, M, Fiuza, P. O, Gentekaki, E, Goto, B. T, Haelewaters, D, Hongsanan, S, Jeewon, R, Kirk, P. M, Jayalal, R. G. U, Karunarathna, S. C, ..., Thines, M. 2020. "A dynamic portal for a community-driven, continuously updated classification of Fungi and fungus-like organisms: outlineoffungi.org." Mycosphere Online: Journal of Fungal Biology. 11 (1), pp. 1514-1526. https://doi.org/10.5943/mycosphere/11/1/11Article
A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa
McTaggart, Alistair R., Beasley, Dean R., Wingfield, Michael J., Wood, Alan R., Pretorius, Zakkie K., Drenth, Andre, Shivas, Roger G. and Roux, Jolanda. 2017. "A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa." MycoKeys. 26, pp. 77-83. https://doi.org/10.3897/mycokeys.26.14602Article
A fresh look at grape powdery mildew (Erysiphe necator) A and B genotypes revealed frequent mixed infections and only B genotypes in flag shoot samples
Csikos, Anett, Nemeth, Mark Z., Frenkel, Omer, Kiss, Levente and Vaczy, Kalman Zoltan. 2020. "A fresh look at grape powdery mildew (Erysiphe necator) A and B genotypes revealed frequent mixed infections and only B genotypes in flag shoot samples." Plants. 9 (9), pp. 1-12. https://doi.org/10.3390/plants9091156Article
A metamodeling framework for extending the application domain of process-based ecological models
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert and Garrett, Karen A.. 2011. "A metamodeling framework for extending the application domain of process-based ecological models." Ecosphere. 2 (8). https://doi.org/10.1890/ES11-00128.1Article
A novel artificial immune algorithm for spatial clustering with obstacle constraint and its applications
Sun, Liping, Luo, Yonglong, Ding, Xintao and Zhang, Ji. 2014. "A novel artificial immune algorithm for spatial clustering with obstacle constraint and its applications." Computational Intelligence and Neuroscience. 2014. https://doi.org/10.1155/2014/160730Article
A QTL on the Ca7 chromosome of chickpea affects resistance to the root‑lesion nematode Pratylenchus thornei
Khoo, Kelvin H. P., Sheedy, Jason G., Taylor, Julian D., Croser, Janine S., Hayes, Julie E., Sutton, Tim, Thompson, John P. and Mather, Diane E.. 2021. "A QTL on the Ca7 chromosome of chickpea affects resistance to the root‑lesion nematode Pratylenchus thornei." Molecular Breeding: new strategies in plant improvement. 41 (12), pp. 1-13. https://doi.org/10.1007/s11032-021-01271-8Article
A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)
Kusch, Stefan, Nemeth, Mark Z., Vaghefi, Niloofar, Ibrahim, Heba M.M., Panstruga, Ralph and Kiss, Levente. 2020. "A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)." Molecular Plant-Microbe Interactions. 33 (6), pp. 782-786. https://doi.org/10.1094/MPMI-02-20-0029-AArticle
A systematic review of the effects of arbuscular mycorrhizal fungi on root-lesion nematodes Pratylenchus spp.
Gough, Elaine C., Owen, Kirsty J., Zwart, Rebecca S. and Thompson, John P.. 2020. "A systematic review of the effects of arbuscular mycorrhizal fungi on root-lesion nematodes Pratylenchus spp." Frontiers in Plant Science. 11, pp. 1-14. https://doi.org/10.3389/fpls.2020.00923Article
A triumph of tolerance: managing the threat to wheat production by the root lesion nematode Pratylenchus thornei in the subtropical grain region of eastern Australia
Owen, Kirsty J.. 2022. "A triumph of tolerance: managing the threat to wheat production by the root lesion nematode Pratylenchus thornei in the subtropical grain region of eastern Australia." Sikora, Richard A., Desaeger, Johan and Molendijk, Leendert (ed.) Integrated nematode management: state-of-the-art and visions for the future. Boston, United States. CABI. pp. 13-19Edited book (chapter)
Aboveground herbivory suppresses the arbuscular mycorrhizal symbiosis, reducing plant phosphorus uptake
Frew, Adam. 2021. "Aboveground herbivory suppresses the arbuscular mycorrhizal symbiosis, reducing plant phosphorus uptake." Applied Soil Ecology. 168. https://doi.org/10.1016/j.apsoil.2021.104133Article
Advances in understanding the epidemiology, molecular biology and control of net blotch and the net blotch barley interaction
Martin, Anke, Poudel, Barsha, Dahanayaka, Buddhika Amarasinghe, McLean, Mark S., Snyman, Lisle and Lopez-Ruiz, Franciso J.. 2021. "Advances in understanding the epidemiology, molecular biology and control of net blotch and the net blotch barley interaction." Oliver, Richard (ed.) Achieving durable disease resistance in cereals. Burleigh Dodds Science Publishing Limited. pp. 477-514Edited book (chapter)
An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres
El-Mor, Iman, Fowler, Ryan, Platz, Greg, Sutherland, Mark and Martin, Anke. 2018. "An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres." Plant Disease: an international journal of applied plant pathology. 102 (4), pp. 760-763. https://doi.org/10.1094/PDIS-07-17-0980-REArticle
An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum
Kelly, Alison, Macdonald, Bethany, Percy, Cassandra and Davies, Philip. 2021. "An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum." Journal of Phytopathology. 169 (6), pp. 339-349. https://doi.org/10.1111/jph.12970Article
An integrated approach of rice hull biochar-alternative water management as a promising tool to decrease inorganic arsenic levels and to sustain essential element contents in rice
Kumarathilaka, Prasanna, Bundschuh, Jochen, Seneweera, Saman and Ok, Yong Sik. 2021. "An integrated approach of rice hull biochar-alternative water management as a promising tool to decrease inorganic arsenic levels and to sustain essential element contents in rice." Journal of Hazardous Materials. 405, pp. 1-9. https://doi.org/10.1016/j.jhazmat.2020.124188Article
Arbuscular mycorrhizal fungi acted synergistically with Bradyrhizobium sp. to improve nodulation, nitrogen fixation, plant growth and seed yield of mung bean (Vigna radiata) but increased the population density of the root‑lesion nematode Pratylenchus thornei
Gough, Elaine C., Owen, Kirsty J., Zwart, Rebecca S. and Thompson, John P.. 2021. "Arbuscular mycorrhizal fungi acted synergistically with Bradyrhizobium sp. to improve nodulation, nitrogen fixation, plant growth and seed yield of mung bean (Vigna radiata) but increased the population density of the root‑lesion nematode Pratylenchus thornei." Plant and Soil: international journal on plant-soil relationships. 465 (1-2), pp. 431-452. https://doi.org/10.1007/s11104-021-05007-7Article
Arsenic accumulation in rice (Oryza sativa L.) is influenced by environment and genetic factors
Kumarathilaka, Prasanna, Seneweera, Saman, Meharg, Andrew and Bundschuh, Jochen. 2018. "Arsenic accumulation in rice (Oryza sativa L.) is influenced by environment and genetic factors." Science of the Total Environment. 642, pp. 485-496. https://doi.org/10.1016/j.scitotenv.2018.06.030Article
Arsenic in cooked rice foods: assessing health risks and mitigation options
Kumarathilaka, Prasanna, Seneweera, Saman, Ok, Yong Sik, Meharg, Andrew and Bundschuh, Jochen. 2019. "Arsenic in cooked rice foods: assessing health risks and mitigation options." Environment International. 127, pp. 584-591. https://doi.org/10.1016/j.envint.2019.04.004Article
Arsenic speciation dynamics in paddy rice soil-water environment: sources, physico-chemical, and biological factors - a review
Kumarathilaka, Prasanna, Seneweera, Saman, Meharg, Andrew and Bundschuh, Jochen. 2018. "Arsenic speciation dynamics in paddy rice soil-water environment: sources, physico-chemical, and biological factors - a review." Water Research. 140, pp. 403-414. https://doi.org/10.1016/j.watres.2018.04.034Article
Assessing the resistance to root-lesion nematode (Pratylenchus thornei) in a new collection of wild chickpea (Cicer reticulatum and c. Echinospermum) from Turkey
Reen, Roslyn Anne. 2020. Assessing the resistance to root-lesion nematode (Pratylenchus thornei) in a new collection of wild chickpea (Cicer reticulatum and c. Echinospermum) from Turkey. Masters Thesis Master of Science (Research). University of Southern Queensland. https://doi.org/10.26192/fyjx-ga79Masters Thesis
Assessment of Fusarium pseudograminearum and F. culmorum biomass in seedlings of potential host cereal species
Knight, Noel L. and Sutherland, Mark W.. 2017. "Assessment of Fusarium pseudograminearum and F. culmorum biomass in seedlings of potential host cereal species." Plant Disease: an international journal of applied plant pathology. 101 (12), pp. 2116-2122. https://doi.org/10.1094/PDIS-12-16-1739-REArticle
Assessment of grain quality in terms of functional group response to elevated [CO2], water, and nitrogen using a meta‐analysis: grain protein, zinc, and iron under future climate
Al‐Hadeethi, Ikhlas, Li, Yan, Odhafa, Abdul Kareem H., Seneweera, Saman and Lam, Shu K.. 2019. "Assessment of grain quality in terms of functional group response to elevated [CO2], water, and nitrogen using a meta‐analysis: grain protein, zinc, and iron under future climate." Ecology and Evolution. 9 (13), pp. 7425-7437. https://doi.org/10.1002/ece3.5210Article
Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W. and Martin, Anke. 2018. "Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses." Molecular Breeding: new strategies in plant improvement. 38 (7), pp. 1-8. https://doi.org/10.1007/s11032-018-0838-6Article
Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales
Kiss, Levente, Vaghefi, Niloofar, Bransgrove, Kaylene, Dearnaley, John D. W., Takamatsu, Susumu, Tan, Yu Pei, Marston, Craig, Liu, Shu-Yan, Jin, Dan-Ni, Adorada, Dante L., Bailey, Jordan, Cabrera de Alvarez, Maria Graciela, Daly, Andrew, Dirchwolf, Pamela Maia, Jones, Lynne, Nguyen, Thuan Dat, Edwards, Jacqueline, Ho, Wellcome, Kelly, Lisa, ..., Braun, Uwe. 2020. "Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales." Frontiers in Microbiology. 11, pp. 1-31. https://doi.org/10.3389/fmicb.2020.01571Article
Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited
Tan, Yu Pei, Shivas, Roger G., Marney, Thomas S., Edwards, Jacqueline, Dearnaley, John, Jami, Fahimeh and Burgess, Treena I.. 2019. "Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited." Australasian Plant Pathology. 48 (1), pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7Article
Bioenergy from cotton industry wastes: a review and potential
Hamawand, Ihsan, Sandell, Gary, Pittaway, Pam, Chakrabarty, Sayan, Yusaf, Talal, Chen, Guangnan, Seneweera, Saman, Al-Lwayzy, Saddam, Bennett, John and Hopf, Joshua. 2016. "Bioenergy from cotton industry wastes: a review and potential." Renewable and Sustainable Energy Reviews. 66, pp. 435-448. https://doi.org/10.1016/j.rser.2016.08.033Article
bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]
Sparks, Adam H., Padgham, Mark, Parsonage, Hugh and Pembleton, Keith. 2017. bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.00411Software
Botryosphaeriaceae in Australian cereal grains: An overview
Adorada, Dante L.. 2017. "Botryosphaeriaceae in Australian cereal grains: An overview." Science Protecting Plant Health Conference (2017). Brisbane, Australia 25 Aug 2017 Australia.Presentation
Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus
Kruse, J., McTaggart, A. R., Dhileepan, K., Musili, P. M., Mutie, F. M., Ntandu, J. E., Edogbanya, P. R. O., Chukwuma, E. C. and Shivas, R. G.. 2021. "Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus." Mycological Progress: international journal of fungal sciences. 20, pp. 191-201. https://doi.org/10.1007/s11557-020-01664-7Article
Can bacterial plant pathogens be written off from grain discolourations observed on rice in northern Queensland?
Buyoyu, Peter, Weeraratne, Nirodha, Adorada, Dante L. and Ash, Gavin J.. 2019. "Can bacterial plant pathogens be written off from grain discolourations observed on rice in northern Queensland?" 22nd Biennial Australasian Plant Pathology Society Conference (APPS 2019): Strong Foundations, Future Innovations. Melbourne, Australia 25 - 28 Nov 2019 Australia.Poster
Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?
Del Ponte, Emerson M., Sparks, Adam H., Cunniffe, Nik J. and Madden, Laurence V.. 2018. "Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?" 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.Keynote
Carbon dioxide (CO2) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries
Zhu, Chunwu, Kobayashi, Kazuhiko, Loladze, Irakli, Zhu, Jianguo, Jiang, Qian, Xu, Xi, Liu, Gang, Seneweera, Saman, Ebi, Kristie L., Drewnowski, Adam, Fukagawa, Naomi K. and Ziska, Lewis H.. 2018. "Carbon dioxide (CO2) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries." Science Advances. 4 (5), pp. 1-8. https://doi.org/10.1126/sciadv.aaq1012Article
Cereal and Pulse Crops with Improved Resistance to Pratylenchus thornei Are Needed to Maximize Wheat Production and Expand Crop Sequence Options
Owen, Kirsty J., Clewett, Timothy G., Bell, Kerry L. and Thompson, John P. 2022. "Cereal and Pulse Crops with Improved Resistance to Pratylenchus thornei Are Needed to Maximize Wheat Production and Expand Crop Sequence Options." Agronomy. 12 (3), pp. 1-16. https://doi.org/10.3390/agronomy12030573Article
Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures
Sheedy, J. G., McKay, A. C., Lewis, J., Vanstone, V. A., Fletcher, S., Kelly, A. and Thompson, J. P.. 2015. "Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures." Australasian Plant Pathology. 44 (2), pp. 175-182. https://doi.org/10.1007/s13313-014-0333-4Article
Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period
Page, Kathryn L., Dang, Yash P., Dalal, Ram C., Reeves, Steven, Thomas, Greg, Wang, Weijin and Thompson, John P.. 2019. "Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period." Soil and Tillage Research. 194, pp. 1-8. https://doi.org/10.1016/j.still.2019.104319Article
Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean
Vaghefi, Niloofar, Adorada, Dante, Adorada, Encarnacion, Kelly, Lisa, Young, Anthony and Sparks, Adam. 2019. "Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean." 2019 Australian Summer Grains Conference: Enduring Farm Profitability (ASCG 2019). Gold Coast, Australia 08 - 10 Jul 2019Paper
Characterization of Pyrenophora teres isolates and mapping of virulence genes
Dahanayaka, Buddhika Amarasinghe. 2021. Characterization of Pyrenophora teres isolates and mapping of virulence genes. PhD Thesis Doctor of Philosophy. University of Southern Queensland. https://doi.org/10.26192/q6xw3PhD Thesis
Characterization of virulence in Pyrenophora teres f. maculata
Sharma, Rudrakshi. 2021. Characterization of virulence in Pyrenophora teres f. maculata. PhD by Publication Doctor of Philosophy. University of Southern Queensland. https://doi.org/10.26192/q71vzPhD by Publication
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