Discover gene specific local co-regulations from time-course gene expression data

Article


Zhang, Ji, Gao, Qigang and Wang, Hai. 2008. "Discover gene specific local co-regulations from time-course gene expression data." Journal of Scientific Programming. 16 (1), pp. 31-47. https://doi.org/10.3233/SPR-2008-0243
Article Title

Discover gene specific local co-regulations from time-course gene expression data

ERA Journal ID45087
Article CategoryArticle
AuthorsZhang, Ji (Author), Gao, Qigang (Author) and Wang, Hai (Author)
Journal TitleJournal of Scientific Programming
Journal Citation16 (1), pp. 31-47
Number of Pages17
Year2008
Place of PublicationAmsterdam, Netherlands
ISSN1058-9244
1875-919X
Digital Object Identifier (DOI)https://doi.org/10.3233/SPR-2008-0243
Web Address (URL)http://iospress.metapress.com/content/w16w02t58758/?p=c6223224170a4406a357a421d2ec3fa3&pi=3
Abstract

[Abstract]: Discovering gene co-regulatory relationships is one of most important research in DNA microarray data analysis. The problem of gene specific co-regulation discovery is to, for a particular gene of interest (called target gene), identify the condition subsets where strong gene co-regulations of the target gene are observed and its co-regulated genes in these condition subsets. The co-regulations are local in the sense that they occur in some subsets of full experimental conditions. The study on this problem can contribute to better understanding and characterizing the target gene during the biological activity involved. In this paper, we propose an innovative method for finding gene specific co-regulations using genetic algorithm (GA). A sliding window is used to delimit the allowed length of conditions in which gene co-regulations occur and an \textit{ad hoc} GA, called the progressive GA, is performed in each window position to find those condition subsets having high fitness. It is called progressive because the initial population for the GA in a window position inherits the top-ranked individuals obtained in its preceding window position, enabling the GA to achieve a better accuracy than the non-progressive algorithm. kNN Lookup Table is utilized to substantially speed up fitness evaluation in the GA. Experimental results with a real-life gene expression data demonstrate the efficiency and effectiveness of our technique in discovering gene specific co-regulations.

Keywordsgenes; gene co-regulatory relationships; gene specific co-regulation
ANZSRC Field of Research 2020469999. Other information and computing sciences not elsewhere classified
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Byline AffiliationsDalhousie University, Canada
Saint Mary's University, Canada
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Goh, Wee Pheng, Tao, Xiaohui, Zhang, Ji and Yong, Jianming. 2017. "Mining drug properties for decision support in dental clinics." Kim, J., Shim, K., Cao, L., Lee, J., Lin, X. and Moon, Y. (ed.) 21st Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2017). Jeju, South Korea 23 - 26 May 2017 Germany. https://doi.org/10.1007/978-3-319-57529-2_30
Coupling topic modelling in opinion mining for social media analysis
Zhou, Xujuan, Tao, Xiaohui, Rahman, Md Mostafijur and Zhang, Ji. 2017. "Coupling topic modelling in opinion mining for social media analysis." 2017 IEEE/WIC/ACM International Conference on Web Intelligence (WI 2017). Leipzig, Germany 23 - 26 Aug 2017 New York, United States. https://doi.org/10.1145/3106426.3106459
A Fast Fourier Transform-Coupled Machine Learning-Based Ensemble Model for Disease Risk Prediction Using a Real-Life Dataset
Lafta, Raid, Zhang, Ji, Tao, Xiaohui, Li, Yan, Abbas, Wessam, Luo, Yonglong, Chen, Fulong, Tseng, Vincent S., Lafta, Raid, Zhang, Ji, Tao, Xiaohui, Li, Yan, Abbas, Wessam, Luo, Yonglong, Chen, Fulong and Tseng, Vincent S.. 2017. "A Fast Fourier Transform-Coupled Machine Learning-Based Ensemble Model for Disease Risk Prediction Using a Real-Life Dataset." Kim, Jinho, Shim, Kyuseok, Cao, Longbing, Lee, Jae-Gil, Lin, Xuemin and Moon, Yang-Sae (ed.) 21st Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2017). Jeju, South Korea 23 - 26 May 2017 Switzerland. https://doi.org/10.1007/978-3-319-57454-7_51
Coupling a fast fourier transformation with a machine learning ensemble model to support recommendations for heart disease patients in a telehealth environment
Zhang, Ji, Lafta, Raid, Tao, Xiaohui, Li, Yan, Chen, Fulong, Luo, Yonglong and Zhu, Xiaodong. 2017. "Coupling a fast fourier transformation with a machine learning ensemble model to support recommendations for heart disease patients in a telehealth environment." IEEE Access. 5 (1), pp. 10674-10685. https://doi.org/10.1109/ACCESS.2017.2706318
Detecting global outliers from large distributed databases
Zhang, Ji, Cao, Jie and Zhu, Xiaodong. 2012. "Detecting global outliers from large distributed databases." Liu, Yanbing, Yue, Shigang, Leung, Frank H. F., Zhao, Guofeng and Wang, Lipo (ed.) 9th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD 2012). Chongqing, China 29 - 31 May 2012 Piscataway, NJ. United States. https://doi.org/10.1109/FSKD.2012.6233948
GO-PEAS: a scalable yet accurate grid-based outlier detection method using novel pruning searching techniques
Li, Hongzhou, Zhang, Ji, Luo, Yonglong, Chen, Fulong and Chang, Liang. 2016. "GO-PEAS: a scalable yet accurate grid-based outlier detection method using novel pruning searching techniques." Ray, T., Sarker, R. and Li, X. (ed.) 2nd Australasian Conference on Artificial Life and Computational Intelligence (ACALCI 2016). Canberra, Australia 02 - 05 Feb 2016 Switzerland. Springer. https://doi.org/10.1007/978-3-319-28270-1_11
A survey of itemset mining
Fournier-Viger, Philippe, Lin, Jerry Chun-Wei, Vo, Bay, Chi, Tin Truong, Zhang, Ji and Le, Hoai Bac. 2017. "A survey of itemset mining." WIREs Data Mining and Knowledge Discovery. 7 (4). https://doi.org/10.1002/widm.1207
Settlement analyses of underground circular tunneling in soft clay
Shiau, J. S., Sams, M. S., Zhang, J. and Kemp, R. J.. 2014. "Settlement analyses of underground circular tunneling in soft clay." Yoo, Chungsik, Park, Seong-Wan, Kim, Bumjoo and Ban, Hoki (ed.) 8th International Symposium on Geotechnical Aspects of Underground Construction in Soft Ground (TC204 ISSMGE IS-SEOUL 2014). Seoul, Korea 25 - 27 Aug 2014 Netherlands. https://doi.org/10.1201/b17240-63
IRS-HD: an intelligent personalized recommender system for heart disease patients in a tele-health environment
Lafta, Raid, Zhang, Ji, Tao, Xiaohui, Li, Yan and Tseng, Vincent S.. 2016. "IRS-HD: an intelligent personalized recommender system for heart disease patients in a tele-health environment." Li, Jinyan, Li, Xue, Wang, Shuliang, Li, Jianxin and Sheng, Quan Z. (ed.) 12th International Conference on Advanced Data Mining and Applications (ADMA 2016). Gold Coast, QLD, Australia 12 - 15 Dec 2016 Switzerland. https://doi.org/10.1007/978-3-319-49586-6_58
Positive Influence Dominating Set Games
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui, Zhang, Ji, Yi, Xun and Yong, Jianming. 2014. "Positive Influence Dominating Set Games." Hou, Jiang-Liang, Trappey, Amy J. C., Wu, Chien-Wei, Chang, Kuo-Hao, Liao, Chuing-Shou, Shen, Wei-Ming, Barthes, Jean-Paul and Luo, Jun-Zhou (ed.) 18th IEEE International Conference on Computer Supported Cooperative Work in Design (CSCWD 2014). Hsinchu, Taiwan 21 - 23 May 2014 United States. https://doi.org/10.1109/CSCWD.2014.6846890
PFrauDetector: a parallelized graph mining approach for efficient fraudulent phone call detection
Ying, Josh Jia-Ching, Zhang, Ji, Huang, Che-Wei, Chen, Kuan-Ta and Tseng, Vincent S.. 2016. "PFrauDetector: a parallelized graph mining approach for efficient fraudulent phone call detection." 22nd IEEE International Conference on Parallel and Distributed Systems (ICPADS 2016). Wuhan, China 13 - 16 Dec 2016 United States. https://doi.org/10.1109/ICPADS.2016.0140
NSSSD: a new semantic hierarchical storage for sensor data
Gheisari, Mehdi, Movassagh, Ali Akbar, Qin, Yongrui, Yong, Jianming, Tao, Xiaohui, Zhang, Ji and Shen, Haifeng. 2016. "NSSSD: a new semantic hierarchical storage for sensor data." 20th IEEE International Conference on Computer Supported Cooperative Work in Design (CSCWD 2016). Nanchang, China 04 - 06 May 2016 United States. https://doi.org/10.1109/CSCWD.2016.7565984
Adopting hybrid descriptors to recognise leaf images for automatic plant specie identification
Al-kharaz, Ali A., Tao, Xiaohui, Zhang, Ji and Lafta, Raid. 2016. "Adopting hybrid descriptors to recognise leaf images for automatic plant specie identification." Li, Jinyan, Li, Xue, Wang, Shuliang, Li, Jianxin and Sheng, Quan Z. (ed.) 12th International Conference on Advanced Data Mining and Applications (ADMA 2016). Gold Coast, QLD, Australia 12 - 15 Dec 2016 Switzerland. https://doi.org/10.1007/978-3-319-49586-6_15
Sentiment analysis for depression detection on social networks
Tao, Xiaohui, Zhou, Xujuan, Zhang, Ji and Yong, Jianming. 2016. "Sentiment analysis for depression detection on social networks." Li, Jinyan, Li, Xue, Wang, Xue, Li, Jianxin and Sheng, Quan Z. (ed.) 12th International Conference on Advanced Data Mining and Applications (ADMA 2016). Gold Coast, QLD, Australia 12 - 15 Dec 2016 Switzerland. https://doi.org/10.1007/978-3-319-49586-6_59
Anonymity-based privacy preserving network data publication
Liu, Peng, Li, Yidong, Sang, Yingpeng and Zhang, Ji. 2016. "Anonymity-based privacy preserving network data publication." 15th IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom 2016). Tianjin, China 23 - 26 Aug 2016 Los Alamitos, CA. United States. https://doi.org/10.1109/TrustCom.2016.0144
An intelligent recommender system based on predictive analysis in telehealthcare environment
Lafta, Raid, Zhang, Ji, Tao, Xiaohui, Li, Yan, Tseng, Vincent S., Luo, Yonglong and Chen, Fulong. 2016. "An intelligent recommender system based on predictive analysis in telehealthcare environment." Web Intelligence. 14 (4), pp. 325-336. https://doi.org/10.3233/WEB-160348
An Intelligent Recommender System based on Short-term Risk Prediction for Heart Disease Patients
Lafta, Raid, Zhang, Ji, Tao, Xiaohui, Li, Yan and Tseng, Vincent S.. 2015. "An Intelligent Recommender System based on Short-term Risk Prediction for Heart Disease Patients." 4th International Workshop on Web Personalization, Recommender Systems and Social Media (WPRSM2015), Joint with WI-IAT 2015. Singapore 06 - 09 Dec 2015 Singapore. https://doi.org/10.1109/WI-IAT.2015.47
A study of drug interaction for personalised decision support in dental clinics
Goh, Wee Pheng, Tao, Xiaohui, Zhang, Ji and Yong, Jianming. 2015. "A study of drug interaction for personalised decision support in dental clinics." 2015 IEEE/WIC/ACM International Conference on Web Intelligence and Intelligent Agent Technology (WI-IAT 2015). Singapore 06 - 09 Dec 2015 https://doi.org/10.1109/WI-IAT.2015.28
Efficient Algorithms for Scheduling XML Data in a Mobile Wireless Broadcast Environment
Qin, Yongrui, Wang, Hua, Zhang, Ji, Tao, Xiaohui, Zhang, Wei Emma, Taylor, Kerry and Sheng, Quan Z.. 2015. "Efficient Algorithms for Scheduling XML Data in a Mobile Wireless Broadcast Environment." 21st IEEE International Conference on Parallel and Distributed Systems (ICPADS 2015). Melbourne, Australia 14 - 17 Dec 2015 Australia. https://doi.org/10.1109/ICPADS.2015.96
Fast local neighborhood search algorithm for the no-wait flow shop scheduling with total flow time minimization
Qi, Xuemei, Wang, Hongtao, Zhu, Haihong, Zhang, Ji, Chen, Fulong and Yang, Jie. 2016. "Fast local neighborhood search algorithm for the no-wait flow shop scheduling with total flow time minimization." International Journal of Production Research. 54 (16), pp. 4957-4972. https://doi.org/10.1080/00207543.2016.1150615
Decision support systems for adoption in dental clinics: a survey
Goh, Wee Pheng, Tao, Xiaohui, Zhang, Ji and Yong, Jianming. 2016. "Decision support systems for adoption in dental clinics: a survey." Knowledge-Based Systems. 104, pp. 195-206. https://doi.org/10.1016/j.knosys.2016.04.022
A standardized design methodology for complex digital logic components of cyber-physical systems
Chen, F., Ye, H., Yang, J., Huang, Y., Zhang, J., Qi, X., Zhao, C., Zhu, J. and Zhou, W.. 2015. "A standardized design methodology for complex digital logic components of cyber-physical systems." Microprocessors and Microsystems. 39 (8), pp. 1245-1254. https://doi.org/10.1016/j.micpro.2015.08.012
Explore interregional EEG correlations changed by sport training using feature selection
Gao, Jia, Wang, Wei and Zhang, Ji. 2016. "Explore interregional EEG correlations changed by sport training using feature selection." Computational Intelligence and Neuroscience. 2016. https://doi.org/10.1155/2016/6184823
On efficient and robust anonymization for privacy protection on massive streaming categorical information
Zhang, Ji, Li, Hongzhou, Liu, Xuemei, Luo, Yonglong, Chen, Fulong, Wang, Hua and Chang, Liang. 2017. "On efficient and robust anonymization for privacy protection on massive streaming categorical information." IEEE Transactions on Dependable and Secure Computing. 14 (5), pp. 507-520. https://doi.org/10.1109/TDSC.2015.2483503
Finding weighted positive influence dominating set to make impact to negatives: a study on online social networks in the new millennium
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui and Zhang, Ji. 2014. "Finding weighted positive influence dominating set to make impact to negatives: a study on online social networks in the new millennium." Kaur, Harleen and Tao, Xiaohui (ed.) ICTs and the millennium development goals: a United Nations perspective. New York, NY. United States. Springer. pp. 67-81
A novel artificial immune algorithm for spatial clustering with obstacle constraint and its applications
Sun, Liping, Luo, Yonglong, Ding, Xintao and Zhang, Ji. 2014. "A novel artificial immune algorithm for spatial clustering with obstacle constraint and its applications." Computational Intelligence and Neuroscience. 2014. https://doi.org/10.1155/2014/160730
A dynamic subspace anomaly detection method using generic algorithm for streaming network data
Zhang, Ji and Li, Hongzhou. 2015. "A dynamic subspace anomaly detection method using generic algorithm for streaming network data." Gupta, Manish (ed.) Handbook of research on emerging developments in data privacy. Hershey, PA. United States. IGI Global. pp. 403-425
Detecting anomalies from big network traffic data using an adaptive detection approach
Zhang, Ji, Li, Hongzhou, Gao, Qigang, Wang, Hai and Luo, Yonglong. 2015. "Detecting anomalies from big network traffic data using an adaptive detection approach." Information Sciences. 318, pp. 91-110. https://doi.org/10.1016/j.ins.2014.07.044
Energy effective congestion control for multicast with network coding in wireless ad hoc network
Zhao, Chuanxin, Luo, Yonglong, Chen, Fulong, Zhang, Ji and Wang, Ruchuan. 2014. "Energy effective congestion control for multicast with network coding in wireless ad hoc network." Mathematical Problems in Engineering. https://doi.org/10.1155/2014/135945
Telemedicine and Telemonitoring in Healthcare
Alsgaer, Salmah F. A., Tao, Xiaohui, Zhang, Ji, Wang, Hua and Guo, Zhi. 2013. "Telemedicine and Telemonitoring in Healthcare." Imamura, Kazayuki, Usui, Shiro and Shirao, Tomoaki (ed.) 2013 International Conference on Brain and Health Informatics (BHI 2013). Maebashi, Japan 29 - 31 Oct 2013 Germany. https://doi.org/10.1007/978-3-319-02753-1_20
SIMS: Self-adaptive Intelligent Monitoring System for supporting home-based heart failure patients
Wang, Hua, Zhang, Ji, Soar, Jeffrey, Tao, Xiaohui and Huang, Wei. 2013. "SIMS: Self-adaptive Intelligent Monitoring System for supporting home-based heart failure patients." Biswas, Jit, Kobayashi, Hisato, Wong, Lawrence, Abdulrazak, Bessam and Mokhtari, Mounir (ed.) 11th International Conference on Smart Homes and Health Telematics (ICOST 2013): Inclusive Society: Health and Wellbeing in Ageing-Friendly Community: eHealth, Telemedicine, Chronic Disease Management and Care at Home. Singapore 19 - 21 Jun 2013 Heidelberg, Germany. https://doi.org/10.1007/978-3-642-39470-6_43
Minimising k-dominating set in arbitrary network graphs
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui, Zhang, Ji and Zhang, Jinhua. 2013. "Minimising k-dominating set in arbitrary network graphs." Motoda, Hiroshi, Wu, Zhaohui, Cao, Longbing, Zaiane, Osmar, Yao, Min and Wang, Wei (ed.) 9th International Conference on Advanced Data Mining and Applications (ADMA 2013). Hangzhou, China 14 - 16 Dec 2013 Heidelberg, Germany. https://doi.org/10.1007/978-3-642-53917-6_11
An efficient and robust privacy protection technique for massive streaming choice-based information
Zhang, Ji, Liu, Xuemei and Luo, Yonglong. 2013. "An efficient and robust privacy protection technique for massive streaming choice-based information." He, Qi and Iyengar, Arun (ed.) 22nd ACM International Conference on Information and Knowledge Management (CIKM 2013). San Francisco, United States 27 Oct - 01 Nov 2013 New York, NY. United States. https://doi.org/10.1145/2505515.2507816
SODIT: An innovative system for outlier detection using multiple localized thresholding and interactive feedback
Zhang, Ji, Wang, Hua, Tao, Xiaohui and Sun, Lili. 2013. "SODIT: An innovative system for outlier detection using multiple localized thresholding and interactive feedback." 29th IEEE International Conference on Data Engineering (ICDE 2013). Brisbane, Australia 08 - 11 Apr 2013 Piscataway, NJ. United States. https://doi.org/10.1109/ICDE.2013.6544945
Finding a weighted positive influence dominating set in e-learning social networks
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui, Zhang, Ji and Zhu, Guohun. 2013. "Finding a weighted positive influence dominating set in e-learning social networks." International Journal of Computers and Technology. 10 (10), pp. 2136-2145.
A self-stabilizing algorithm for finding a minimal positive influence dominating set in social networks
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui and Zhang, Ji. 2013. "A self-stabilizing algorithm for finding a minimal positive influence dominating set in social networks." Wang, Hua and Zhang, Rui (ed.) 24th Australasian Database Conference (ADC 2013). Adelaide, Australia 29 Jan - 01 Feb 2013 Sydney, Australia.
Mapping semantic knowledge for unsupervised text categorisation
Tao, Xiaohui, Li, Yuefeng, Zhang, Ji and Yong, Jianming. 2013. "Mapping semantic knowledge for unsupervised text categorisation." Wang, Hua and Rui, Zhang (ed.) 24th Australasian Database Conference (ADC 2013). Adelaide, Australia 29 Jan - 01 Feb 2013 Sydney, Australia.
Outlier detection from large distributed databases
Zhang, Ji, Wang, Hua and Tao, Xiaohui. 2014. "Outlier detection from large distributed databases." World Wide Web. 17 (4), pp. 539-568. https://doi.org/10.1007/s11280-013-0218-4
A Self-Stabilizing Protocol for Minimal Weighted Dominating Sets in Arbitrary Networks
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui and Zhang, Ji. 2013. "A Self-Stabilizing Protocol for Minimal Weighted Dominating Sets in Arbitrary Networks." Shen, Weiming, Li, Weidong, Barthes, Jean-Paul, Luo, Junzhou, Zhu, Haibin, Yong, Jianming and Li, Xiaoping (ed.) IEEE 17th International Conference on Computer Supported Cooperative Work in Design (CSCWD 2013). Whistler, Canada 27 - 29 Jun 2013 United States. https://doi.org/10.1109/CSCWD.2013.6581012
Advancements of outlier detection: a survey
Zhang, Ji. 2013. "Advancements of outlier detection: a survey." ICST Transactions on Scalable Information Systems. 13 (1), pp. 1-26. https://doi.org/10.4108/trans.sis.2013.01-03.e2
An innovative outlier detection method using localized thresholds
Zhang, Ji, Cao, Jie and Zhu, Xiaodong. 2012. "An innovative outlier detection method using localized thresholds." Data and Knowledge Engineering. https://doi.org/10.1007/978-3-642-34679-8-7
Efficient and effective filtering of duplication detection in large database applications
Zhang, Ji. 2012. "Efficient and effective filtering of duplication detection in large database applications." Journal of Software. 7 (11), pp. 2424-2436. https://doi.org/10.4304/jsw.7.11.2424-2436
A self-stabilizing algorithm for finding a minimal K-dominating set in general networks
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui and Zhang, Ji. 2012. "A self-stabilizing algorithm for finding a minimal K-dominating set in general networks." Xiang, Yang, Pathan, Mukaddim, Tao, Xiaohui and Wan g, Hua (ed.) 3rd International Conference on Data and Knowledge Engineering (ICDKE 2012). Fujian, China 21 - 23 Nov 2012 Berlin, Germany. Springer. https://doi.org/10.1007/978-3-642-34679-8_8
Optimal timepoint sampling in high-throughput gene expression experiments
Rosa, Bruce A., Zhang, Ji, Major, Ian T., Qin, Wensheng and Chen, Jin. 2012. "Optimal timepoint sampling in high-throughput gene expression experiments." Bioinformatics. 28 (21), pp. 2773-2781. https://doi.org/10.1093/bioinformatics/bts511
Positive influence dominating set in e-learning social networks
Wang, Guangyuan, Wang, Hua, Tao, Xiaohui and Zhang, Ji. 2011. "Positive influence dominating set in e-learning social networks." Leung, H., Popescu, E., Cao, Y., Lau, R. W. H. and Nejdl, W. (ed.) 10th International Conference on Web-Based Learning (ICWL 2011): Advances in Web-Based Learning. Hong Kong, China 08 - 10 Dec 2011 Berlin, Germany. https://doi.org/10.1007/978-3-642-25813-8_9
A process provenance service system for scientific data analysis and sharing
Liu, Qing, Zhang, Ji, Forbes, James, Xu, Kai and Nair, Dinesh. 2011. "A process provenance service system for scientific data analysis and sharing." Zhang, Ji and Livraga, Gionvanni (ed.) 2nd International Conference on Data and Knowledge Engineering (ICDKE 2011). Milan, Italy 06 - 08 Sep 2011 Piscataway, NJ. United States. https://doi.org/10.1109/ICDKE.2011.6053921
Privacy aware access control with trust management in web service
Li, Min, Sun, Xiaoxun, Wang, Hua, Zhang, Yanchun and Zhang, Ji. 2011. "Privacy aware access control with trust management in web service." World Wide Web. 14 (4), pp. 407-430. https://doi.org/10.1007/s11280-011-0114-8
DISTRO: a system for detecting global outliers from distributed data streams with privacy protection
Zhang, Ji, Dekeyser, Stijn, Wang, Hua and Shu, Yanfeng. 2010. "DISTRO: a system for detecting global outliers from distributed data streams with privacy protection." Kitagawa, Hiroyuki, Ishikawa, Yoshiharu, Li, Qing and Watanabe, Chiemi (ed.) DASFAA 2010: 15th International Conference on Database Systems for Advanced Applications. Tsukuba, Japan 01 - 04 Apr 2010 Germany. Springer. https://doi.org/10.1007/978-3-642-12098-5_54
On memory and I/O efficient duplication detection for multiple self-clean data sources
Zhang, Ji, Shu, Yanfeng and Wang, Hua. 2010. "On memory and I/O efficient duplication detection for multiple self-clean data sources." Yoshikawa, M. (ed.) DASFAA 2010: 15th International Conference on Database Systems for Advanced Applications. Tsukuba, Japan 01 - 04 Apr 2010 Germany. Springer. https://doi.org/10.1007/978-3-642-14589-6_14
An information-driven framework for image mining
Zhang, Ji, Hsu, Wynne and Lee, Mong Li. 2001. "An information-driven framework for image mining." Mayr, Heinrich C., Lazansky, Jiri, Quirchmayr, Gerald and Vogel, Pavel (ed.) 12th International Conference on Database and Expert Systems Applications (DEXA'01). Munich, Germany 03 - 05 Sep 2001 Germany. Springer. https://doi.org/10.1007/3-540-44759-8_24
Building XML data warehouse based on frequent patterns in user queries
Zhang, Ji, Ling, Tok Wang, Bruckner, Robert and Tjoa, A. Min. 2003. "Building XML data warehouse based on frequent patterns in user queries." Kambayahsi, Yahiko, Mohania, Mukesh K. and Wob, Wolfram (ed.) 5th International Conference on Data Warehousing and Knowledge Discovery (DaWaK'03). Prague, Czech Republic 03 - 05 Sep 2003 Germany. Springer. https://doi.org/10.1007/978-3-540-45228-7_11
On efficient and effective association rule mining from XML data
Zhang, Ji, Ling, Tok Wang, Bruckner, Robert, Tjoa, A. Min and Liu, Han. 2004. "On efficient and effective association rule mining from XML data." Galindo, Fernando, Takizawa, Makoto and Traunmuller, Roland (ed.) 15th International Conference on Database and Expert Systems Applications (DEXA'04). Zaragoza, Spain 30 Aug - 03 Sep 2004 Germany. Springer. https://doi.org/10.1007/978-3-540-30075-5_48
PC-filter: a Robust filtering technique for duplicate record detection in large databases
Zhang, Ji, Ling, Tok Wang, Bruckner, Robert and Liu, Han. 2004. "PC-filter: a Robust filtering technique for duplicate record detection in large databases." Galindo, Fernando, Takizawa, Makoto and Traunmuller, Roland (ed.) 15th International Conference on Database and Expert Systems Applications (DEXA'04). Zaragoza, Spain 30 Aug - 03 Sep 2004 Germany. Springer. https://doi.org/10.1007/978-3-540-30075-5_47
Gene specific co-regulation discovery: an improved approach
Zhang, Ji, Liu, Qing and Xu, Kai. 2009. "Gene specific co-regulation discovery: an improved approach." Allen, G., Nabrzyski, J., Seidel, E., van Albada, G. D., Dongarra, J. and Sloot, P. M. A. (ed.) 2009 International Conference on Computational Science (ICCS 2009): Compute. Discover. Innovate.. Baton Rouge, United States of America 25 - 27 May 2009 Germany. Springer.
Detecting projected outliers in high-dimensional data streams
Zhang, Ji, Gao, Qigang, Wang, Hai, Liu, Qing and Xu, Kai. 2009. "Detecting projected outliers in high-dimensional data streams." Bhowmick, Sourav S., Kung, Josef and Wagner, Roland (ed.) DEXA 2009: 20th International Conference on Database and Expert Systems Applications. Linz, Austria Germany. Springer. https://doi.org/10.1007/978-3-642-03573-9_53
Web service management system for bioinformatics research: a case study
Xu, Kai, Yu, Qi, Liu, Qing, Zhang, Ji and Bouguettaya, Athman. 2011. "Web service management system for bioinformatics research: a case study." Service Oriented Computing and Applications. 5 (1), pp. 1-15. https://doi.org/10.1007/s11761-011-0076-9
Detecting anomalies from high-dimensional wireless network data streams: a case study
Zhang, Ji, Gao, Qigang, Wang, Hai and Wang, Hua. 2011. "Detecting anomalies from high-dimensional wireless network data streams: a case study." Soft Computing. 15 (6), pp. 1195-1215. https://doi.org/10.1007/s00500-010-0575-1
Privacy-preserving protocols for string matching
Luo, Yonglong, Shi, Lei, Zhang, Caiyun and Zhang, Ji. 2010. "Privacy-preserving protocols for string matching." Xiang, Yang, Samarati, Pierangela, Hu, Jiankun, Zhou, Wanlei and Sadeghi, Ahmad-Reza (ed.) NSS 2010: 4th International Conference on Network and System Security . Melbourne, Australia 01 - 03 Sep 2010 Piscataway, NJ. United States. https://doi.org/10.1109/NSS.2010.24
An efficient and effective duplication detection method in large database applications
Zhang, Ji. 2010. "An efficient and effective duplication detection method in large database applications." Xiang, Yang, Samarati, Pierangela, Hu, Jiankun, Zhou, Wanlei and Sadeghi, Ahmad-Reza (ed.) NSS 2010: 4th International Conference on Network and System Security . Melbourne, Australia 01 - 03 Sep 2010 Los Alamitos, CA. United States. https://doi.org/10.1109/NSS.2010.78
A web-based interactive data visualization system for outlier subspace analysis
Liu, Dong, Gao, Qigang, Wang, Hai and Zhang, Ji. 2010. "A web-based interactive data visualization system for outlier subspace analysis." Debnath, Narayan (ed.) SEDE 2010: 19th International Conference on Software Engineering and Data Engineering. San Francisco, United States 16 - 18 Jun 2010 Cary, NC. United States.
Semi-bipartite graph visualization for gene ontology networks
Xu, Kai, Williams, Rohan, Hong, Seok-Hee, Liu, Qing and Zhang, Ji. 2010. "Semi-bipartite graph visualization for gene ontology networks." Eppstein, D. and Gansner, E. R. (ed.) GD 2009: 17th International Symposium on Graph Drawing. Chicago, United States 22 - 25 Sep 2009 Heidelberg, Germany. https://doi.org/10.1007/978-3-642-11805-0_24
FlowRecommender: a workflow recommendation technique for process provenance
Zhang, Ji, Liu, Qing and Xu, Kai. 2009. "FlowRecommender: a workflow recommendation technique for process provenance." Kennedy, Paul J., Ong, Kok-Leong and Christen, Peter (ed.) 8th Australasian Data Mining Conference (AusDM 2009): Data Mining and Analytics. Melbourne, Australia 01 - 04 Dec 2009 Melbourne, Australia.
Image mining: issues, frameworks and techniques
Zhang, Ji, Hsu, Wynne and Lee, Mong Li. 2001. "Image mining: issues, frameworks and techniques." Zaïane, Osmar R. and Simoff, Simeon J. (ed.) 2nd ACM SIGKDD International Workshop on Multimedia Data Mining (MDM/KDD'01). San Francisco, USA 26 Aug 2001 Canada.
HOS-Miner: a system for detecting outlying subspaces of high-dimensional data
Zhang, Ji, Lou, Meng, Ling, Tok Wang and Wang, Hai. 2004. "HOS-Miner: a system for detecting outlying subspaces of high-dimensional data." Nascimento, Mario A., Özsu, M. Tamer, Kossmann, Donald, Miller, Renee J., Blakeley, Jose A. and Schiefer, K. Bernhard (ed.) 30th International Conference on Very Large Data Bases (VLDB'04). Toronto, Canada 31 Aug - 03 Sep 2004 San Francisco, California, United States.
Detecting outlying subspaces for high-dimensional data: the new task, algorithms and performance
Zhang, Ji and Wang, Hai. 2006. "Detecting outlying subspaces for high-dimensional data: the new task, algorithms and performance." Knowledge and Information Systems. 10 (3), pp. 333-355.
Outlier detection for high-dimensional data streams
Zhang, Ji, Gao, Qigang and Wang, Hai. 2007. "Outlier detection for high-dimensional data streams." 5th Dalhousie Computer Science In-house Conference (DCSI'07). Halifax, Canada 05 Apr 2007 Halifax, Nova Scotia, Canada.
D-GridMST: clustering large distributed spatial databases
Zhang, Ji and Liu, Han. 2005. "D-GridMST: clustering large distributed spatial databases." Halgamuge, Saman K. and Wang, Lipo (ed.) Classification and clustering for knowledge discovery. Berlin, Germany. Springer. pp. 61-72
A novel dimensionality reduction technique based on independent component analysis for modeling microarray gene expression data
Liu, Han, Kustra, Rafal and Zhang, Ji. 2004. "A novel dimensionality reduction technique based on independent component analysis for modeling microarray gene expression data." Arabnia, Hamid R. (ed.) 2004 International Conference on Artificial Intelligence (ICAI'04). Las Vegas, United States 21 - 24 Jun 2004 Las Vegas, Nevada, USA.
A color indexing scheme using two-Level clustering processing for effective and efficient image retrieval
Zhang, Ji, Wang, Wei and Zhang, Sheng. 2005. "A color indexing scheme using two-Level clustering processing for effective and efficient image retrieval." Arabnia, Hamid R. and Scime, A. (ed.) 2005 International Conference on Data Mining (DMIN'05). Las Vegas, United States of America Jun 2005 Las Vegas, Nevada, USA.
Image mining: trends and developments
Hsu, Wynne, Lee, Mong Li and Zhang, Ji. 2002. "Image mining: trends and developments." Journal of Intelligent Information Systems. 19 (1), pp. 7-23. https://doi.org/10.1023/A:1015508302797
A framework for efficent association rule mining in XML data
Zhang, Ji, Liu, Han, Ling, Tok Wang, Bruckner, Robert and Tjoa, A. Min. 2006. "A framework for efficent association rule mining in XML data." Journal of Database Management. 17 (3), pp. 19-40.
Gene specific co-regulation discovery from gene microarray data
Zhang, Ji, Liu, Qing, Xu, Kai and de Souza, Paulo. 2008. "Gene specific co-regulation discovery from gene microarray data." Arthur, Jonathan and Ng, See-Kiong (ed.) 19th International Conference on Genome Informatics (GIW 2008). Gold Coast, Australia 01 - 03 Dec 2008
A review of ontology and web service composition
Zhang, Ji. 2008. A review of ontology and web service composition. Australia. CSIRO Publishing.
Bio-SENSE: semantic web services for bioinformatics provenance
Bouguettaya, Athman, Hepburn, Mark, Liu, Qing, Xu, Kai and Zhang, Ji. 2008. "Bio-SENSE: semantic web services for bioinformatics provenance." Bird, Trevor (ed.) 2008 CSIRO ICT Centre Conference. Sydney, Australia 20 - 21 Nov 2008 Sydney, Australia.
Towards outlier detection for high-dimensional data streams using projected outlier analysis strategy
Zhang, Ji. 2008. Towards outlier detection for high-dimensional data streams using projected outlier analysis strategy. PhD Thesis Doctor of Philosophy. Dalhousie University, Canada.
X-warehouse: building query pattern-driven data warehouse for XML data
Zhang, Ji, Wang, Wei, Liu, Han and Zhang, Sheng. 2005. "X-warehouse: building query pattern-driven data warehouse for XML data." Ellis, Allan and Hagino, Tatsuya (ed.) 14th International World Wide Web Conference (WWW'05). Chiba, Japan 10 - 14 May 2005 New York, NY, USA.
XAR-Miner: efficient association rules mining for XML data
Zhang, Sheng, Zhang, Ji, Liu, Han and Wang, Wei. 2005. "XAR-Miner: efficient association rules mining for XML data." Ellis, Allan and Hagino, Tatsuya (ed.) 14th International World Wide Web Conference (WWW'05). Chiba, Japan 10 - 14 May 2005 New York, NY, USA.
Detecting outlying subspaces for high-dimensional data: a heuristic search approach
Zhang, Ji. 2005. "Detecting outlying subspaces for high-dimensional data: a heuristic search approach." 2005 SIAM International Workshop on Feature Selection for Data Mining: Interfacing Machine Learning and Statistics. Newport Beach, United States of America 23 Apr 2005
Outlying subspace detection for high-dimensional data
Zhang, Ji, Gao, Qigang and Wang, Hai. 2009. "Outlying subspace detection for high-dimensional data." Rivero, Laura C., Doorn, Jorge Horacio and Ferraggine, Viviana E. (ed.) Encyclopedia of database technologies and applications, 2nd ed.. Hershey, PA, United States. IGI Global. pp. 1-6
Grid-ODF: detecting outliers effectively and efficiently in large multi-dimensional databases
Wang, Wei, Zhang, Ji and Wang, Hai. 2005. "Grid-ODF: detecting outliers effectively and efficiently in large multi-dimensional databases." Hao, Y., Liu, J., Wang, Y., Cheung, Y.-M., Yin, H., Jiao, L., Ma, J. and Jiao, Y.-C. (ed.) 2005 IEEE International Conference on Computational Intelligence and Security (CIS'05). Xi'an, China 15 - 19 Dec 2005 Heidelberg, Germany.
Bio-Sense: a system for supporting sharing and exploration in bioinformatics using semantic web services
Bouguettaya, Athman, Hepburn, Mark, Liu, Qing, Xu, Kai and Zhang, Ji. 2008. "Bio-Sense: a system for supporting sharing and exploration in bioinformatics using semantic web services." 4th IEEE International Conference on eScience (eScience'08). Indianapolis, United States 10 - 12 Dec 2009 New York, United States.
Discover gene specific local co-regulations using progressive genetic algorithm
Zhang, Ji, Gao, Qigang and Wang, Hai. 2006. "Discover gene specific local co-regulations using progressive genetic algorithm." 18th IEEE International Conference on Tools with Artificial Intelligence (ICTAI'06). Washington D.C., United States 13 - 15 Nov 2006 New York, United States.
A novel method for detecting outlying subspaces in high-dimensional databases using genetic algorithm
Zhang, Ji, Gao, Qigang and Wang, Hai. 2006. "A novel method for detecting outlying subspaces in high-dimensional databases using genetic algorithm." 6th IEEE International Conference on Data Mining (ICDM 2006). Hong Kong, China 18 - 20 Dec 2006 New York, United States.
Anomaly detection in high-dimensional network data streams: a case study
Zhang, Ji, Gao, Qigang and Wang, Hai. 2008. "Anomaly detection in high-dimensional network data streams: a case study." 2008 IEEE International Conference on Intelligence and Security Informatics (ISI '08). Taipei, Taiwan 17 - 20 Jun 2008 New York, United States.
SPOT: a system for detecting projected outliers from high-dimensional data streams
Zhang, Ji, Gao, Qigang and Wang, Hai. 2008. "SPOT: a system for detecting projected outliers from high-dimensional data streams." 24th IEEE International Conference on Data Engineering (ICDE 2008). Cancun, Mexico 07 - 12 Apr 2008 New York, United States. https://doi.org/10.1109/ICDE.2008.4497638
Clustering in dynamic spatial databases
Zhang, Ji, Hsu, Wynne and Lee, Mong Li. 2005. "Clustering in dynamic spatial databases." Journal of Intelligent Information Systems. 24 (1), pp. 5-27. https://doi.org/10.1007/s10844-005-0265-0