Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons

Article


Arun-Chinnappa, Kiruba S. and McCurdy, David W.. 2016. "Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons." Frontiers in Plant Science. 7, pp. 1-12. https://doi.org/10.3389/fpls.2016.00717
Article Title

Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons

ERA Journal ID200524
Article CategoryArticle
AuthorsArun-Chinnappa, Kiruba S. (Author) and McCurdy, David W. (Author)
Journal TitleFrontiers in Plant Science
Journal Citation7, pp. 1-12
Article Number717
Number of Pages12
Year2016
PublisherFrontiers Media SA
Place of PublicationSwitzerland
ISSN1664-462X
Digital Object Identifier (DOI)https://doi.org/10.3389/fpls.2016.00717
Web Address (URL)https://www.frontiersin.org/articles/10.3389/fpls.2016.00717/full
Abstract

Transfer cells (TCs) are anatomically-specialized cells formed at apoplasmic-symplasmic bottlenecks in nutrient transport pathways in plants. TCs form invaginated wall ingrowths which provide a scaffold to amplify plasma membrane surface area and thus increase the density of nutrient transporters required to achieve enhanced nutrient flow across these bottlenecks. Despite their importance to nutrient transport in plants, little is known of the transcriptional regulation of wall ingrowth formation. Here, we used RNA-Seq to identify transcription factors putatively involved in regulating epidermal TC development in cotyledons of Vicia faba. Comparing cotyledons cultured for 0, 3, 9, and 24 h to induce trans-differentiation of epidermal TCs identified 43 transcription factors that showed either epidermal-specific or epidermal–enhanced expression, and 10 that showed epidermal-specific down regulation. Members of the WRKY and ethylene-responsive families were prominent in the cohort of transcription factors showing epidermal-specific or epidermal–enhanced expression, consistent with the initiation of TC development often representing a response to stress. Members of the MYB family were also prominent in these categories, including orthologs of MYB genes involved in localized secondary wall deposition in Arabidopsis thaliana. Among the group of transcription factors showing down regulation were various homeobox genes and members of the MADs-box and zinc-finger families of poorly defined functions. Collectively, this study identified several transcription factors showing expression characteristics and orthologous functions that indicate likely participation in transcriptional regulation of epidermal TC development in V. faba cotyledons.

KeywordsVicia faba; transfer cells; wall ingrowth; trans-differentiation; transcription factors; RNA-Seq
ANZSRC Field of Research 2020310806. Plant physiology
Byline AffiliationsUniversity of Newcastle
Institution of OriginUniversity of Southern Queensland
Permalink -

https://research.usq.edu.au/item/q37v5/identification-of-candidate-transcriptional-regulators-of-epidermal-transfer-cell-development-in-vicia-faba-cotyledons

Download files

  • 1642
    total views
  • 97
    total downloads
  • 1
    views this month
  • 2
    downloads this month

Export as

Related outputs

Impacts and Management of Temperature and Water Stress in Crop Plants
Arun-Chinnappa, Kiruba Shankari, Ranawake, Lanka and Seneweera, Saman. 2017. "Impacts and Management of Temperature and Water Stress in Crop Plants." Minhas, Paramjit Singh, Rane, Jagadish and Pasala, Ratna Kumar (ed.) Abiotic Stress Management for Resilient Agriculture. Singapore. Springer. pp. 221-233
IMA Genome - F15: Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida
Duong, Tuan Anh, Aylward, Janneke, Ametrano, Claudio Gennaro, Poudel, Barsha, Santana, Quentin Carlo, Wilken, Pieter Markus, Martin, Anke, Arun‑Chinnappa, Kiruba Shankari, De Vos, Lieschen, DiStefano, Isabel, Grewe, Felix, Huhndorf, Sabine, Lumbsch, Helge Thorsten, Rakoma, Jostina Raesetsa, Poudel, Barsha, Steenkamp, Emma Theodora, Sun, Yukun, van der Nest, Magriet A., Wingfeld, Michael John, ..., Wingfeld, Brenda Diana. 2021. "IMA Genome - F15: Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida." IMA Fungus: the global mycological journal. 12 (1), pp. 1-17. https://doi.org/10.1186/s43008-021-00077-9
Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters
Jeffress, Sarah, Arun-Chinnappa, Kiruba, Stodart, Ben, Vaghefi, Niloofar, Tan, Yu Pei and Ash, Gavin. 2020. "Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters." PLoS One. 15 (5). https://doi.org/10.1371/journal.pone.0227396
Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects
Dehigaspitiya, Prabuddha, Milham, Paul, Ash, Gavin J., Arun-Chinnappa, Kiruba, Gamage, Dananjali, Martin, Anke, Nagasaka, Seiji and Seneweera, Saman. 2019. "Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects." Planta: an international journal of plant biology. 250, pp. 1033-1050. https://doi.org/10.1007/s00425-019-03223-1
Phloem parenchyma transfer cells in Arabidopsis – an experimental system to identify transcriptional regulators of wall ingrowth formation
Arun Chinnappa, Kiruba S., Nguyen, Thi Thu S., Hou, Jiexi, Wu, Yuzhou and McCurdy, David. 2013. "Phloem parenchyma transfer cells in Arabidopsis – an experimental system to identify transcriptional regulators of wall ingrowth formation." Frontiers in Plant Science. 4 (April), pp. 1-6. https://doi.org/10.3389/fpls.2013.00102
De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research
Arun-Chinnappa, Kiruba S. and McCurdy, David W.. 2015. "De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research." Frontiers in Plant Science. 6 (April), pp. 1-9. https://doi.org/10.3389/fpls.2015.00217