IMA Genome - F15: Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida
Article
Duong, Tuan Anh, Aylward, Janneke, Ametrano, Claudio Gennaro, Poudel, Barsha, Santana, Quentin Carlo, Wilken, Pieter Markus, Martin, Anke, Arun‑Chinnappa, Kiruba Shankari, De Vos, Lieschen, DiStefano, Isabel, Grewe, Felix, Huhndorf, Sabine, Lumbsch, Helge Thorsten, Rakoma, Jostina Raesetsa, Poudel, Barsha, Steenkamp, Emma Theodora, Sun, Yukun, van der Nest, Magriet A., Wingfeld, Michael John, ..., Wingfeld, Brenda Diana. 2021. "IMA Genome - F15: Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida." IMA Fungus: the global mycological journal. 12 (1), pp. 1-17. https://doi.org/10.1186/s43008-021-00077-9
| Article Title | IMA Genome - F15: Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida |
|---|---|
| ERA Journal ID | 123424 |
| Article Category | Article |
| Authors | Duong, Tuan Anh (Author), Aylward, Janneke (Author), Ametrano, Claudio Gennaro (Author), Poudel, Barsha (Author), Santana, Quentin Carlo (Author), Wilken, Pieter Markus (Author), Martin, Anke (Author), Arun‑Chinnappa, Kiruba Shankari (Author), De Vos, Lieschen (Author), DiStefano, Isabel (Author), Grewe, Felix (Author), Huhndorf, Sabine (Author), Lumbsch, Helge Thorsten (Author), Rakoma, Jostina Raesetsa (Author), Poudel, Barsha (Author), Steenkamp, Emma Theodora (Author), Sun, Yukun (Author), van der Nest, Magriet A. (Author), Wingfeld, Michael John (Author), Yilmaz, Neriman (Author) and Wingfeld, Brenda Diana (Author) |
| Journal Title | IMA Fungus: the global mycological journal |
| Journal Citation | 12 (1), pp. 1-17 |
| Article Number | 30 |
| Number of Pages | 17 |
| Year | 2021 |
| Publisher | Springer |
| Place of Publication | United Kingdom |
| ISSN | 2210-6340 |
| 2210-6359 | |
| Digital Object Identifier (DOI) | https://doi.org/10.1186/s43008-021-00077-9 |
| Web Address (URL) | https://imafungus.biomedcentral.com/articles/10.1186/s43008-021-00077-9 |
| Keywords | Genome; Fusarium pilosicola; Meredithiella fracta; Niebla homalea; Pyrenophora tere hybrid |
| ANZSRC Field of Research 2020 | 310705. Mycology |
| Byline Affiliations | University of Pretoria, South Africa |
| Grainger Bioinformatics Center, United States | |
| Centre for Crop Health | |
| Institution of Origin | University of Southern Queensland |
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McTaggart, Alistair R., Shivas, Roger G., van der Nest, Magriet A., Roux, Jolanda, Wingfield, Brenda D. and Wingfield, Michael J.. 2015. "Host jumps shaped the diversity of extant rust fungi (Pucciniales)." New Phytologist. 209 (3), pp. 1149-1158. https://doi.org/10.1111/nph.13686Fungal planet description sheets: 214-280
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Arun Chinnappa, Kiruba S., Nguyen, Thi Thu S., Hou, Jiexi, Wu, Yuzhou and McCurdy, David. 2013. "Phloem parenchyma transfer cells in Arabidopsis – an experimental system to identify transcriptional regulators of wall ingrowth formation." Frontiers in Plant Science. 4 (April), pp. 1-6. https://doi.org/10.3389/fpls.2013.00102De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research
Arun-Chinnappa, Kiruba S. and McCurdy, David W.. 2015. "De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research." Frontiers in Plant Science. 6 (April), pp. 1-9. https://doi.org/10.3389/fpls.2015.00217Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons
Arun-Chinnappa, Kiruba S. and McCurdy, David W.. 2016. "Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons." Frontiers in Plant Science. 7, pp. 1-12. https://doi.org/10.3389/fpls.2016.00717Excel table of genotyping data of the markers on the A and B genome chromosomes of eight hexaploid/tetraploid populations
Martin, Anke, Sutherland, Mark W. and Eberhard, Susette. Excel table of genotyping data of the markers on the A and B genome chromosomes of eight hexaploid/tetraploid populations. Toowoomba.Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources
Martin, A., Bovill, W. D., Percy, C. D., Herde, D., Fletcher, S., Kelly, A., Neate, S. M. and Sutherland, M. W.. 2015. "Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources." Theoretical and Applied Genetics: international journal of plant breeding research. 128 (3), pp. 377-385. https://doi.org/10.1007/s00122-014-2437-1Validation of a new spot form of net blotch differential set and evidence for hybridisation between the spot and net forms of net blotch in Australia
McLean, M. S., Martin, A., Gupta, S., Sutherland, M. W., Hollaway, G. J. and Platz, G. J.. 2014. "Validation of a new spot form of net blotch differential set and evidence for hybridisation between the spot and net forms of net blotch in Australia." Australasian Plant Pathology. 43 (3), pp. 223-233. https://doi.org/10.1007/s13313-014-0285-8Infection of wheat tissues by Fusarium pseudograminearum
Knight, N. L., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2009. "Infection of wheat tissues by Fusarium pseudograminearum." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.Crown rot of winter cereals: integrating molecular studies and germplasm improvement
Sutherland, Mark W., Bovill, W. D., Eberhard, F. S., Lehmensiek, A., Herde, D. and Simpfendorfer, S.. 2009. "Crown rot of winter cereals: integrating molecular studies and germplasm improvement." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.Use of SSR markers to determine the genetic purity of a popular Australian wheat variety and consequences for stripe rust reactions
Simpfendorfer, S., Martin, A. and Sutherland, M. W.. 2013. "Use of SSR markers to determine the genetic purity of a popular Australian wheat variety and consequences for stripe rust reactions." Seed Science and Technology. 41 (1), pp. 98-106. https://doi.org/10.15258/sst.2013.41.1.09QTLs for water absorption and flour yield identified in the doubled haploid wheat population Lang/QT8766
Fox, G. P., Martin, A., Kelly, A. M., Sutherland, M. W., Martin, D., Banks, P. M. and Sheppard, J.. 2013. "QTLs for water absorption and flour yield identified in the doubled haploid wheat population Lang/QT8766." Euphytica: international journal on plant breeding. 192 (3), pp. 453-462. https://doi.org/10.1007/s10681-013-0885-3Introgression of hexaploid sources of crown rot resistance into durum wheat
Martin, A., Simpfendorfer, S., Hare, R. A. and Sutherland, M. W.. 2013. "Introgression of hexaploid sources of crown rot resistance into durum wheat." Euphytica: international journal on plant breeding. 192 (3), pp. 463-470. https://doi.org/10.1007/s10681-013-0890-6Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification
Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W.. 2012. "Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification." Euphytica: international journal on plant breeding. 188 (3), pp. 325-332. https://doi.org/10.1007/s10681-012-0644-xAssessment of infection by Fusarium Pseudograminearum in wheat seedling tissues using quantitative PCR and a visual discoloration scale
Knight, Noel L., Sutherland, Mark W., Martin, Anke and Herde, Damian J.. 2012. "Assessment of infection by Fusarium Pseudograminearum in wheat seedling tissues using quantitative PCR and a visual discoloration scale." Plant Disease: an international journal of applied plant pathology. 96 (11), pp. 1661-1669. https://doi.org/10.1094/PDIS-12-11-1050-REQTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion
Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W.. 2012. "QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion." Euphytica: international journal on plant breeding. 185 (1), pp. 37-45. https://doi.org/10.1007/s10681-011-0608-6Quantitative PCR and histopathological investigations of cereal tissues during infection by the crown rot pathogen Fusarium pseudograminearum
Knight, N. L., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2011. "Quantitative PCR and histopathological investigations of cereal tissues during infection by the crown rot pathogen Fusarium pseudograminearum." Tran-Nguyen, Lucy (ed.) 4th Asian Conference on Plant Pathology and the 18th Biennial Australasian Plant Pathology Society Conference (ACPP/APPS 2011): New Frontiers in Plant Pathology for Asia and Oceania. Darwin, Australia 26 - 29 Apr 2011 Toowoomba, Australia.Retention of D genome chromosomes in pentaploid wheat crosses
Martin, A., Simpfendorfer, S., Hare, R. A., Eberhard, F. S. and Sutherland, M. W.. 2011. "Retention of D genome chromosomes in pentaploid wheat crosses." Heredity. 107 (4), pp. 315-319. https://doi.org/10.1038/hdy.2011.17Chromosomal loci associated with endosperm hardness in a malting barley cross
Walker, Cassandra K., Panozzo, J. F., Ford, R., Eckermann, P., Moody, D., Lehmensiek, A. and Appels, R.. 2011. "Chromosomal loci associated with endosperm hardness in a malting barley cross." Theoretical and Applied Genetics: international journal of plant breeding research. 122 (1), pp. 151-162. https://doi.org/10.1007/s00122-010-1431-5Markers for resistance to three foliar diseases in barley
Lehmensiek, A., Sutherland, M., Bovill, J. H., Platz, G. J., McNamara, R. B. and Mace, E.. 2010. "Markers for resistance to three foliar diseases in barley." Ceccarelli, Salvatore and Grando, Stefania (ed.) 10th International Barley Genetics Symposium (IBGS 2008). Alexandria, Egypt 05 - 10 Apr 2008The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley
Lehmensiek, Anke, Sutherland, Mark W. and McNamara, Raymond B.. 2008. "The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley." Theoretical and Applied Genetics: international journal of plant breeding research. 117 (5), pp. 721-728. https://doi.org/10.1007/s00122-008-0813-4Mapping of adult plant resistance to net form of net blotch in three Australian barley populations
Lehmensiek, A., Platz, G. J., Mace, E., Poulsen, D. and Sutherland, M. W.. 2007. "Mapping of adult plant resistance to net form of net blotch in three Australian barley populations." Australian Journal of Agricultural Research. 58 (12), pp. 1191-1197. https://doi.org/10.1071/AR07141Simple sequence repeat markers associated with three quantitative trait loci for black point resistance can be used to enrich selection populations in bread wheat
Christopher, M. J., Williamson, P. M., Michalowitz, M., Jennings, R., Lehmensiek, A., Sheppard, J. and Banks, P.. 2007. "Simple sequence repeat markers associated with three quantitative trait loci for black point resistance can be used to enrich selection populations in bread wheat." Australian Journal of Agricultural Research. 58 (9), pp. 867-873. https://doi.org/10.1071/AR05435Curation of wheat maps to improve map accuracy and QTL detection
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W. and Daggard, G. E.. 2005. "Curation of wheat maps to improve map accuracy and QTL detection." Australian Journal of Agricultural Research. 56 (12), pp. 1347-1354. https://doi.org/10.1071/AR05126QTLs for black-point resistance in wheat and the identification of potential markers for use in breeding programmes
Lehmensiek, A., Campbell, A. W., Williamson, P. M., Michalowitz, M., Sutherland, M. W. and Daggard, G. E.. 2004. "QTLs for black-point resistance in wheat and the identification of potential markers for use in breeding programmes." Plant Breeding. 123 (5), pp. 410-416. https://doi.org/10.1111/j.1439-0523.2004.01013.xResistance gene analogues of wheat: molecular genetic analysis of ESTs
McFadden, H. G., Lehmensiek, A. and Lagudah, E. S.. 2006. "Resistance gene analogues of wheat: molecular genetic analysis of ESTs." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (6), pp. 987-1002. https://doi.org/10.1007/s00122-006-0358-3Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome
Akbari, Mona, Wenzl, Peter, Caig, Vanessa, Carling, Jason, Xia, Ling, Yang, Shiying, Uszynski, Grzegorz, Mohler, Volker, Lehmensiek, Anke, Kuchel, Haydn, Hayden, Mathew J., Howes, Neil, Sharp, Peter, Vaughan, Peter, Rathmell, Bill, Huttner, Eric and Kilian, Andrzej. 2006. "Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (8), pp. 1409-1420. https://doi.org/10.1007/s00122-006-0365-4Flour yield QTLs in three Australian doubled haploid wheat populations
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Collard, B. C. Y., Grams, R. A., Bovill, W. D., Percy, C. D., Jolley, R., Lehmensiek, A., Wildermuth, G. B. and Sutherland, M. W.. 2005. "Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population." Plant Breeding. 124 (6), pp. 532-537. https://doi.org/10.1111/j.1439-0523.2005.01163.xMolecular characterization of a Triticum timopheevii introgression in a Wentworth/Lang population
Lehmensiek, A., Bovill, W. D., Banks, P. M. and Sutherland, M. W.. 2008. "Molecular characterization of a Triticum timopheevii introgression in a Wentworth/Lang population." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Infection of wheat tissues by fusarium pseudograminearum
Knight, N. L., Percy, C., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2008. "Infection of wheat tissues by fusarium pseudograminearum." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Validation of black point QTL in wheat
Tah, P. R., Lehmensiek, A., Williamson, P. M., Michalowitz, M., Done, A. and Daggard, G. E.. 2008. "Validation of black point QTL in wheat." Appels, Rudi, Eastwood, Russell, Lagudah, Peter, Mackay, Michael, McIntyre, Lynne and Sharp, Peter J. (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Identification of genetic regions associated with black point in barley
Tah, Priya R., Lehmensiek, A., Fox, Glen P., Mace, Emma, Sulman, Maria, Bloustein, Gary and Daggard, Grant E.. 2010. "Identification of genetic regions associated with black point in barley." Field Crops Research. 115 (1), pp. 61-66. https://doi.org/10.1016/j.fcr.2009.10.003Molecular mapping of adult plant stripe rust resistance in wheat and identification of pyramided QTL genotypes
Bariana, H. S., Bansal, U. K., Schmidt, A., Lehmensiek, A., Kaur, J., Miah, H., Howes, N. and McIntyre, C. L.. 2010. "Molecular mapping of adult plant stripe rust resistance in wheat and identification of pyramided QTL genotypes." Euphytica: international journal on plant breeding. 176 (2), pp. 251-260. https://doi.org/10.1007/s10681-010-0240-xMapping spot blotch resistance genes in four barley populations
Bovill, Jessica, Lehmensiek, Anke, Sutherland, Mark W., Platz, Greg. J., Usher, Terry, Franckowiak, Jerome and Mace, Emma. 2010. "Mapping spot blotch resistance genes in four barley populations." Molecular Breeding: new strategies in plant improvement. 26 (4), pp. 653-666. https://doi.org/10.1007/s11032-010-9401-9Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH
Eberhard, Friederike S., Zhang, Peng, Lehmensiek, Anke, Hare, Ray A., Simpfendorfer, Steven and Sutherland, Mark W.. 2010. "Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH." Crop and Pasture Science. 61 (8), pp. 619-624. https://doi.org/10.1071/CP10131An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley
Knight, N. L., Platz, G. J., Lehmensiek, A. and Sutherland, M. W.. 2010. "An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley." Australasian Plant Pathology. 39 (3), pp. 207-216. https://doi.org/10.1071/AP09082Genomic regions associated with common root rot resistance in the barley variety Delta
Lehmensiek, A., Bovill, J., Sutherland, M. W. and McNamara, R. B.. 2010. "Genomic regions associated with common root rot resistance in the barley variety Delta." Australasian Plant Pathology. 39 (3), pp. 241-246. https://doi.org/10.1071/AP09089Population structure of South African and Australian Pyrenophora teres isolates
Lehmensiek, A., Bester-van der Merwe, A. E., Sutherland, M. W., Platz, G., Kriel, W. M., Potgieter, G. F. and Prins, R.. 2010. "Population structure of South African and Australian Pyrenophora teres isolates." Plant Pathology. 59 (3), pp. 504-515. https://doi.org/10.1111/j.1365-3059.2009.02231.xGenetic mapping in the Triticeae
Lehmensiek, Anke, Bovill, William, Wenzl, Peter, Langridge, Peter and Appels, Rudi. 2009. "Genetic mapping in the Triticeae." Feuillet, Catherine and Muehlbauer, Gary (ed.) Genetics and genomics of the Triticeae. New York, NY. United States. Springer. pp. 201-235QTL mapping of stripe, leaf and stem rust resistance genes in a Kariega x Avocet S doubled haploid wheat population
Prins, R., Pretorius, Z. A., Bender, C. M. and Lehmensiek, A.. 2011. "QTL mapping of stripe, leaf and stem rust resistance genes in a Kariega x Avocet S doubled haploid wheat population." Molecular Breeding: new strategies in plant improvement. 27 (2), pp. 259-270. https://doi.org/10.1007/s11032-010-9428-yBipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley
Sutherland, M. W., Lehmensiek, A., Leist, C., Platz, G. and Usher, T. R.. 2009. "Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Indooroopilly, Australia.Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH
Eberhard, F. S., Zhang, P., Lehmensiek, A., Sutherland, M. W., Hare, R. and Simpfendorfer, S.. 2008. "Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH." Appels, Rudi, Eastwood, Russell, Lagudah, Evans, Mackay, Michael, McIntyre, Lynne, Sharp, Peter and Langridge, Peter (ed.) 11th International Wheat Genetics Sympoium (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats
Sutherland, Mark, Bovill, W. D., Horne, M., Lehmensiek, A., Eberhard, F., Percy, C., Wildermuth, G. B., Simpfendorfer, S. and Hare, R.. 2008. "The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats." 10th International Fusarium and Fusarium Genomics Workshop 2008. Sardinia, Italy 30 Aug - 02 Sep 2008 Sardinia,Italy.Mapping markers for priority traits in the northern grains region of Australia
Mace, E., Sutherland, Mark, Lehmensiek, Anke, Bovill, Bill, Bovill, Jessica, Collard, Bert, Daggard, Grant and Christopher, M. J.. 2006. "Mapping markers for priority traits in the northern grains region of Australia." ITMI Workshop and ACPFG Genomics Symposium (2006). Victor Harbour, Australia 27 - 31 Aug 2006Strategies for fine mapping QTLs for crown rot resistance in wheats
Bovill, W. D., Collard, B. C. Y., Lehmensiek, Anke, Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Strategies for fine mapping QTLs for crown rot resistance in wheats." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong.Molecular mapping of durable rust resistance in wheat and its implication in breeding
Bariana, H. S., Miah, H., Brown, G. N., Willey, N. and Lehmensiek, A.. 2007. "Molecular mapping of durable rust resistance in wheat and its implication in breeding." 7th International Wheat Conference (IWC 2005). Argentina 27 Nov - 02 Dec 2005 https://doi.org/10.1007/1-4020-5497-1_88Genetic mapping of gray leaf spot (GLS) resistance genes in maize
Lehmensiek, A., Esterhuizen, A. M., Van Staden, D., Nelson, S. W. and Retief, A. E.. 2001. "Genetic mapping of gray leaf spot (GLS) resistance genes in maize ." Theoretical and Applied Genetics: international journal of plant breeding research. 103 (5), pp. 797-803. https://doi.org/10.1007/s001220100599This item comprises data from the following sources: Scopus