Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters

Article


Jeffress, Sarah, Arun-Chinnappa, Kiruba, Stodart, Ben, Vaghefi, Niloofar, Tan, Yu Pei and Ash, Gavin. 2020. "Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters." PLoS One. 15 (5). https://doi.org/10.1371/journal.pone.0227396
Article Title

Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters

ERA Journal ID39745
Article CategoryArticle
AuthorsJeffress, Sarah (Author), Arun-Chinnappa, Kiruba (Author), Stodart, Ben (Author), Vaghefi, Niloofar (Author), Tan, Yu Pei (Author) and Ash, Gavin (Author)
Journal TitlePLoS One
Journal Citation15 (5)
Article Numbere0227396
Number of Pages33
Year29 May 2020
PublisherPublic Library of Science (PLoS)
Place of PublicationUnited States
ISSN1932-6203
Digital Object Identifier (DOI)https://doi.org/10.1371/journal.pone.0227396
Web Address (URL)https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0227396
Abstract

Elsinoe¨ fawcettii, a necrotrophic fungal pathogen, causes citrus scab on numerous citrus varieties around the world. Known pathotypes of E. fawcettii are based on host range; additionally, cryptic pathotypes have been reported and more novel pathotypes are thought to exist. E. fawcettii produces elsinochrome, a non-host selective toxin which contributes to virulence. However, the mechanisms involved in potential pathogen-host interactions occurring prior to the production of elsinochrome are unknown, yet the host-specificity observed among pathotypes suggests a reliance upon such mechanisms. In this study we have generated a whole genome sequencing project for E. fawcettii, producing an annotated draft assembly 26.01 Mb in size, with 10,080 predicted gene models and low (0.37%) coverage of transposable elements. A small proportion of the assembly showed evidence of AT-rich regions, potentially indicating genomic regions with increased plasticity. Using a variety of computational tools, we mined the E. fawcettii genome for potential virulence genes as candidates for future investigation. A total of 1,280 secreted proteins and 276 candidate effectors were predicted and compared to those of other necrotrophic (Botrytis cinerea, Parastagonospora nodorum, Pyrenophora tritici-repentis, Sclerotinia sclerotiorum and Zymoseptoria tritici), hemibiotrophic (Leptosphaeria maculans, Magnaporthe oryzae, Rhynchosporium commune and Verticillium dahliae) and biotrophic (Ustilago maydis) plant pathogens. Genomic and proteomic features of known fungal effectors were analysed and used to guide the prioritisation of 120 candidate effectors of E. fawcettii. Additionally, 378 carbohydrate-active enzymes were predicted and analysed for likely secretion and sequence similarity with known virulence genes. Furthermore, secondary metabolite prediction indicated nine additional genes potentially involved in the elsinochrome biosynthesis gene cluster than previously described.

KeywordsLeptosphaeria-maculans genome; phytotoxic nep1-like proteins; induced point mutation; scab diseases; elsinochrome phytotoxin; molecular analysis; avirulence gene; pathological characterization; simmondsia-chinensis; functional-analysis
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020310509. Genomics
310805. Plant pathology
Byline AffiliationsCentre for Crop Health
Charles Sturt University
Department of Agriculture and Fisheries, Queensland
Institution of OriginUniversity of Southern Queensland
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Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales
Kiss, Levente, Vaghefi, Niloofar, Bransgrove, Kaylene, Dearnaley, John D. W., Takamatsu, Susumu, Tan, Yu Pei, Marston, Craig, Liu, Shu-Yan, Jin, Dan-Ni, Adorada, Dante L., Bailey, Jordan, Cabrera de Alvarez, Maria Graciela, Daly, Andrew, Dirchwolf, Pamela Maia, Jones, Lynne, Nguyen, Thuan Dat, Edwards, Jacqueline, Ho, Wellcome, Kelly, Lisa, ..., Braun, Uwe. 2020. "Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales." Frontiers in Microbiology. 11, pp. 1-31. https://doi.org/10.3389/fmicb.2020.01571
Genome mining and comparative genomics of Elsinoe species, causing scab diseases on citrus and jojoba in Australia, for the prediction of virulence genes
Jeffress, Sarah. 2021. Genome mining and comparative genomics of Elsinoe species, causing scab diseases on citrus and jojoba in Australia, for the prediction of virulence genes. PhD Thesis Doctor of Philosophy. University of Southern Queensland. https://doi.org/10.26192/q7161
Investigation of slow release of urea from biodegradable single- and double-layered hollow nanofibre yarns
Javazmi, Leila, Low, Tobias, Ash, Gavin and Young, Anthony. 2020. "Investigation of slow release of urea from biodegradable single- and double-layered hollow nanofibre yarns." Scientific Reports. 10 (1). https://doi.org/10.1038/s41598-020-76395-6
Integration of entomopathogenic fungi into IPM programs: studies involving weevils (Coleoptera: Curculionoidea) affecting horticultural crops
Khun, Kim Khuy, Wilson, Bree A. L, Stevens, Mark M., Huwer, Ruth K. and Ash, Gavin J.. 2020. "Integration of entomopathogenic fungi into IPM programs: studies involving weevils (Coleoptera: Curculionoidea) affecting horticultural crops." Insects. 11 (10). https://doi.org/10.3390/insects11100659
Effect of various urea concentrations on nitrogen slow release from PLLA nanofiber mat
Javazmi, Leila, Low, Tobias, Young, Anthony and Ash, Gavin. 2020. "Effect of various urea concentrations on nitrogen slow release from PLLA nanofiber mat." 8th International Conference on Nanoscience and Nanotechnology (ICONN 2020). Brisbane, Australia 09 - 13 Feb 2020 Brisbane, Australia.
Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean
Vaghefi, Niloofar, Adorada, Dante, Adorada, Encarnacion, Kelly, Lisa, Young, Anthony and Sparks, Adam. 2019. "Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean." 2019 Australian Summer Grains Conference: Enduring Farm Profitability (ASCG 2019). Gold Coast, Australia 08 - 10 Jul 2019
What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?
Vaghefi, N., Adorada, D., Adorada, E., Kelly, L., Young, A. and Sparks, A.. 2019. "What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?" 22nd Biennial Australasian Plant Pathology Society Conference (APPS 2019): Strong Foundations, Future Innovations. Melbourne, Australia 25 - 28 Nov 2019
Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum
Purushotham, Neeraj, Jones, Ashley, Poudel, Barsha, Nasim, Jamila, Adorada, Dante, Sparks, Adam, Schwessinger, Benjamin and Vaghefi, Niloofar. 2020. "Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum." Molecular Plant-Microbe Interactions. 33 (5), pp. 724-726. https://doi.org/10.1094/MPMI-12-19-0356-A
Compatibility of Metarhizium anisopliae and Beauveria bassiana with insecticides and fungicides used in macadamia production in Australia
Khun, Kim Khuy, Ash, Gavin J., Stevens, Mark M., Huwer, Ruth K. and Wilson, Bree A.L.. 2021. "Compatibility of Metarhizium anisopliae and Beauveria bassiana with insecticides and fungicides used in macadamia production in Australia." Pest Management Science. 77 (2), pp. 709-718. https://doi.org/10.1002/ps.6065
Response of the macadamia seed weevil Kuschelorhynchus macadamiae (Coleoptera: Curculionidae) to Metarhizium anisopliae and Beauveria bassianain laboratory bioassays
Khun, Kim Khuy, Ash, Gavin J., Stevens, Mark M., Huwer, Ruth K. and Wilson, Bree A.L.. 2020. "Response of the macadamia seed weevil Kuschelorhynchus macadamiae (Coleoptera: Curculionidae) to Metarhizium anisopliae and Beauveria bassianain laboratory bioassays." Journal of Invertebrate Pathology. 174, pp. 1-7. https://doi.org/10.1016/j.jip.2020.107437
Fungal Planet description sheets: 1042-1111
Crous, P. W., Wingfield, M. J., Chooi, Y.-H., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano-Lira, J. F., Valenzuela-Lopez, N., Hubka, V., Shivas, R. G., Stchigel, A. M., Holdom, D. G., Jurjevic, Z., Kachalkin, A. V., Lebel, T., Lock, C., Martin, M. P., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1042-1111." Persoonia. 44, pp. 301-459. https://doi.org/10.3767/persoonia.2020.44.11
A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)
Kusch, Stefan, Nemeth, Mark Z., Vaghefi, Niloofar, Ibrahim, Heba M.M., Panstruga, Ralph and Kiss, Levente. 2020. "A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)." Molecular Plant-Microbe Interactions. 33 (6), pp. 782-786. https://doi.org/10.1094/MPMI-02-20-0029-A
Re-visiting management options for charcoal rot in sorghum (updated)
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2019. "Re-visiting management options for charcoal rot in sorghum (updated)." GRDC Communities.
Phomopsis husk rot of macadamia in Australia and South Africa caused by novel Diaporthe species
Wrona, Christopher J., Mohankumar, Vheena, Schoeman, Maritha H., Tan, Yu P., Shivas, Roger G.S., Jeff-Ego, Olumide S. and Akinsanmi, Olufemi A.. 2020. "Phomopsis husk rot of macadamia in Australia and South Africa caused by novel Diaporthe species." Plant Pathology. 69 (5), pp. 911-921. https://doi.org/10.1111/ppa.13170
Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia
Vaghefi, Niloofar, Thompson, Susan M., Kimber, Rohan B.E., Thomas, Geoff J., Kant, Pragya, Barbetti, Martin J. and van Leur, Joop A.G.. 2020. "Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia." Mycological Progress: international journal of fungal sciences. 19, pp. 381-396. https://doi.org/10.1007/s11557-020-01566-8
Occurrence and diversity of entomopathogenic fungi (Beauveria spp. and Metarhizium spp.) in Australian vineyard soils
Korosi, Gyongyver A., Wilson, Bree A. L., Powell, Kevin S., Ash, Gavin J., Reineke, Annette and Savocchia, Sandra. 2019. "Occurrence and diversity of entomopathogenic fungi (Beauveria spp. and Metarhizium spp.) in Australian vineyard soils." Journal of Invertebrate Pathology. 164, pp. 69-77. https://doi.org/10.1016/j.jip.2019.05.002
Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects
Dehigaspitiya, Prabuddha, Milham, Paul, Ash, Gavin J., Arun-Chinnappa, Kiruba, Gamage, Dananjali, Martin, Anke, Nagasaka, Seiji and Seneweera, Saman. 2019. "Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects." Planta: an international journal of plant biology. 250, pp. 1033-1050. https://doi.org/10.1007/s00425-019-03223-1
Fungal planet description sheets: 951–1041
Crous, P. W., Wingfield, M. J., Lombard, L., Roets, F., Swart, W. J., Alvarado, P., Carnegie, A. J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A. V., Baseia, I. G., Bellanger, J. -M., Bessette, A. E., Bessette, A. R., De la Pena-Lastra, S., Garcia, D., Gene, J., Pham, T. H. G., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 951–1041." Persoonia. 43, pp. 223-425. https://doi.org/10.3767/persoonia.2019.43.06
Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers
Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, Anke. 2019. "Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers." Plant Pathology. 68 (7), pp. 1331-1336. https://doi.org/10.1111/ppa.13035
Genera of phytopathogenic fungi: GOPHY 3
Marin-Felix, Y., Hernandez-Restrepo, M., Iturrieta-Gonzalez, I., Garcia, D., Gene, J., Groenewald, J. Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R. K., Taylor, P. W. J., Ambers, C., Bonthond, G., Edwards, J., Krueger-Hadfield, S. A., Luangsa-ard, J. J., Morton, L., Moslemi, A., Sandoval-Denis, M., ..., Crous, P. W.. 2019. "Genera of phytopathogenic fungi: GOPHY 3." Studies in Mycology. 94, pp. 1-124. https://doi.org/10.1016/j.simyco.2019.05.001
Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin
Knight, Noel L., Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Secor, Gary A., Rivera, Viviana V., Hanson, Linda E., Nelson, Scot C. and Pethybridge, Sarah J.. 2019. "Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin." Phytopathology: International Journal of the American Phytopathological Society. 109 (7), pp. 1280-1292. https://doi.org/10.1094/PHYTO-07-18-0264-R
Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited
Tan, Yu Pei, Shivas, Roger G., Marney, Thomas S., Edwards, Jacqueline, Dearnaley, John, Jami, Fahimeh and Burgess, Treena I.. 2019. "Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited." Australasian Plant Pathology. 48 (1), pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7
Chronic effects and horizontal transmission of Metarhizium anisopliae strain QS155 infection in the sweet potato weevil, Cylas formicarius (Coleoptera: Brentidae)
Dotaona, Ronnie, Wilson, Bree A. L., Stevens, Mark M., Holloway, Joanne and Ash, Gavin J.. 2017. "Chronic effects and horizontal transmission of Metarhizium anisopliae strain QS155 infection in the sweet potato weevil, Cylas formicarius (Coleoptera: Brentidae)." Biological Control. 114, pp. 24-29. https://doi.org/10.1016/j.biocontrol.2017.07.008
Biodiscovery and the Queensland Plant Pathology Herbarium
Shivas, Roger G., Beasley, Dean R., Bransgrove, Kaylene, Tan, Yu Pei and Bulow, Geoff. 2019. "Biodiscovery and the Queensland Plant Pathology Herbarium." Microbiology Australia. 40 (3), pp. 134-137. https://doi.org/10.1071/MA19036
Encapsulation of flutriafol fungicide into electrospun biodegredable poly (L-lactide) nanofibers
Javazmi, Leila, Low, Tobias, Ash, Gavin and Young, Anthony. 2018. "Encapsulation of flutriafol fungicide into electrospun biodegredable poly (L-lactide) nanofibers." 2018 Applied Nanotechnology and Nanoscience International Conference (ANNIC 2018). Berlin, Germany 22 - 24 Oct 2018
Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia
Thompson, S. M., Tan, Y. P., Neate, S. M., Grams, R. M., Shivas, R. G., Lindbeck, K. and Aitken, E. A. B.. 2018. "Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia." European Journal of Plant Pathology. 152 (3), pp. 823-831. https://doi.org/10.1007/s10658-018-1515-7
Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris
Vaghefi, Niloofar, Silva, Alex, Koenick, Lori B. and Pethybridge, Sarah J.. 2019. "Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris." Molecular Plant-Microbe Interactions. 32 (7), pp. 787-789. https://doi.org/10.1094/MPMI-12-18-0334-A
Re-evaluation of Mycoleptodiscus species and morphologically similar fungi
Hernandez-Restrepo, M., Bezerra, J. D. P., Tan, Y. P., Wiederhold, N., Crous, P. W., Guarro, J. and Gené, J.. 2019. "Re-evaluation of Mycoleptodiscus species and morphologically similar fungi." Persoonia. 42, pp. 205-227. https://doi.org/10.3767/persoonia.2019.42.08
An international perspective on genetic structure and gene flow in Cercospora beticola populations
Knight, N. L., Vaghefi, N., Kikkert, J., Bolton, M. D., Secor, G. A., Hanson, L., Nelson, S. C. and Pethybridge, S. J.. 2018. "An international perspective on genetic structure and gene flow in Cercospora beticola populations." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States. American Phytopathological Society.
Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA
Koenick, L., Knight, N. L., Vaghefi, N., du Toit, L. and Pethybridge, S. J.. 2018. "Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States.
A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys
Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium: Paddock to Plates. Adelaide, Australia 04 - 08 Sep 2018 Australia.
Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Development of microsatellite markers for quantifying genetic diversity of Pleospora betae
Koenick, Lori, Vaghefi, Niloofar, Knight, Noel L., du Toit, Lindsey and Pethybridge, Sarah J.. 2017. "Development of microsatellite markers for quantifying genetic diversity of Pleospora betae." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present
Dotaona, Ronnie, Wilson, Bree A. L., Ash, Gavin J., Holloway, Joanne and Stevens, Mark M.. 2017. "Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present." Journal of Invertebrate Pathology. 148, pp. 67-72. https://doi.org/10.1016/j.jip.2017.05.010
Ray blight of pyrethrum in Australia: a review of the current status and future opportunities
Bhuiyan, M. A. H. B., Vaghefi, N. and Taylor, P. W. J.. 2019. "Ray blight of pyrethrum in Australia: a review of the current status and future opportunities." Plant Pathology. 68 (4), pp. 620-627. https://doi.org/10.1111/ppa.13000
Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2018. "Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields." Plant Disease: an international journal of applied plant pathology. 102 (11), pp. 2074-2082. https://doi.org/10.1094/PDIS-01-18-0175-RE
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata
Wingfield, Brenda D., Bills, Gerald F., Dong, Yang, Huang, Wenli, Nel, Wilma J., Swalarsk-Parry, Benedicta S., Vaghefi, Niloofar, Wilken, Markus P., An, Zhiqiang, de Beer, Z. Wilhelm, De Vos, Lieschen, Chen, Li, Duong, Tuan A., Gao, Yun, Hammerbacher, Almuth, Kikkert, Julie R., Li, Yan, Li, Huiying, Li, Kuan, ..., Zhang, Xiaoling. 2018. "Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata." IMA Fungus: the global mycological journal. 9 (1), pp. 199-223. https://doi.org/10.5598/imafungus.2018.09.01.13
Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]
Adorada, Dante, Kelly, Lisa, Vaghefi, Niloofar and Sparks, Adam H,. 2018. "Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]." GRDC Field Crop Diseases Community of Practice. 1 October 2018, pp. 1-8.
Current status of the Botryosphaeriaceae in Australia
Burgess, Treena I., Tan, Yu Pei, Garnas, Jeff, Edwards, Jacqueline, Scarlett, Kelly A., Shuttleworth, Lucas A., Daniel, Rosalie, Dann, Elizabeth K., Parkinson, Louisamarie E., Dinh, Quang, Shivas, Roger G. and Jami, Fahimeh. 2019. "Current status of the Botryosphaeriaceae in Australia." Australasian Plant Pathology. 48 (1), pp. 35-44. https://doi.org/10.1007/s13313-018-0577-5
Multi-locus phylogeny and taxonomy of Exserohilum
Hernandez-Restrepo, M., Madrid, H., Tan, Y. P., da Cunha, K. C., Gené, J., Guarro, J. and Crous, P. W.. 2018. "Multi-locus phylogeny and taxonomy of Exserohilum." Persoonia. 41, pp. 71-108. https://doi.org/10.3767/persoonia.2018.41.05
Fungal planet description sheets: 716-784
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Gene, J., Guarro, J., Baseia, I. G., Garcia, D., Gusmao, L. F. P., Souza-Motta, C. M., Thangavel, R., Adamcik, S., Barili, A., Barnes, C. W., Bezerra, J. D. P., Bordallo, J. J., Cano-Lira, J. F., de Oliveira, R. J. V., Ercole, E., ..., Groenewald, J. Z.. 2018. "Fungal planet description sheets: 716-784." Persoonia. 40, pp. 240-393. https://doi.org/10.3767/persoonia.2018.40.10
Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia
Kiss, Levente, Kovacs, Gabor M., Boka, Karoly, Bohar, Gyula, Boharne, Krisztina Varga, Nemeth, Mark Z., Takamatsu, Susumu, Shin, Hyeon-Dong, Hayova, Vera, Nischwitz, Claudia, Seier, Marion K., Evans, Harry C., Cannon, Paul F., Ash, Gavin James, Shivas, Roger G. and Muller-Scharer, Heinz. 2018. "Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia." Scientific Reports. 8, pp. 1-14. https://doi.org/10.1038/s41598-018-29102-5
First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA
Hay, F., Vaghefi, N., Strickland, D., Hadad, R. and Pethybridge, S.. 2018. "First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA." New Disease Reports. 38 (1), pp. 1-1. https://doi.org/10.5197/j.2044-0588.2018.038.001
First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia
Thompson, S. M., Grams, R. A., Neate, S. M., Shivas, R.G., Ryley, M. J, Tan, Y. P., Aitken, E. A. B., Wright, G. C and O’Connor, D. J.. 2018. "First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia." Plant Disease: an international journal of applied plant pathology. 102 (7), p. 1459. https://doi.org/10.1094/PDIS-12-17-1930-PDN
Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium
Tan, Yu Pei, Crous, Pedro W. and Shivas, Roger G.. 2018. "Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium." MycoKeys. 35, pp. 1-25. https://doi.org/10.3897/mycokeys.35.25665
Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2018. "Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]." eXtension AUS Field Crop Diseases. 19 March 2018, pp. 1-8.
Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris
Vaghefi, Niloofar, Kikkert, Julie R., Hay, Frank S., Carver, Gavriela D., Koenick, Lori B., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2018. "Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris." Fungal Biology. 122 (4), pp. 264-282. https://doi.org/10.1016/j.funbio.2018.01.008
First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note
Hay, F. S., Vaghefi, N., Ivy, A. and Pethybridge, S. J.. 2017. "First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note." Plant Disease: an international journal of applied plant pathology. 101 (1), pp. 248-248. https://doi.org/10.1094/PDIS-05-16-0656-PDN
First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York
Hay, F. S., Maloney, E., Vaghefi, N., Shivas, R. G and Pethybridge, S. J. 2017. "First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York." Plant Disease: an international journal of applied plant pathology. 101 (11), pp. 1953-1953. https://doi.org/10.1094/PDIS-05-17-0648-PDN
Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia
Giblin, F. R., Tan, Y. P., Mitchell, R., Coates, L. M., Irwin, J. A. G. and Shivas, R.G.. 2018. "Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia." Australasian Plant Pathology. 47 (3), pp. 269-276. https://doi.org/10.1007/s13313-018-0553-0
Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015
Pethybridge, S. J., Vaghefi, N. and Kikkert, J.. 2016. "Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015." Plant Disease Management Reports. 3 (Report No. 10), pp. 1-1.
Genera of phytopathogenic fungi: GOPHY 1
Marin-Felix, Y., Groenewald, J. Z., Cai, L., Chen, Q., Marincowitz, S., Barnes, I., Bensch, K., Braun, U., Camporesi, E., Damm, U., de Beer, Z. W., Dissanayake, A., Edwards, J., Giraldo, A., Hernandez-Restrepo, M., Hyde, K. D., Jayawardena, R. S., Lombard, L., Luangsa-ard, J., ..., Crous, P. W.. 2017. "Genera of phytopathogenic fungi: GOPHY 1." Studies in Mycology. 86 (86), pp. 99-216. https://doi.org/10.1016/j.simyco.2017.04.002
Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York." Horttechnology. 27 (4), pp. 530-538.
Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata
Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., ..., Wingfield, Michael J.. 2015. "Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata." IMA Fungus: the global mycological journal. 6 (1), pp. 233-248. https://doi.org/10.5598/imafungus.2015.06.01.15
Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields
Vaghefi, Niloofar, Hay, Frank S., Ades, Peter K., Pethybridge, Sarah Jane, Ford, Rebecca and Taylor, Paul W. J.. 2015. "Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields." Phytopathology: International Journal of the American Phytopathological Society. 105 (3), pp. 358-369. https://doi.org/10.1094/PHYTO-08-14-0212-R
Curvularia tsudae comb. nov. et nom. nov., formerly Pseudocochliobolus australiensis, and a revised synonymy for Curvularia australiensis
Deng, Hui, Tan, Yu Pei, Shivas, Roger G. and Niu, Yong Chun. 2015. "Curvularia tsudae comb. nov. et nom. nov., formerly Pseudocochliobolus australiensis, and a revised synonymy for Curvularia australiensis." Mycoscience. 56 (1), pp. 24-28. https://doi.org/10.1016/j.myc.2014.02.002
Johnalcornia gen. et. comb. nov., and nine new combinations in Curvularia based on molecular phylogenetic analysis
Tan, Yu Pei, Madrid, Hugo, Crous, Pedro W. and Shivas, Roger G.. 2014. "Johnalcornia gen. et. comb. nov., and nine new combinations in Curvularia based on molecular phylogenetic analysis." Australasian Plant Pathology. 43 (6), pp. 589-603. https://doi.org/10.1007/s13313-014-0315-6
Characterization of aggregates produced by the potential mycoherbistat Plectosporium alismatisin submerged culture: germination, UV-radiation tolerance and infectivity
Cliquet, Sophie, Despreaux, Julien, Zeeshan, Kashif, de la Broise, Denis and Ash, Gavin. 2011. "Characterization of aggregates produced by the potential mycoherbistat Plectosporium alismatisin submerged culture: germination, UV-radiation tolerance and infectivity." Biocontrol Science and Technology. 21 (10), pp. 1243-1256. https://doi.org/10.1080/09583157.2011.604124
Survey of Botryosphaeriaceae associated with grapevine decline in the Hunter Valley and Mudgee grape growing regions of New South Wales
Qiu, Y., Steel, C. C., Ash, G. J. and Savocchia, S.. 2011. "Survey of Botryosphaeriaceae associated with grapevine decline in the Hunter Valley and Mudgee grape growing regions of New South Wales." Australasian Plant Pathology. 40 (1), pp. 1-11. https://doi.org/10.1007/s13313-010-0007-9
The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers
Yang, Shi Ying, Saxena, Rachit K., Kulwal, Pawan L., Ash, Gavin J., Dubey, Anuja, Harper, John D. I., Upadhyaya, Hari D., Gothalwal, Ragini, Kilian, Andrzej and Varshney, Rajeev K.. 2011. "The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers." Journal of Genetics. 90 (1), pp. 103-109. https://doi.org/10.1007/s12041-011-0050-5
Association of Botryosphaeriaceae grapevine trunk disease fungi with the reproductive structures of Vitis vinifera
Wunderlich, N., Ash, G. J., Steel, C. C., Raman, H. and Savocchia, S.. 2011. "Association of Botryosphaeriaceae grapevine trunk disease fungi with the reproductive structures of Vitis vinifera." Vitis: journal of grapevine research. 50 (2), pp. 89-96.
Refining the biological factors affecting virulence of Botryosphaeriaceae on grapevines
Wunderlich, N., Ash, G. J., Steel, C. C., Raman, H., Cowling, A. and Savocchia, S.. 2011. "Refining the biological factors affecting virulence of Botryosphaeriaceae on grapevines." Annals of Applied Biology. 159 (3), pp. 467-477. https://doi.org/10.1111/j.1744-7348.2011.00508.x
Black scab of jojoba (simmondsia chinensis) in Australia caused by a putative new pathotype of elsinoë Australis
Ash, G. J., Stodart, B. and Hyun, J. W.. 2012. "Black scab of jojoba (simmondsia chinensis) in Australia caused by a putative new pathotype of elsinoë Australis." Plant Disease: an international journal of applied plant pathology. 96 (5), pp. 629-634. https://doi.org/10.1094/PDIS-06-11-0465
Evaluation of resistance to Phomopsis stem blight (caused by Diaporthe toxica) in Lupinus albus
Cowley, Raymond B., Ash, Gavin J., Harper, John D. I. and Luckett, David J.. 2012. "Evaluation of resistance to Phomopsis stem blight (caused by Diaporthe toxica) in Lupinus albus." European Journal of Plant Pathology. 133 (3), pp. 631-644. https://doi.org/10.1007/s10658-012-9942-3
Development of a reliable and rapid detached leaf assay to detect resistance to the fungal disease phomopsis leaf blight, caused by Diaporthe toxica, in Lupinus albus
Cowley, Raymond B., Luckett, David J., Harper, John D. I. and Ash, Gavin J.. 2012. "Development of a reliable and rapid detached leaf assay to detect resistance to the fungal disease phomopsis leaf blight, caused by Diaporthe toxica, in Lupinus albus." Canadian Journal of Plant Pathology. 34 (3), pp. 401-409. https://doi.org/10.1080/07060661.2012.705327
Application of multi-phase experiments in plant pathology to identify genetic resistance to Diaporthe toxica in Lupinus albus
Cowley, R. B., Ash, G. J., Harper, J. D I, Smith, A. B., Cullis, B. R. and Luckett, D. J.. 2012. "Application of multi-phase experiments in plant pathology to identify genetic resistance to Diaporthe toxica in Lupinus albus." Euphytica: international journal on plant breeding. 186 (3), pp. 655-669. https://doi.org/10.1007/s10681-011-0529-4
Three long-term trials end with a quasi-equilibrium between soil C, N, and pH: an implication for C sequestration
Conyers, Mark, Newton, Philip, Condon, Jason, Poile, Graeme, Mele, Pauline and Ash, Gavin. 2012. "Three long-term trials end with a quasi-equilibrium between soil C, N, and pH: an implication for C sequestration." Soil Research. 50 (7), pp. 527-535. https://doi.org/10.1071/SR12185
Draft genome sequence of Bacillus thuringiensis strain DAR 81934, which exhibits molluscicidal activity.
Wang, Aisuo, Pattemore, Julie, Ash, Gavin, Williams, Angela, Hane, James, Wang, Aisuo, Pattemore, Julie, Ash, Gavin, Williams, Angela and Hane, James. 2013. Draft genome sequence of Bacillus thuringiensis strain DAR 81934, which exhibits molluscicidal activity. United States. https://doi.org/10.1128/genomeA.00175-12
Plant-parasitic nematodes of potential phytosanitary importance, their main hosts and reported yield losses
Singh, S. K., Hodda, M. and Ash, G. J.. 2013. "Plant-parasitic nematodes of potential phytosanitary importance, their main hosts and reported yield losses." EPPO Bulletin. 43 (2), pp. 334-374. https://doi.org/10.1111/epp.12050
Construction of integrated linkage map of a recombinant inbred line population of white lupin (Lupinus albus L.)
Vipin, Cina Ann, Luckett, David J., Harper, John D. I., Ash, Gavin J., Kilian, Andrzej, Ellwood, Simon R., Phan, Huyen T. T. and Raman, Harsh. 2013. "Construction of integrated linkage map of a recombinant inbred line population of white lupin (Lupinus albus L.)." Breeding Science. 63 (3), pp. 292-300. https://doi.org/10.1270/jsbbs.63.292
Phomentrioloxin, a Fungal Phytotoxin with Potential Herbicidal Activity, and its Derivatives: A Structure−Activity Relationship Study
Cimmino, Alessio, Andolfi, Anna, Zonno, Maria Chiara, Boari, Angela, Troise, Ciro, Motta, Andrea, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2013. "Phomentrioloxin, a Fungal Phytotoxin with Potential Herbicidal Activity, and its Derivatives: A Structure−Activity Relationship Study." Journal of Agricultural and Food Chemistry. 61 (40), pp. 9645-9649. https://doi.org/10.1021/jf4030618
Screening of tropical isolates of Metarhizium anisopliae (Hypocreales: Clavicipitaceae) for virulence to the sweet potato weevil, Cylas formicarius (Coleoptera: Brentidae)
Dotaona, Ronnie, Wilson, Bree A. L., Stevens, Mark M., Holloway, Joanne and Ash, Gavin J.. 2015. "Screening of tropical isolates of Metarhizium anisopliae (Hypocreales: Clavicipitaceae) for virulence to the sweet potato weevil, Cylas formicarius (Coleoptera: Brentidae)." International Journal of Tropical Insect Science. 35 (4), pp. 153-163. https://doi.org/10.1017/S1742758415000211
Novel species of Cercospora and Pseudocercospora (Capnodiales, Mycosphaerellaceae) from Australia
Shivas, Roger Graham, Marney, Thomas Stephen, Tan, Yu Pei and McTaggart, Alistair Ross. 2015. "Novel species of Cercospora and Pseudocercospora (Capnodiales, Mycosphaerellaceae) from Australia." Fungal Biology. 119 (5), pp. 362-369. https://doi.org/10.1016/j.funbio.2014.09.004
A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex
Manamgoda, Dimuthu S., Cai, Lei, McKenzie, Eric H. C., Crous, Pedro W., Madrid, Hugo, Chukeatirote, Ekachai, Shivas, Roger G., Tan, Yu Pei and Hyde, Kevin D.. 2012. "A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex." Fungal Diversity. 56 (1), pp. 131-144. https://doi.org/10.1007/s13225-012-0189-2
Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia
Tan, Y. P., Edwards, J., Grice, K. R E and Shivas, R. G.. 2013. "Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia." Fungal Diversity. 61 (1), pp. 251-260. https://doi.org/10.1007/s13225-013-0242-9
Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews
Thines, Marco, Telle, Sabine, Choi, Young Joon, Tan, Yu Pei and Shivas, Roger G.. 2015. "Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews." IMA Fungus: the global mycological journal. 6 (2), pp. 483-491. https://doi.org/10.5598/imafungus.2015.06.02.12
Novel Pathotypes of Elsinoë australis Associated with Citrus australasica and Simmondsia chinensis in Australia
Miles, Andrew K., Tan, Yu Pei, Shivas, Roger G. and Drenth, André. 2015. "Novel Pathotypes of Elsinoë australis Associated with Citrus australasica and Simmondsia chinensis in Australia." Tropical Plant Pathology. 40 (1), pp. 26-34. https://doi.org/10.1007/s40858-015-0005-0
Colletotrichum species in Australia
Shivas, Roger G., Tan, Yu Pei, Edwards, Jacqueline, Dinh, Quang, Maxwell, Aaron, Andjic, Vera, Liberato, José R., Anderson, Chris, Beasley, Dean R., Bransgrove, Kaylene, Coates, Lindy M., Cowan, Karren, Daniel, Rosalie, Dean, Jan R., Lomavatu, Mereia Fong, Mercado-Escueta, Doris, Mitchell, Roger W., Thangavel, Raja, Tran-Nguyen, Lucy T T and Weir, Bevan S.. 2016. "Colletotrichum species in Australia." Australasian Plant Pathology. 45 (5), pp. 447-464. https://doi.org/10.1007/s13313-016-0443-2
Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP)
Tan, Yu Pei, Shivas, Roger G. and Crous, Pedro W.. 2016. "Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP)." Mycological Progress: international journal of fungal sciences. 15 (10-11), pp. 1203-1214. https://doi.org/10.1007/s11557-016-1240-6
Phyllosticta species on orchids (Orchidaceae), introducing Phyllosticta speewahensis sp. nov. (Phyllostictaceae, Ascomycota) from northern Australia
Shivas, Roger Graham, Tan, Yu Pei and Grice, Kathy R. E.. 2013. "Phyllosticta species on orchids (Orchidaceae), introducing Phyllosticta speewahensis sp. nov. (Phyllostictaceae, Ascomycota) from northern Australia." Sydowia: an international journal of mycology. 65 (1), pp. 139-146.
Coconut lethal yellowing diseases: a phytoplasma threat to palms of global economic and social significance
Gurr, Geoff M., Johnson, Anne C., Ash, Gavin J., Wilson, Bree A. L., Ero, Mark M., Pilotti, Carmel A., Dewhurst, Charles F. and You, Minsheng S.. 2016. "Coconut lethal yellowing diseases: a phytoplasma threat to palms of global economic and social significance." Frontiers in Plant Science. 7, pp. 1-21. https://doi.org/10.3389/fpls.2016.01521
Determining putative vectors of the Bogia Coconut Syndrome Phytoplasma using loop-mediated isothermal amplification of single insect-feeding media
Lu, Hengyu, Wilson, Bree A. L., Ash, Gavin J., Woruba, Sharon B., Fletcher, Murray J., You, Minsheng, Yang, Guang and Gurr, Geoff M.. 2016. "Determining putative vectors of the Bogia Coconut Syndrome Phytoplasma using loop-mediated isothermal amplification of single insect-feeding media." Scientific Reports. 6, pp. 1-10. https://doi.org/10.1038/srep35801
Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A., Nelson, Scot C. and Pethybridge, Sarah J.. 2017. "Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing." PLoS One. 12 (10). https://doi.org/10.1371/journal.pone.0186488
Abscisic acid activates pathogenesis-related defense gene signaling in lentils
Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270
Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii
Vaghefi, Niloofar, Nelson, Scot C., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii." Scientific Reports. 7. https://doi.org/10.1038/s41598-017-01929-4
De novo genome assembly of Cercospora beticola for microsatellite marker development and validation
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2017. "De novo genome assembly of Cercospora beticola for microsatellite marker development and validation." Fungal Ecology. 26, pp. 125-134. https://doi.org/10.1016/j.funeco.2017.01.006
Management of cercospora leaf spot in conventional and organic table beet production
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Management of cercospora leaf spot in conventional and organic table beet production." Plant Disease: an international journal of applied plant pathology. 101 (9), pp. 1642-1651. https://doi.org/10.1094/PDIS-04-17-0528-RE
Bacterial biocontrol of diseases caused by Sclerotinia in Australia
Kamal, M. M., Lindbeck, K., Savocchia, S. and Ash, G. J.. 2015. "Bacterial biocontrol of diseases caused by Sclerotinia in Australia." Acta Horticulturae. 1105, pp. 123-130. https://doi.org/10.17660/ActaHortic.2015.1105.18
Effects of temperature and water stress on the virulence of Botryosphaeriaceae spp. causing dieback of grapevines and their predicted distribution using CLIMEX in Australia
Qiu, Y., Steel, C. C., Ash, G. J. and Savocchia, S.. 2016. "Effects of temperature and water stress on the virulence of Botryosphaeriaceae spp. causing dieback of grapevines and their predicted distribution using CLIMEX in Australia." Acta Horticulturae. 1115, pp. 171-181. https://doi.org/10.17660/ActaHortic.2016.1115.26
Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management
Vaghefi, N., Kikkert, J. and Pethybridge, S.. 2016. "Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management." 76th Annual Meeting of the Northeastern Division: The American Phytopathological Society. Ithaca, United States 19 - 21 Oct 2016 United States. American Phytopathological Society. https://doi.org/10.1094/PHYTO-107-2-S2.5
Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia
Vaghefi, N., Hay, F. S., Ades, P. K., Pethybridge, S. J., Ford, R. and Taylor, P. W. J.. 2014. "Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia." 10th International Mycological Congress (IMC10 2014). Bangkok, Thailand 03 - 08 Aug 2014
Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W.. 2012. "Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia." 2012 American Phytopathological Society Annual Meeting (APS 2012). Rhode Island, United States of America 04 - 08 Aug 2012 United States. American Phytopathological Society.
Incidence and pathogenicity of Didymella americana on table beet in new york
Vaghefi, Niloofar, Kikkert, Julie R. and Pethybridge, Sarah J.. 2016. "Incidence and pathogenicity of Didymella americana on table beet in new york." Plant Health Progress. 17, pp. 270-272. https://doi.org/10.1094/PHP-BR-16-0064
First record of Ustilago sporoboli-indici in Australia
Vitelli, J. S., Tan, Y. P., Riding, N., Holdom, D. G., Chamberlain, A. and Shivas, R.G.. 2017. "First record of Ustilago sporoboli-indici in Australia." Australasian Plant Disease Notes. 12 (1), pp. 1-3. https://doi.org/10.1007/s13314-017-0277-y
A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis
Vaghefi, Niloofar, Mustafa, Barkat M., Dulal, Nabeen, Selby-Pham, Jamie, Taylor, Paul W. J. and Ford, Rebecca. 2013. "A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis." Phytopathologia Mediterranea. 52 (1), pp. 192-201.
A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov.
Barimani, M., Pethybridge, S. J., Vaghefi, N., Hay, F. S. and Taylor, P. W. J.. 2013. "A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov." Plant Pathology. 62 (6), pp. 1248-1257. https://doi.org/10.1111/ppa.12054
Stagonosporopsis spp. associated with ray blight disease of Asteraceae
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W. J.. 2012. "Stagonosporopsis spp. associated with ray blight disease of Asteraceae." Australasian Plant Pathology. 41 (6), pp. 675-686. https://doi.org/10.1007/s13313-012-0161-3
Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields
Vaghefi, Niloofar, Ades, Peter K., Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2015. "Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields." Fungal Biology. 119 (5), pp. 408-419. https://doi.org/10.1016/j.funbio.2014.04.004
Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight
Vaghefi, Niloofar, Pethybridge, Sarah J., Hay, Frank S., Ford, Rebecca, Nicolas, Marc E. and Taylor, Paul W. J.. 2016. "Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight." Australasian Plant Pathology. 45 (6), pp. 561-570. https://doi.org/10.1007/s13313-016-0446-z
Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae
Vaghefi, Niloofar, Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2016. "Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae." European Journal of Plant Pathology. 146 (3), pp. 581-595. https://doi.org/10.1007/s10658-016-0944-4
Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York
Vaghefi, Niloofar, Hay, Frank S., Kikkert, Julie and Pethybridge, Sarah J.. 2016. "Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York." Plant Disease: an international journal of applied plant pathology. 100 (7), pp. 1466-1473. https://doi.org/10.1094/PDIS-09-15-1014-RE
Rapid marker-assisted selection of antifungal Bacillus species from the canola rhizosphere
Kamal, Mohd. Mostofa, Savocchia, Sandra, Lindbeck, Kurt D. and Ash, Gavin J.. 2017. "Rapid marker-assisted selection of antifungal Bacillus species from the canola rhizosphere." Plant Gene. 11, pp. 23-30. https://doi.org/10.1016/j.plgene.2016.10.002
First report of Botryosphaeria dothidea causing shoot blight and cankers of pistachio in Australia
Wunderlich, Nicola, Costa, Severino Sousa, Tpoi, Roni Pati and Ash, Gavin James. 2012. "First report of Botryosphaeria dothidea causing shoot blight and cankers of pistachio in Australia." Australasian Plant Disease Notes. 7 (1), pp. 47-49. https://doi.org/10.1007/s13314-012-0045-y
One stop shop: backbone trees for important phytopathogenic genera: I (2014)
Hyde, Kevin D., Nilsson, R. Henrik, Alias, S. Aisyah, Ariyawansa, Hiran A., Blair, Jaime E., Cai, Lei, de Cock, Arthur W. A. M., Dissanayake, Asha J., Glockling, Sally L., Goonasekara, Ishani D., Gorczak, Michal, Hahn, Matthias, Jayawardena, Ruvishika S., van Kan, Jan A. L., Lawrence, Matthew H., Levesque, C. Andre, Li, Xinghong, Liu, Jian-Kui, Maharachchikumbura, Sajeewa S. N., ..., Zhou, Nan. 2014. "One stop shop: backbone trees for important phytopathogenic genera: I (2014)." Fungal Diversity. 67 (1), pp. 21-125. https://doi.org/10.1007/s13225-014-0298-1
The Colletotrichum boninense species complex
Damm, U., Cannon, P. F., Woudenberg, J. H C., Johnston, P. R., Weir, B. S., Tan, Y. P., Shivas, R. G. and Crous, P. W.. 2012. "The Colletotrichum boninense species complex." Studies in Mycology. 73 (73), pp. 1-36. https://doi.org/10.3114/sim0002
Pathogenicity studies in avocado with three nectriaceous fungi, Calonectria ilicicola, Gliocladiopsis sp. and Ilyonectria liriodendri
Dann, E. K., Cooke, A. W., Forsberg, L. I., Pegg, K. G., Tan, Y. P. and Shivas, R. G.. 2012. "Pathogenicity studies in avocado with three nectriaceous fungi, Calonectria ilicicola, Gliocladiopsis sp. and Ilyonectria liriodendri." Plant Pathology. 61 (5), pp. 896-902. https://doi.org/10.1111/j.1365-3059.2011.02579.x
Fungal planet description sheets: 128-153
Crous, P. W., Shivas, R. G., Wingfield, M. J., Summerell, B. A., Rossman, A. Y., Alves, J. L., Adams, G. C., Barreto, R. W., Bell, A., Coutinho, M. L., Lombard, L., Quaedvlieg, W., Videira, S. I R, Groenewald, J. Z., Tan, Y. P., Mahoney, D. P., Macedo, F., Flory, S. L., Gates, G., ..., Walker, D. M.. 2012. "Fungal planet description sheets: 128-153." Persoonia. 29, pp. 146-201. https://doi.org/10.3767/003158512X661589
Fungal planet description sheets: 214-280
Crous, P. W., Shivas, R. G., Quaedvlieg, W., Lombard, L., Groenewald, J. Z., van der Bank, M., Zhang, Y., Summerell, B. A., Guarro, J., Wingfield, M. J., Tan, Y. P., Cano-Lira, J. F., García, D., Marin-Felix, Y., Alvarado, P., Gené, J., Hernández-Restrepo, M., Marin-Felix, Y., Stchigel, A. M., ..., Wong, P. T. W.. 2014. "Fungal planet description sheets: 214-280." Persoonia. 32, pp. 184-306. https://doi.org/10.3767/003158514X682395
Fungal planet description sheets: 371–399
Crous, P. W., Wingfield, M. J., Le Roux, J. J., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G., Sharma, R., Sonawane, M. S., Tan, Y. P., Altes, A., Barasubiye, T., Barnes, C. W., Blanchette, R. A., Boertmann, D., Bogo, A., Carlavilla, J. R., ..., Groenewald, J. Z.. 2015. "Fungal planet description sheets: 371–399." Persoonia. 35, pp. 264-327. https://doi.org/10.3767/003158515X690269
Fungal planet description sheets: 469-557
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Crane, C., Barrett, S., Cano-Lira, J. F., Le Roux, J. J., Thangavel, R., Guarro, J., Stchigel, A. M., Martin, M. P., Alfredo, D. S., Barber, P. A., Barreto, R. W., Baseia, I. G., Cano-Canals, J., Cheewangkoon, R., Ferreira, R. J., ..., Groenewald, J. Z.. 2016. "Fungal planet description sheets: 469-557." Persoonia. 37, pp. 218-403. https://doi.org/10.3767/003158516X694499
Colletotrichum siamense, C. theobromicola and C. queenslandicum, from several plant species and the identification of C. asianum in the Northern Territory, Australia
James, R. S., Ray, J., Tan, Y. P. and Shivas, R. G.. 2014. "Colletotrichum siamense, C. theobromicola and C. queenslandicum, from several plant species and the identification of C. asianum in the Northern Territory, Australia." Australasian Plant Disease Notes. 9 (1), pp. 138-138. https://doi.org/10.1007/s13314-014-0138-x
Elucidation of the taxonomy and pathological status of Pyricularia associated with banana blast in Australia
Male, Mike F., Tan, Yu Pei, Vawdrey, Lynton L. and Shivas, Roger G.. 2011. "Elucidation of the taxonomy and pathological status of Pyricularia associated with banana blast in Australia." Australasian Plant Disease Notes. 6 (1), pp. 22-25. https://doi.org/10.1007/s13314-011-0008-8
First report of shoot blight of persimmon caused by Diaporthe neotheicola in Australia
Golzar, H., Wang, C., Tan, Y. P. and Shivas, R. G.. 2012. "First report of shoot blight of persimmon caused by Diaporthe neotheicola in Australia." Australasian Plant Disease Notes. 7 (1), pp. 115-117. https://doi.org/10.1007/s13314-012-0061-y
First report of Phoma multirostrata in Australia
Golzar, H., Lanoiselet, V., Wang, C., Tan, Y. P. and Shivas, R. G.. 2015. "First report of Phoma multirostrata in Australia." Australasian Plant Disease Notes. 10 (1), pp. 8-9. https://doi.org/10.1007/s13314-015-0161-6
A new host genus and species (Afzelia xylocarpa) for Phakopsora pachyrhizi found in Thailand
Seemadua, Suneerat, Bhasabutra, Tharntip, Beasley, Dean R., Tan, Yu Pei and Shivas, Roger G.. 2012. "A new host genus and species (Afzelia xylocarpa) for Phakopsora pachyrhizi found in Thailand." Australasian Plant Disease Notes. 7 (1), pp. 125-126. https://doi.org/10.1007/s13314-012-0064-8
Recovery, pathogenicity and molecular sequencing of Calonectria ilicicola which causes collar rot on Carica papaya in Australia
Male, M. F., Tan, Y. P., Vawdrey, L. L. and Shivas, R. G.. 2012. "Recovery, pathogenicity and molecular sequencing of Calonectria ilicicola which causes collar rot on Carica papaya in Australia." Australasian Plant Disease Notes. 7 (1), pp. 137-138. https://doi.org/10.1007/s13314-012-0068-4
Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii
Vaghefi, Niloofar, Pethybridge, Sarah J., Shivas, Roger G. and Nelson, Scot C.. 2016. "Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii." Australasian Plant Disease Notes. 11 (1), pp. 35-37. https://doi.org/10.1007/s13314-016-0223-4
Review of Fusarium species isolated in association with mango malformation in Australia
Liew, E. C. Y., Laurence, M. H., Pearce, C. A., Shivas, R. G., Johnson, G. I., Tan, Y. P., Edwards, J., Perry, S., Cooke, A. W. and Summerell, B. A.. 2016. "Review of Fusarium species isolated in association with mango malformation in Australia." Australasian Plant Pathology. 45 (6), pp. 547-559. https://doi.org/10.1007/s13313-016-0454-z
Detection of Fusarium oxysporum f. sp. cubense tropical race 4 strain in northern Queensland
O'Neill, W. T., Pattemore, J. A., Perry, S., Beasley, D. R., Tan, Y. P., Smyth, A. L., Goosem, C. H., Thomson, K. M., Hobbs, R. L., Shivas, R. G., Henderson, J., O'Dwyer, C., Grice, K. R. E., Trevorrow, P., Pathania, N. and Vawdrey, L. L.. 2016. "Detection of Fusarium oxysporum f. sp. cubense tropical race 4 strain in northern Queensland." Australasian Plant Disease Notes. 11 (33), pp. 33-35. https://doi.org/10.1007/s13314-016-0218-1
Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages
Adorada, Dante L., Stodart, B. J., Vera Cruz, C., Gregorio, G., Pangga, I. and Ash, G. J.. 2013. "Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages." Euphytica: international journal on plant breeding. 192 (1), pp. 1-16. https://doi.org/10.1007/s10681-012-0804-z
Arbuscular mycorrhizal fungal diversity in perennial pastures; responses to long-term lime application
Guo, Y. J., Ni, Y., Raman, H., Wilson, B. A. L., Ash, G. J., Wang, A. S. and Li, G. D.. 2012. "Arbuscular mycorrhizal fungal diversity in perennial pastures; responses to long-term lime application." Plant and Soil: international journal on plant-soil relationships. 351 (1-2), pp. 389-403. https://doi.org/10.1007/s11104-011-0976-7
Arbuscular mycorrhizal fungi improve the growth and nodulation of the annual legume messina (Melilotus siculus) under saline and non-saline conditions
Wilson, B. A. L., Ash, G. J. and Harper, J. D. I.. 2012. "Arbuscular mycorrhizal fungi improve the growth and nodulation of the annual legume messina (Melilotus siculus) under saline and non-saline conditions." Crop and Pasture Science. 63 (2), pp. 164-178. https://doi.org/10.1071/CP11193
Phloem parenchyma transfer cells in Arabidopsis – an experimental system to identify transcriptional regulators of wall ingrowth formation
Arun Chinnappa, Kiruba S., Nguyen, Thi Thu S., Hou, Jiexi, Wu, Yuzhou and McCurdy, David. 2013. "Phloem parenchyma transfer cells in Arabidopsis – an experimental system to identify transcriptional regulators of wall ingrowth formation." Frontiers in Plant Science. 4 (April), pp. 1-6. https://doi.org/10.3389/fpls.2013.00102
De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research
Arun-Chinnappa, Kiruba S. and McCurdy, David W.. 2015. "De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research." Frontiers in Plant Science. 6 (April), pp. 1-9. https://doi.org/10.3389/fpls.2015.00217
Plant-parasitic nematodes as invasive species: Characteristics, uncertainty and biosecurity implications
Singh, S. K., Hodda, M., Ash, G. J. and Banks, N. C.. 2013. "Plant-parasitic nematodes as invasive species: Characteristics, uncertainty and biosecurity implications." Annals of Applied Biology. 163 (3), pp. 323-350. https://doi.org/10.1111/aab.12065
Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity
Adorada, Dante L., Stodart, Benjamin J., Tpoi, Roni P., Costa, Severino S. and Ash, Gavin J.. 2013. "Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity." Australasian Plant Disease Notes. 8 (1), pp. 43-47. https://doi.org/10.1007/s13314-013-0092-z
Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice
Ash, Gavin J., Lang, Jillian M., Triplett, Lindsay R., Stodart, Benjamin J., Verdier, Valerie, Vera Cruz, Casiana, Rott, Philippe and Leach, Jan E.. 2014. "Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice ." Plant Disease: an international journal of applied plant pathology. 98 (7), pp. 909-915. https://doi.org/10.1094/PDIS-09-13-0957-RE
Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae
Patel, Hitendra Kumar, Matiuzzo, Maura, Bertani, Iris, Bigirimana, Vincent De Paul, Ash, Gavin J., Hofte, Monica and Venturi, Vittoria. 2014. "Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae." BMC Microbiology. 14 (274), pp. 1-13. https://doi.org/10.1186/s12866-014-0274-7
Identification of QTLs associated with resistance to phomopsis pod blight (Diaporthe toxica) in Lupinus albus
Cowley, Raymond, Luckett, David J., Ash, Gavin J., Harper, John D. I., Vipin, Cina A., Raman, Harsh and Ellwood, Simon. 2014. "Identification of QTLs associated with resistance to phomopsis pod blight (Diaporthe toxica) in Lupinus albus." Breeding Science. 64 (1), pp. 83-89. https://doi.org/10.1270/jsbbs.64.83
Prioritising plant-parasitic nematode species biosecurity risks using self organising maps
Singh, Sunil K., Paini, Dean R., Ash, Gavin J. and Hodda, Mike. 2014. "Prioritising plant-parasitic nematode species biosecurity risks using self organising maps." Biological Invasions. 16 (7), pp. 1515-1530. https://doi.org/10.1007/s10530-013-0588-7
Responses of physiological indexes and leaf epicuticular waxes of Brassica napus to Sclerotinia sclerotiorum infection
Ni, Y., Guo, Y. -J., Wang, J., Xia, R. -E., Wang, X. -Q., Ash, G. and Li, J. -N.. 2014. "Responses of physiological indexes and leaf epicuticular waxes of Brassica napus to Sclerotinia sclerotiorum infection." Plant Pathology. 63 (1), pp. 174-184. https://doi.org/10.1111/ppa.12060
The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species
Pattemore, Julie A., Hane, James K., Williams, Angela H., Wilson, Bree A. L., Stodart, Ben J. and Ash, Gavin J.. 2014. "The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species." BMC Genomics. 15 (1), pp. 1-15. https://doi.org/10.1186/1471-2164-15-660
Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment
Singh, Sunil K., Ash, Gavin J. and Hodda, Mike. 2015. "Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment." Biological Invasions. 17 (4), pp. 1069-1086. https://doi.org/10.1007/s10530-014-0776-0
Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment
Adorada, D. L., Stodart, B. J., Pangga, I. B. and Ash, G. J.. 2015. "Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment." Plant Pathology. 64 (1), pp. 43-50. https://doi.org/10.1111/ppa.12243
Hierarchical genetic variation of Botryosphaeriaceae species associated with decline and dieback of grapevine in south-eastern Australia
Qui, Y., Steel, C. C., Ash, G. J. and Savocchia, S.. 2015. "Hierarchical genetic variation of Botryosphaeriaceae species associated with decline and dieback of grapevine in south-eastern Australia." Australian Journal of Grape and Wine Research. 21 (3), pp. 458-467. https://doi.org/10.1111/ajgw.12144
Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus)
Andolfi, Anna, Boari, Angela, Evidente, Marco, Cimmino, Alessio, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2015. "Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus)." Journal of Natural Products. 78 (4), pp. 623-629. https://doi.org/10.1021/np500570h
Structure and Absolute Configuration of Kongiidiazadione, a NewPhytotoxic 3-Substituted-5-Diazenylcyclopentendione Produced by Diaporthe Kongii
Evidente, Marco, Boari, Angela, Vergura, Stefania, Cimmino, Alessio, Vurro, Maurizio, Ash, Gavin, Superchi, Stefano and Evidente, Antonio. 2015. "Structure and Absolute Configuration of Kongiidiazadione, a NewPhytotoxic 3-Substituted-5-Diazenylcyclopentendione Produced by Diaporthe Kongii." Chirality: the pharmacological, biological, and chemical consequences of molecular asymmetry. 27 (9), pp. 557-562. https://doi.org/10.1002/chir.22466
Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)
Wang, Aisuo and Ash, Gavin J.. 2015. "Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)." Scientific Reports. 5, pp. 1-14. https://doi.org/10.1038/srep13644
Biological control of sclerotinia stem rot of canola using antagonistic bacteria
Kamal, M. M., Lindbeck, K. D., Savocchia, S. and Ash, G. J.. 2015. "Biological control of sclerotinia stem rot of canola using antagonistic bacteria ." Plant Pathology. 64 (6), pp. 1375-1384. https://doi.org/10.1111/ppa.12369
Biology and biocontrol of Sclerotinia sclerotiorum (Lib.) de Bary in oilseed Brassicas
Kamal, Mohd. Mostofa, Savocchia, Sandra, Lindbeck, Kurt D. and Ash, Gavin J.. 2016. "Biology and biocontrol of Sclerotinia sclerotiorum (Lib.) de Bary in oilseed Brassicas." Australasian Plant Pathology. 45 (1), pp. 1-14. https://doi.org/10.1007/s13313-015-0391-2
Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons
Arun-Chinnappa, Kiruba S. and McCurdy, David W.. 2016. "Identification of candidate transcriptional regulators of epidermal transfer cell development in Vicia faba cotyledons." Frontiers in Plant Science. 7, pp. 1-12. https://doi.org/10.3389/fpls.2016.00717
Green and brown bridges between weeds and crops reveal novel Diaporthe species in Australia
Thompson, S. M., Tan, Y. P., Shivas, R. G., Neate, S. M., Morin, L., Bissett, A. and Aitken, E. A. B.. 2015. "Green and brown bridges between weeds and crops reveal novel Diaporthe species in Australia." Persoonia. 35, pp. 39-49. https://doi.org/10.3767/003158515X687506
Fungal Planet description sheets: 281-319
Crous, P., Wingfield, M., Schumacher, R., Summerell, B., Giraldo, A., Gene, J., Guarro, J., Wanasinghe, D., Hyde, K., Camporesi, E., Jones, E., Thambugala, K., Malysheva, E., Malysheva, V., Acharya, K., Alvarez, J., Alvarado, P., Assefa, A., Barnes, C. W., ..., Groenewald, J.. 2014. "Fungal Planet description sheets: 281-319." Persoonia. 33, pp. 212-292. https://doi.org/10.3767/003158514X685680
Fusarium thapsinum is the dominant species associated with sorghum stalk rot in Queensland and northern New South Wales
Kelly, L., Tan, Y. P., Ryley, M. and Aitken, E.. 2011. "Fusarium thapsinum is the dominant species associated with sorghum stalk rot in Queensland and northern New South Wales." Tran-Nguyen, Lucy (ed.) 4th Asian Conference on Plant Pathology and the 18th Biennial Australasian Plant Pathology Society Conference (ACPP/APPS 2011): New Frontiers in Plant Pathology for Asia and Oceania. Darwin, Australia 26 - 29 Apr 2011 Toowoomba, Australia.
Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species
Thompson, S. M., Tan, Y. P., Young, A. J., Neate, S. M., Aitken, E. A. B. and Shivas, R. G.. 2011. "Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species." Persoonia. 27, pp. 80-89. https://doi.org/10.3767/003158511X617110
Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae
Ash, G. J., Lang, J. M., Triplett, L. R., Stodart, B. J., Verdier, V. and Leach, J. E.. 2013. "Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae." 2013 APS-MSA Joint Meeting. United States 10 - 14 Aug 2013 United States. American Phytopathological Society.
Phyllosticta spp. on cultivated Citrus in Australia
Miles, A. K., Tan, Y. P., Tan, M. K., Donovan, N. J., Ghalayini, A. and Drenth, A.. 2013. "Phyllosticta spp. on cultivated Citrus in Australia ." Australasian Plant Pathology. 42 (4), pp. 461-467. https://doi.org/10.1007/s13313-013-0208-0
Phomentrioloxin: A Phytotoxic Pentasubstituted Geranylcyclohexentriol Produced by Phomopsis sp., a Potential Mycoherbicide for Carthamus lanatus Biocontrol
Cimmino, Alessio, Andolfi, Anna, Zonno, Maria C., Troise, Ciro, Santini, Antonello, Tuzi, Angela, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2012. "Phomentrioloxin: A Phytotoxic Pentasubstituted Geranylcyclohexentriol Produced by Phomopsis sp., a Potential Mycoherbicide for Carthamus lanatus Biocontrol." Journal of Natural Products. 75 (6), pp. 1130-1137. https://doi.org/10.1021/np300200j
A case for re-inventory of Australia's plant pathogens
Hyde, K. D., Chomnunti, P., Crous, P. W., Groenewald, J. Z., Damm, U., Ko, T. W. Ko, Shivas, R. G., Summerell, B. A. and Tan, Y. P.. 2010. "A case for re-inventory of Australia's plant pathogens." Persoonia. 25, pp. 50-60. https://doi.org/10.3767/003158510X548668
The science, art and business of successful bioherbicides
Ash, G. J.. 2010. "The science, art and business of successful bioherbicides." Biological Control. 52 (3), pp. 230-240. https://doi.org/10.1016/j.biocontrol.2009.08.007
The characterization and diversity of bacterial endophytes of grapevine
West, E. R., Cother, E. J., Steel, C. C. and Ash, G. J.. 2010. "The characterization and diversity of bacterial endophytes of grapevine." Canadian Journal of Microbiology. 56 (3), pp. 209-216. https://doi.org/10.1139/W10-004
Australia and New Zealand biocontrol conference: Emerging themes, future prospects
Gurr, Geoff M.., Horne, Paul, Page, Jessica, Ash, Gavin J. and Pilkington, Leigh J.. 2010. "Australia and New Zealand biocontrol conference: Emerging themes, future prospects." Biological Control. 52 (3), pp. 195-197. https://doi.org/10.1016/j.biocontrol.2010.01.001
Genotypic analysis of Mucor from the platypus in Australia
Connolly, J. H., Stodart, B. J. and Ash, G. J.. 2010. "Genotypic analysis of Mucor from the platypus in Australia." Journal of Wildlife Diseases. 46 (1), pp. 55-69. https://doi.org/10.7589/0090-3558-46.1.55
Austropleospora osteospermi gen. et sp. nov. and its host specificity and distribution on Chrysanthemoides monilifera ssp. rotundata in Australia
Morin, Louise, Shivas, R. G., Piper, M. C. and Tan, Y. P.. 2010. "Austropleospora osteospermi gen. et sp. nov. and its host specificity and distribution on Chrysanthemoides monilifera ssp. rotundata in Australia ." Fungal Diversity. 40 (1), pp. 65-74. https://doi.org/10.1007/s13225-009-0007-7
Development of strain specific molecular markers for the Sclerotinia minor bioherbicide strain IMI 344141
Pan, L., Ash, G. J., Ahn, B. and Watson, A. K.. 2010. "Development of strain specific molecular markers for the Sclerotinia minor bioherbicide strain IMI 344141." Biocontrol Science and Technology. 20 (9), pp. 939-959. https://doi.org/10.1080/09583157.2010.491895
Evidence that Diaporthe toxica infection of Lupinus albus is an emerging concern for the Australian lupin industry
Cowley, R. B., Ash, G. J., Harper, J. D. I. and Luckett, D. J.. 2010. "Evidence that Diaporthe toxica infection of Lupinus albus is an emerging concern for the Australian lupin industry." Australasian Plant Pathology. 39 (2), pp. 146-153. https://doi.org/10.1071/AP09067
Physiological characterization of the dandelion bioherbicide, Sclerotinia minor IMI 344141
Shaheen, In'aam Y., Abu-Dieyeh, Mohammed H., Ash, Gavin J. and Watson, Alan K.. 2010. "Physiological characterization of the dandelion bioherbicide, Sclerotinia minor IMI 344141." Biocontrol Science and Technology. 20 (1), pp. 57-76. https://doi.org/10.1080/09583150903419520
Random Mutagenesis Identifies Novel Genes Involved in the Secretion of Antimicrobial, Cell Wall-Lytic Enzymes by Lactococcus lactis
Tan, Yu Pei, Giffard, Philip M., Barry, Daniel G., Huston, Wilhelmina M. and Turner, Mark S.. 2008. "Random Mutagenesis Identifies Novel Genes Involved in the Secretion of Antimicrobial, Cell Wall-Lytic Enzymes by Lactococcus lactis." Applied and Environmental Microbiology. 74 (24), pp. 7490-7496. https://doi.org/10.1128/AEM.00767-08
Inactivation of an Iron Transporter in Lactococcus lactis Results in Resistance to Tellurite and Oxidative Stress
Turner, Mark S., Tan, Yu Pei and Giffard, Philip M.. 2007. "Inactivation of an Iron Transporter in Lactococcus lactis Results in Resistance to Tellurite and Oxidative Stress." Applied and Environmental Microbiology. 73 (19), pp. 6144-6149. https://doi.org/10.1128/AEM.00413-07
Influence of cultural and environmental conditions on conidial production, conidial germination and infectivity of Rhynchosporium alismatis, a candidate mycoherbicide
Jahromi, F. G., Ash, G. J. and Cother, E. J.. 1998. "Influence of cultural and environmental conditions on conidial production, conidial germination and infectivity of Rhynchosporium alismatis, a candidate mycoherbicide." Australasian Plant Pathology. 27 (3), pp. 180-185. https://doi.org/10.1071/AP98020
Suppressive effects of Rhynchosporium alismatis on different growth stages of Damasonium minus
Jahromi, F. G., Ash, G. J., Cother, E. J. and SOC ESPANOLA MALHERBOLOGIA. 1997. "Suppressive effects of Rhynchosporium alismatis on different growth stages of Damasonium minus." 1997 Congress of the Sociedad-Espanola-de-Malherbologia. Spain 24 - 26 Nov 1997 Spain.
Phomopsis spp. associated with die-back of saffron thistle (Carthamus lanatus)
Crump, N. S., Ash, G. J. and Nikandrow, A.. 1996. "Phomopsis spp. associated with die-back of saffron thistle (Carthamus lanatus)." Australasian Plant Pathology. 25 (2), p. 143. https://doi.org/10.1071/AP96025
Effect of Post-Inoculation Temperature and Light Intensity on Expression of Resistance to Stripe Rust in Some Australian Wheat Cultivars
Ash, G. J. and Rees, R. G.. 1994. "Effect of Post-Inoculation Temperature and Light Intensity on Expression of Resistance to Stripe Rust in Some Australian Wheat Cultivars." Australian Journal of Agricultural Research. 45 (7), pp. 1379-1386. https://doi.org/10.1071/AR9941379
Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici
Park, Robert F., Ash, Gavin J. and Rees, Robert G.. 1992. "Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici." Mycological Research. 96 (3), pp. 166-170. https://doi.org/10.1016/S0953-7562(09)80961-1
Yield losses in wheat caused by stripe rust (Puccinia striiformis West.) in northern New South Wales
Ash, G J.. and Brown, J. F.. 1990. "Yield losses in wheat caused by stripe rust (Puccinia striiformis West.) in northern New South Wales." Australian Journal of Experimental Agriculture. 30 (1), pp. 103-108. https://doi.org/10.1071/EA9900103