Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)
Article
Article Title | Whole genome phylogeny of Bacillus by feature frequency profiles (FFP) |
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ERA Journal ID | 201487 |
Article Category | Article |
Authors | Wang, Aisuo (Author) and Ash, Gavin J. (Author) |
Journal Title | Scientific Reports |
Journal Citation | 5, pp. 1-14 |
Number of Pages | 14 |
Year | 2015 |
Publisher | Nature Publishing Group |
Place of Publication | United Kingdom |
ISSN | 2045-2322 |
Digital Object Identifier (DOI) | https://doi.org/10.1038/srep13644 |
Web Address (URL) | http://www.nature.com/articles/srep13644 |
Abstract | Fifty complete Bacillus genome sequences and associated plasmids were compared using the “feature frequency profile” (FFP) method. The resulting whole-genome phylogeny supports the placement of three Bacillus species (B. thuringiensis, B. anthracis and B. cereus) as a single clade. The monophyletic status of B. anthracis was strongly supported by the analysis. FFP proved to be more effective in inferring the phylogeny of Bacillus than methods based on single gene sequences [16s rRNA gene, GryB (gyrase subunit B) and AroE (shikimate-5-dehydrogenase)] analyses. The findings of FFP analysis were verified using kSNP v2 (alignment-free sequence analysis method) and Harvest suite (core genome sequence alignment method). |
ANZSRC Field of Research 2020 | 310199. Biochemistry and cell biology not elsewhere classified |
519999. Other physical sciences not elsewhere classified | |
Byline Affiliations | Department of Primary Industries, New South Wales |
Charles Sturt University | |
Institution of Origin | University of Southern Queensland |
https://research.usq.edu.au/item/q394w/whole-genome-phylogeny-of-bacillus-by-feature-frequency-profiles-ffp
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