The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species

Article

Pattemore, Julie A., Hane, James K., Williams, Angela H., Wilson, Bree A. L., Stodart, Ben J. and Ash, Gavin J.. 2014. "The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species." BMC Genomics. 15 (1), pp. 1-15. https://doi.org/10.1186/1471-2164-15-660
Article Title

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species

ERA Journal ID2363
Article CategoryArticle
AuthorsPattemore, Julie A. (Author), Hane, James K. (Author), Williams, Angela H. (Author), Wilson, Bree A. L. (Author), Stodart, Ben J. (Author) and Ash, Gavin J. (Author)
Journal TitleBMC Genomics
Journal Citation15 (1), pp. 1-15
Article Number660
Number of Pages15
Year2014
PublisherBioMed Central Ltd.
Place of PublicationUnited Kingdom
ISSN1471-2164
Digital Object Identifier (DOI)https://doi.org/10.1186/1471-2164-15-660
Web Address (URL)http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-660
Abstract

Background: Metarhizium anisopliae is an important fungal biocontrol agent of insect pests of agricultural crops. Genomics can aid the successful commercialization of biopesticides by identification of key genes differentiating closely related species, selection of virulent microbial isolates which are amenable to industrial scale production and formulation and through the reduction of phenotypic variability. The genome of Metarhizium isolate ARSEF23 was recently published as a model for M. anisopliae, however phylogenetic analysis has since re-classified this isolate as M. robertsii. We present a new annotated genome sequence of M. anisopliae (isolate Ma69) and whole genome comparison to M. robertsii (ARSEF23) and M. acridum (CQMa 102).

Results: Whole genome analysis of M. anisopliae indicates significant macrosynteny with M. robertsii but with some large genomic inversions. In comparison to M. acridum, the genome of M. anisopliae shares lower sequence homology. While alignments overall are co-linear, the genome of M. acridum is not contiguous enough to conclusively observe macrosynteny. Mating type gene analysis revealed both MAT1-1 and MAT1-2 genes present in M. anisopliae suggesting putative homothallism, despite having no known teleomorph, in contrast with the putatively heterothallic M. acridum isolate CQMa 102 (MAT1-2) and M. robertsii isolate ARSEF23 (altered MAT1-1). Repetitive DNA and RIP analysis revealed M. acridum to have twice the repetitive content of the other two species and M. anisopliae to be five times more RIP affected than M. robertsii. We also present an initial bioinformatic survey of candidate pathogenicity genes in M. anisopliae.

Conclusions: The annotated genome of M. anisopliae is an important resource for the identification of virulence genes specific to M. anisopliae and development of species- and strain- specific assays. New insight into the possibility of homothallism and RIP affectedness has important implications for the development of M. anisopliae as a biopesticide as it may indicate the potential for greater inherent diversity in this species than the other species. This could present opportunities to select isolates with unique combinations of pathogenicity factors, or it may point to instability in the species, a negative attribute in a biopesticide.

KeywordsFungi; Metarhizium; Metarhizium anisopliae
ANZSRC Field of Research 2020310509. Genomics
Byline AffiliationsCharles Sturt University
Curtin University
Institution of OriginUniversity of Southern Queensland
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Detection of Fusarium oxysporum f. sp. cubense tropical race 4 strain in northern Queensland
O'Neill, W. T., Pattemore, J. A., Perry, S., Beasley, D. R., Tan, Y. P., Smyth, A. L., Goosem, C. H., Thomson, K. M., Hobbs, R. L., Shivas, R. G., Henderson, J., O'Dwyer, C., Grice, K. R. E., Trevorrow, P., Pathania, N. and Vawdrey, L. L.. 2016. "Detection of Fusarium oxysporum f. sp. cubense tropical race 4 strain in northern Queensland." Australasian Plant Disease Notes. 11 (33), pp. 33-35. https://doi.org/10.1007/s13314-016-0218-1
Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages
Adorada, Dante L., Stodart, B. J., Vera Cruz, C., Gregorio, G., Pangga, I. and Ash, G. J.. 2013. "Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages." Euphytica: international journal on plant breeding. 192 (1), pp. 1-16. https://doi.org/10.1007/s10681-012-0804-z
Arbuscular mycorrhizal fungal diversity in perennial pastures; responses to long-term lime application
Guo, Y. J., Ni, Y., Raman, H., Wilson, B. A. L., Ash, G. J., Wang, A. S. and Li, G. D.. 2012. "Arbuscular mycorrhizal fungal diversity in perennial pastures; responses to long-term lime application." Plant and Soil: international journal on plant-soil relationships. 351 (1-2), pp. 389-403. https://doi.org/10.1007/s11104-011-0976-7
Arbuscular mycorrhizal fungi improve the growth and nodulation of the annual legume messina (Melilotus siculus) under saline and non-saline conditions
Wilson, B. A. L., Ash, G. J. and Harper, J. D. I.. 2012. "Arbuscular mycorrhizal fungi improve the growth and nodulation of the annual legume messina (Melilotus siculus) under saline and non-saline conditions." Crop and Pasture Science. 63 (2), pp. 164-178. https://doi.org/10.1071/CP11193
The effects of defoliation on plant community, root biomass and nutrient allocation and soil chemical properties on semi-arid steppes in northern China
Guo, Y-J., Han, L., Li, G-D., Han, J-G., Wang, G-L., Li, Z-Y. and Wilson, B.. 2012. "The effects of defoliation on plant community, root biomass and nutrient allocation and soil chemical properties on semi-arid steppes in northern China." Journal of Arid Environments. 78, pp. 128-134. https://doi.org/10.1016/j.jaridenv.2011.11.003
Plant-parasitic nematodes as invasive species: Characteristics, uncertainty and biosecurity implications
Singh, S. K., Hodda, M., Ash, G. J. and Banks, N. C.. 2013. "Plant-parasitic nematodes as invasive species: Characteristics, uncertainty and biosecurity implications." Annals of Applied Biology. 163 (3), pp. 323-350. https://doi.org/10.1111/aab.12065
Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity
Adorada, Dante L., Stodart, Benjamin J., Tpoi, Roni P., Costa, Severino S. and Ash, Gavin J.. 2013. "Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity." Australasian Plant Disease Notes. 8 (1), pp. 43-47. https://doi.org/10.1007/s13314-013-0092-z
Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice
Ash, Gavin J., Lang, Jillian M., Triplett, Lindsay R., Stodart, Benjamin J., Verdier, Valerie, Vera Cruz, Casiana, Rott, Philippe and Leach, Jan E.. 2014. "Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice ." Plant Disease: an international journal of applied plant pathology. 98 (7), pp. 909-915. https://doi.org/10.1094/PDIS-09-13-0957-RE
Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae
Patel, Hitendra Kumar, Matiuzzo, Maura, Bertani, Iris, Bigirimana, Vincent De Paul, Ash, Gavin J., Hofte, Monica and Venturi, Vittoria. 2014. "Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae." BMC Microbiology. 14 (274), pp. 1-13. https://doi.org/10.1186/s12866-014-0274-7
Identification of QTLs associated with resistance to phomopsis pod blight (Diaporthe toxica) in Lupinus albus
Cowley, Raymond, Luckett, David J., Ash, Gavin J., Harper, John D. I., Vipin, Cina A., Raman, Harsh and Ellwood, Simon. 2014. "Identification of QTLs associated with resistance to phomopsis pod blight (Diaporthe toxica) in Lupinus albus." Breeding Science. 64 (1), pp. 83-89. https://doi.org/10.1270/jsbbs.64.83
Prioritising plant-parasitic nematode species biosecurity risks using self organising maps
Singh, Sunil K., Paini, Dean R., Ash, Gavin J. and Hodda, Mike. 2014. "Prioritising plant-parasitic nematode species biosecurity risks using self organising maps." Biological Invasions. 16 (7), pp. 1515-1530. https://doi.org/10.1007/s10530-013-0588-7
Responses of physiological indexes and leaf epicuticular waxes of Brassica napus to Sclerotinia sclerotiorum infection
Ni, Y., Guo, Y. -J., Wang, J., Xia, R. -E., Wang, X. -Q., Ash, G. and Li, J. -N.. 2014. "Responses of physiological indexes and leaf epicuticular waxes of Brassica napus to Sclerotinia sclerotiorum infection." Plant Pathology. 63 (1), pp. 174-184. https://doi.org/10.1111/ppa.12060
Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment
Singh, Sunil K., Ash, Gavin J. and Hodda, Mike. 2015. "Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment." Biological Invasions. 17 (4), pp. 1069-1086. https://doi.org/10.1007/s10530-014-0776-0
Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment
Adorada, D. L., Stodart, B. J., Pangga, I. B. and Ash, G. J.. 2015. "Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment." Plant Pathology. 64 (1), pp. 43-50. https://doi.org/10.1111/ppa.12243
Hierarchical genetic variation of Botryosphaeriaceae species associated with decline and dieback of grapevine in south-eastern Australia
Qui, Y., Steel, C. C., Ash, G. J. and Savocchia, S.. 2015. "Hierarchical genetic variation of Botryosphaeriaceae species associated with decline and dieback of grapevine in south-eastern Australia." Australian Journal of Grape and Wine Research. 21 (3), pp. 458-467. https://doi.org/10.1111/ajgw.12144
Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus)
Andolfi, Anna, Boari, Angela, Evidente, Marco, Cimmino, Alessio, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2015. "Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus)." Journal of Natural Products. 78 (4), pp. 623-629. https://doi.org/10.1021/np500570h
Structure and Absolute Configuration of Kongiidiazadione, a NewPhytotoxic 3-Substituted-5-Diazenylcyclopentendione Produced by Diaporthe Kongii
Evidente, Marco, Boari, Angela, Vergura, Stefania, Cimmino, Alessio, Vurro, Maurizio, Ash, Gavin, Superchi, Stefano and Evidente, Antonio. 2015. "Structure and Absolute Configuration of Kongiidiazadione, a NewPhytotoxic 3-Substituted-5-Diazenylcyclopentendione Produced by Diaporthe Kongii." Chirality: the pharmacological, biological, and chemical consequences of molecular asymmetry. 27 (9), pp. 557-562. https://doi.org/10.1002/chir.22466
Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)
Wang, Aisuo and Ash, Gavin J.. 2015. "Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)." Scientific Reports. 5, pp. 1-14. https://doi.org/10.1038/srep13644
Biological control of sclerotinia stem rot of canola using antagonistic bacteria
Kamal, M. M., Lindbeck, K. D., Savocchia, S. and Ash, G. J.. 2015. "Biological control of sclerotinia stem rot of canola using antagonistic bacteria ." Plant Pathology. 64 (6), pp. 1375-1384. https://doi.org/10.1111/ppa.12369
Biology and biocontrol of Sclerotinia sclerotiorum (Lib.) de Bary in oilseed Brassicas
Kamal, Mohd. Mostofa, Savocchia, Sandra, Lindbeck, Kurt D. and Ash, Gavin J.. 2016. "Biology and biocontrol of Sclerotinia sclerotiorum (Lib.) de Bary in oilseed Brassicas." Australasian Plant Pathology. 45 (1), pp. 1-14. https://doi.org/10.1007/s13313-015-0391-2
Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae
Ash, G. J., Lang, J. M., Triplett, L. R., Stodart, B. J., Verdier, V. and Leach, J. E.. 2013. "Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae." 2013 APS-MSA Joint Meeting. United States 10 - 14 Aug 2013 United States. American Phytopathological Society.
Phomentrioloxin: A Phytotoxic Pentasubstituted Geranylcyclohexentriol Produced by Phomopsis sp., a Potential Mycoherbicide for Carthamus lanatus Biocontrol
Cimmino, Alessio, Andolfi, Anna, Zonno, Maria C., Troise, Ciro, Santini, Antonello, Tuzi, Angela, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2012. "Phomentrioloxin: A Phytotoxic Pentasubstituted Geranylcyclohexentriol Produced by Phomopsis sp., a Potential Mycoherbicide for Carthamus lanatus Biocontrol." Journal of Natural Products. 75 (6), pp. 1130-1137. https://doi.org/10.1021/np300200j
The science, art and business of successful bioherbicides
Ash, G. J.. 2010. "The science, art and business of successful bioherbicides." Biological Control. 52 (3), pp. 230-240. https://doi.org/10.1016/j.biocontrol.2009.08.007
The characterization and diversity of bacterial endophytes of grapevine
West, E. R., Cother, E. J., Steel, C. C. and Ash, G. J.. 2010. "The characterization and diversity of bacterial endophytes of grapevine." Canadian Journal of Microbiology. 56 (3), pp. 209-216. https://doi.org/10.1139/W10-004
Australia and New Zealand biocontrol conference: Emerging themes, future prospects
Gurr, Geoff M.., Horne, Paul, Page, Jessica, Ash, Gavin J. and Pilkington, Leigh J.. 2010. "Australia and New Zealand biocontrol conference: Emerging themes, future prospects." Biological Control. 52 (3), pp. 195-197. https://doi.org/10.1016/j.biocontrol.2010.01.001
Genotypic analysis of Mucor from the platypus in Australia
Connolly, J. H., Stodart, B. J. and Ash, G. J.. 2010. "Genotypic analysis of Mucor from the platypus in Australia." Journal of Wildlife Diseases. 46 (1), pp. 55-69. https://doi.org/10.7589/0090-3558-46.1.55
Development of strain specific molecular markers for the Sclerotinia minor bioherbicide strain IMI 344141
Pan, L., Ash, G. J., Ahn, B. and Watson, A. K.. 2010. "Development of strain specific molecular markers for the Sclerotinia minor bioherbicide strain IMI 344141." Biocontrol Science and Technology. 20 (9), pp. 939-959. https://doi.org/10.1080/09583157.2010.491895
Evidence that Diaporthe toxica infection of Lupinus albus is an emerging concern for the Australian lupin industry
Cowley, R. B., Ash, G. J., Harper, J. D. I. and Luckett, D. J.. 2010. "Evidence that Diaporthe toxica infection of Lupinus albus is an emerging concern for the Australian lupin industry." Australasian Plant Pathology. 39 (2), pp. 146-153. https://doi.org/10.1071/AP09067
Physiological characterization of the dandelion bioherbicide, Sclerotinia minor IMI 344141
Shaheen, In'aam Y., Abu-Dieyeh, Mohammed H., Ash, Gavin J. and Watson, Alan K.. 2010. "Physiological characterization of the dandelion bioherbicide, Sclerotinia minor IMI 344141." Biocontrol Science and Technology. 20 (1), pp. 57-76. https://doi.org/10.1080/09583150903419520
Influence of cultural and environmental conditions on conidial production, conidial germination and infectivity of Rhynchosporium alismatis, a candidate mycoherbicide
Jahromi, F. G., Ash, G. J. and Cother, E. J.. 1998. "Influence of cultural and environmental conditions on conidial production, conidial germination and infectivity of Rhynchosporium alismatis, a candidate mycoherbicide." Australasian Plant Pathology. 27 (3), pp. 180-185. https://doi.org/10.1071/AP98020
Suppressive effects of Rhynchosporium alismatis on different growth stages of Damasonium minus
Jahromi, F. G., Ash, G. J., Cother, E. J. and SOC ESPANOLA MALHERBOLOGIA. 1997. "Suppressive effects of Rhynchosporium alismatis on different growth stages of Damasonium minus." 1997 Congress of the Sociedad-Espanola-de-Malherbologia. Spain 24 - 26 Nov 1997 Spain.
Phomopsis spp. associated with die-back of saffron thistle (Carthamus lanatus)
Crump, N. S., Ash, G. J. and Nikandrow, A.. 1996. "Phomopsis spp. associated with die-back of saffron thistle (Carthamus lanatus)." Australasian Plant Pathology. 25 (2), p. 143. https://doi.org/10.1071/AP96025
Effect of Post-Inoculation Temperature and Light Intensity on Expression of Resistance to Stripe Rust in Some Australian Wheat Cultivars
Ash, G. J. and Rees, R. G.. 1994. "Effect of Post-Inoculation Temperature and Light Intensity on Expression of Resistance to Stripe Rust in Some Australian Wheat Cultivars." Australian Journal of Agricultural Research. 45 (7), pp. 1379-1386. https://doi.org/10.1071/AR9941379
Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici
Park, Robert F., Ash, Gavin J. and Rees, Robert G.. 1992. "Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici." Mycological Research. 96 (3), pp. 166-170. https://doi.org/10.1016/S0953-7562(09)80961-1
Yield losses in wheat caused by stripe rust (Puccinia striiformis West.) in northern New South Wales
Ash, G J.. and Brown, J. F.. 1990. "Yield losses in wheat caused by stripe rust (Puccinia striiformis West.) in northern New South Wales." Australian Journal of Experimental Agriculture. 30 (1), pp. 103-108. https://doi.org/10.1071/EA9900103