Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment

Article

Singh, Sunil K., Ash, Gavin J. and Hodda, Mike. 2015. "Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment." Biological Invasions. 17 (4), pp. 1069-1086. https://doi.org/10.1007/s10530-014-0776-0
Article Title

Keeping ‘one step ahead’ of invasive species: using an integrated framework to screen and target species for detailed biosecurity risk assessment

ERA Journal ID3212
Article CategoryArticle
AuthorsSingh, Sunil K. (Author), Ash, Gavin J. (Author) and Hodda, Mike (Author)
Journal TitleBiological Invasions
Journal Citation17 (4), pp. 1069-1086
Number of Pages18
Year2015
PublisherSpringer
Place of PublicationNetherlands
ISSN1387-3547
1573-1464
Digital Object Identifier (DOI)https://doi.org/10.1007/s10530-014-0776-0
Web Address (URL)https://link.springer.com/article/10.1007/s10530-014-0776-0
Abstract

Predicting which species will become invasive in each country or region before they arrive is necessary to devise and implement measures for minimising the costs of biological invasions. Metaphorically, this is keeping one step ahead of invasive species. A structured and systematic approach for screening large numbers of species and identifying those likely to become invasive is proposed in this paper. The Pest Screening and Targeting (PeST) framework integrates heterogeneous information and data on species biogeography, biotic and abiotic factors to first determine a preliminary risk index, then uses this index to identify species for a second, more detailed, risk evaluation process to provide a final ranking. Using the PeST framework, 97 species of plant-parasitic nematodes were evaluated for their biosecurity risks to Australia. The species identified as greatest risks included both previously unrecognised and currently-recognised species. The former included Heterodera zeae, Meloidogyne graminicola, M. enterolobii, M. chitwoodi and Scutellonema bradys, while the latter included Bursaphelenchus xylophilus, Ditylenchus destructor, Globodera pallida, Heterodera glycines and H. filipjevi. Of the ten criteria used in the PeST framework, emerging pest status, pathogenicity, host range and species biogeography most strongly influenced overall risk. The PeST framework also identified species where research to fill in critical knowledge gaps will be most beneficial (e.g. Globodera tabacum, Heterodera cajani, H. filipjevi, Meloidogyne ethiopica, Pratylenchus fallax and P. sudanensis). Where data were available, the information and associated metadata gathered for the PeST framework can be used to guide biosecurity decision making; determine species which require pre border certification and target sampling at the borders.

KeywordsPeST framework; Risk prioritization; Screening tool; Plant pathogens; Emerging pests; Plant-parasitic nematodes
ANZSRC Field of Research 2020410202. Biosecurity science and invasive species ecology
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Byline AffiliationsCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australia
Charles Sturt University
Institution of OriginUniversity of Southern Queensland
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Adorada, Dante L., Stodart, Benjamin J., Tpoi, Roni P., Costa, Severino S. and Ash, Gavin J.. 2013. "Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity." Australasian Plant Disease Notes. 8 (1), pp. 43-47. https://doi.org/10.1007/s13314-013-0092-z
Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice
Ash, Gavin J., Lang, Jillian M., Triplett, Lindsay R., Stodart, Benjamin J., Verdier, Valerie, Vera Cruz, Casiana, Rott, Philippe and Leach, Jan E.. 2014. "Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice ." Plant Disease: an international journal of applied plant pathology. 98 (7), pp. 909-915. https://doi.org/10.1094/PDIS-09-13-0957-RE
Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae
Patel, Hitendra Kumar, Matiuzzo, Maura, Bertani, Iris, Bigirimana, Vincent De Paul, Ash, Gavin J., Hofte, Monica and Venturi, Vittoria. 2014. "Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae." BMC Microbiology. 14 (274), pp. 1-13. https://doi.org/10.1186/s12866-014-0274-7
Identification of QTLs associated with resistance to phomopsis pod blight (Diaporthe toxica) in Lupinus albus
Cowley, Raymond, Luckett, David J., Ash, Gavin J., Harper, John D. I., Vipin, Cina A., Raman, Harsh and Ellwood, Simon. 2014. "Identification of QTLs associated with resistance to phomopsis pod blight (Diaporthe toxica) in Lupinus albus." Breeding Science. 64 (1), pp. 83-89. https://doi.org/10.1270/jsbbs.64.83
Prioritising plant-parasitic nematode species biosecurity risks using self organising maps
Singh, Sunil K., Paini, Dean R., Ash, Gavin J. and Hodda, Mike. 2014. "Prioritising plant-parasitic nematode species biosecurity risks using self organising maps." Biological Invasions. 16 (7), pp. 1515-1530. https://doi.org/10.1007/s10530-013-0588-7
Responses of physiological indexes and leaf epicuticular waxes of Brassica napus to Sclerotinia sclerotiorum infection
Ni, Y., Guo, Y. -J., Wang, J., Xia, R. -E., Wang, X. -Q., Ash, G. and Li, J. -N.. 2014. "Responses of physiological indexes and leaf epicuticular waxes of Brassica napus to Sclerotinia sclerotiorum infection." Plant Pathology. 63 (1), pp. 174-184. https://doi.org/10.1111/ppa.12060
The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species
Pattemore, Julie A., Hane, James K., Williams, Angela H., Wilson, Bree A. L., Stodart, Ben J. and Ash, Gavin J.. 2014. "The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species." BMC Genomics. 15 (1), pp. 1-15. https://doi.org/10.1186/1471-2164-15-660
Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment
Adorada, D. L., Stodart, B. J., Pangga, I. B. and Ash, G. J.. 2015. "Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment." Plant Pathology. 64 (1), pp. 43-50. https://doi.org/10.1111/ppa.12243
Hierarchical genetic variation of Botryosphaeriaceae species associated with decline and dieback of grapevine in south-eastern Australia
Qui, Y., Steel, C. C., Ash, G. J. and Savocchia, S.. 2015. "Hierarchical genetic variation of Botryosphaeriaceae species associated with decline and dieback of grapevine in south-eastern Australia." Australian Journal of Grape and Wine Research. 21 (3), pp. 458-467. https://doi.org/10.1111/ajgw.12144
Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus)
Andolfi, Anna, Boari, Angela, Evidente, Marco, Cimmino, Alessio, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2015. "Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus)." Journal of Natural Products. 78 (4), pp. 623-629. https://doi.org/10.1021/np500570h
Structure and Absolute Configuration of Kongiidiazadione, a NewPhytotoxic 3-Substituted-5-Diazenylcyclopentendione Produced by Diaporthe Kongii
Evidente, Marco, Boari, Angela, Vergura, Stefania, Cimmino, Alessio, Vurro, Maurizio, Ash, Gavin, Superchi, Stefano and Evidente, Antonio. 2015. "Structure and Absolute Configuration of Kongiidiazadione, a NewPhytotoxic 3-Substituted-5-Diazenylcyclopentendione Produced by Diaporthe Kongii." Chirality: the pharmacological, biological, and chemical consequences of molecular asymmetry. 27 (9), pp. 557-562. https://doi.org/10.1002/chir.22466
Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)
Wang, Aisuo and Ash, Gavin J.. 2015. "Whole genome phylogeny of Bacillus by feature frequency profiles (FFP)." Scientific Reports. 5, pp. 1-14. https://doi.org/10.1038/srep13644
Biological control of sclerotinia stem rot of canola using antagonistic bacteria
Kamal, M. M., Lindbeck, K. D., Savocchia, S. and Ash, G. J.. 2015. "Biological control of sclerotinia stem rot of canola using antagonistic bacteria ." Plant Pathology. 64 (6), pp. 1375-1384. https://doi.org/10.1111/ppa.12369
Biology and biocontrol of Sclerotinia sclerotiorum (Lib.) de Bary in oilseed Brassicas
Kamal, Mohd. Mostofa, Savocchia, Sandra, Lindbeck, Kurt D. and Ash, Gavin J.. 2016. "Biology and biocontrol of Sclerotinia sclerotiorum (Lib.) de Bary in oilseed Brassicas." Australasian Plant Pathology. 45 (1), pp. 1-14. https://doi.org/10.1007/s13313-015-0391-2
First record of stubby-root nematode (Paratrichodorus porosus) associated with barley in Australia
Sheedy, J. G., Clewett, T. G., Hodda, M. and Thompson, J. P.. 2010. "First record of stubby-root nematode (Paratrichodorus porosus) associated with barley in Australia." Australasian Plant Disease Notes. 5 (1), pp. 66-69. https://doi.org/10.1071/DN10024
Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae
Ash, G. J., Lang, J. M., Triplett, L. R., Stodart, B. J., Verdier, V. and Leach, J. E.. 2013. "Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae." 2013 APS-MSA Joint Meeting. United States 10 - 14 Aug 2013 United States. American Phytopathological Society.
Phomentrioloxin: A Phytotoxic Pentasubstituted Geranylcyclohexentriol Produced by Phomopsis sp., a Potential Mycoherbicide for Carthamus lanatus Biocontrol
Cimmino, Alessio, Andolfi, Anna, Zonno, Maria C., Troise, Ciro, Santini, Antonello, Tuzi, Angela, Vurro, Maurizio, Ash, Gavin and Evidente, Antonio. 2012. "Phomentrioloxin: A Phytotoxic Pentasubstituted Geranylcyclohexentriol Produced by Phomopsis sp., a Potential Mycoherbicide for Carthamus lanatus Biocontrol." Journal of Natural Products. 75 (6), pp. 1130-1137. https://doi.org/10.1021/np300200j
The science, art and business of successful bioherbicides
Ash, G. J.. 2010. "The science, art and business of successful bioherbicides." Biological Control. 52 (3), pp. 230-240. https://doi.org/10.1016/j.biocontrol.2009.08.007
The characterization and diversity of bacterial endophytes of grapevine
West, E. R., Cother, E. J., Steel, C. C. and Ash, G. J.. 2010. "The characterization and diversity of bacterial endophytes of grapevine." Canadian Journal of Microbiology. 56 (3), pp. 209-216. https://doi.org/10.1139/W10-004
Australia and New Zealand biocontrol conference: Emerging themes, future prospects
Gurr, Geoff M.., Horne, Paul, Page, Jessica, Ash, Gavin J. and Pilkington, Leigh J.. 2010. "Australia and New Zealand biocontrol conference: Emerging themes, future prospects." Biological Control. 52 (3), pp. 195-197. https://doi.org/10.1016/j.biocontrol.2010.01.001
Genotypic analysis of Mucor from the platypus in Australia
Connolly, J. H., Stodart, B. J. and Ash, G. J.. 2010. "Genotypic analysis of Mucor from the platypus in Australia." Journal of Wildlife Diseases. 46 (1), pp. 55-69. https://doi.org/10.7589/0090-3558-46.1.55
Development of strain specific molecular markers for the Sclerotinia minor bioherbicide strain IMI 344141
Pan, L., Ash, G. J., Ahn, B. and Watson, A. K.. 2010. "Development of strain specific molecular markers for the Sclerotinia minor bioherbicide strain IMI 344141." Biocontrol Science and Technology. 20 (9), pp. 939-959. https://doi.org/10.1080/09583157.2010.491895
Evidence that Diaporthe toxica infection of Lupinus albus is an emerging concern for the Australian lupin industry
Cowley, R. B., Ash, G. J., Harper, J. D. I. and Luckett, D. J.. 2010. "Evidence that Diaporthe toxica infection of Lupinus albus is an emerging concern for the Australian lupin industry." Australasian Plant Pathology. 39 (2), pp. 146-153. https://doi.org/10.1071/AP09067
Physiological characterization of the dandelion bioherbicide, Sclerotinia minor IMI 344141
Shaheen, In'aam Y., Abu-Dieyeh, Mohammed H., Ash, Gavin J. and Watson, Alan K.. 2010. "Physiological characterization of the dandelion bioherbicide, Sclerotinia minor IMI 344141." Biocontrol Science and Technology. 20 (1), pp. 57-76. https://doi.org/10.1080/09583150903419520
Influence of cultural and environmental conditions on conidial production, conidial germination and infectivity of Rhynchosporium alismatis, a candidate mycoherbicide
Jahromi, F. G., Ash, G. J. and Cother, E. J.. 1998. "Influence of cultural and environmental conditions on conidial production, conidial germination and infectivity of Rhynchosporium alismatis, a candidate mycoherbicide." Australasian Plant Pathology. 27 (3), pp. 180-185. https://doi.org/10.1071/AP98020
Suppressive effects of Rhynchosporium alismatis on different growth stages of Damasonium minus
Jahromi, F. G., Ash, G. J., Cother, E. J. and SOC ESPANOLA MALHERBOLOGIA. 1997. "Suppressive effects of Rhynchosporium alismatis on different growth stages of Damasonium minus." 1997 Congress of the Sociedad-Espanola-de-Malherbologia. Spain 24 - 26 Nov 1997 Spain.
Phomopsis spp. associated with die-back of saffron thistle (Carthamus lanatus)
Crump, N. S., Ash, G. J. and Nikandrow, A.. 1996. "Phomopsis spp. associated with die-back of saffron thistle (Carthamus lanatus)." Australasian Plant Pathology. 25 (2), p. 143. https://doi.org/10.1071/AP96025
Effect of Post-Inoculation Temperature and Light Intensity on Expression of Resistance to Stripe Rust in Some Australian Wheat Cultivars
Ash, G. J. and Rees, R. G.. 1994. "Effect of Post-Inoculation Temperature and Light Intensity on Expression of Resistance to Stripe Rust in Some Australian Wheat Cultivars." Australian Journal of Agricultural Research. 45 (7), pp. 1379-1386. https://doi.org/10.1071/AR9941379
Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici
Park, Robert F., Ash, Gavin J. and Rees, Robert G.. 1992. "Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici." Mycological Research. 96 (3), pp. 166-170. https://doi.org/10.1016/S0953-7562(09)80961-1
Yield losses in wheat caused by stripe rust (Puccinia striiformis West.) in northern New South Wales
Ash, G J.. and Brown, J. F.. 1990. "Yield losses in wheat caused by stripe rust (Puccinia striiformis West.) in northern New South Wales." Australian Journal of Experimental Agriculture. 30 (1), pp. 103-108. https://doi.org/10.1071/EA9900103