Stagonosporopsis spp. associated with ray blight disease of Asteraceae

Article

Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W. J.. 2012. "Stagonosporopsis spp. associated with ray blight disease of Asteraceae." Australasian Plant Pathology. 41 (6), pp. 675-686. https://doi.org/10.1007/s13313-012-0161-3
Article Title

Stagonosporopsis spp. associated with ray blight disease
of Asteraceae

ERA Journal ID2559
Article CategoryArticle
AuthorsVaghefi, N. (Author), Pethybridge, S. J. (Author), Ford, R. (Author), Nicolas, M. E. (Author), Crous, P. W. (Author) and Taylor, P. W. J. (Author)
Journal TitleAustralasian Plant Pathology
Journal Citation41 (6), pp. 675-686
Number of Pages12
Year2012
PublisherSpringer
Place of PublicationNetherlands
ISSN0815-3191
1448-6032
Digital Object Identifier (DOI)https://doi.org/10.1007/s13313-012-0161-3
Web Address (URL)https://link.springer.com/article/10.1007%2Fs13313-012-0161-3
Abstract

Ray blight disease of pyrethrum (Tanacetum cinerariifolium) is shown to be caused by more than one species of Stagonosporopsis. The Australian pathogen, previously identified as Phoma ligulicola var. inoxydabilis, represents a new species described as Stagonosporopsis tanaceti based on morphological characters and a five-gene phylogeny employing partial sequences of the actin, translation elongation factor 1-alpha, internal transcribed spacers and 5.8S of the nrDNA, 28S large subunit and beta-tubulin 2 gene sequences. Furthermore, the two varieties of Stagonosporopsis ligulicola are elevated to species level as S. chrysanthemi and S. inoxydabilis based on their DNA phylogeny and morphology.

KeywordsPhoma ligulicola var. inoxydabilis; Ray blight; Stagonosporopsis; Asteraceae; Didymella ligulicola; Tanacetum; Tanacetum cinerariifolium
ANZSRC Field of Research 2020310805. Plant pathology
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Byline AffiliationsUniversity of Melbourne
Agricultural Services, Tasmania
Westerdijk Fungal Biodiversity Institute, Netherlands
Institution of OriginUniversity of Southern Queensland
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Kiss, Levente, Vaghefi, Niloofar, Bransgrove, Kaylene, Dearnaley, John D. W., Takamatsu, Susumu, Tan, Yu Pei, Marston, Craig, Liu, Shu-Yan, Jin, Dan-Ni, Adorada, Dante L., Bailey, Jordan, Cabrera de Alvarez, Maria Graciela, Daly, Andrew, Dirchwolf, Pamela Maia, Jones, Lynne, Nguyen, Thuan Dat, Edwards, Jacqueline, Ho, Wellcome, Kelly, Lisa, ..., Braun, Uwe. 2020. "Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales." Frontiers in Microbiology. 11, pp. 1-31. https://doi.org/10.3389/fmicb.2020.01571
Fungal Planet description sheets: 1112–1181
Crous, P. W., Cowan, D. A., Maggs-Kolling, G., Yilmaz, N., Larsson, E., Angelini, C., Brandrud, T. E., Dearnaley, J. D. W., Dima, B., Dovana, F., Fechner, N., Garcia, D., Gene, J., Halling, R. E., Houbraken, J., Leonard, P., Luangsa-ard, J. J., Noisripoom, W., Rea-Ireland, A. E., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1112–1181." Persoonia. 45, pp. 251-409. https://doi.org/10.3767/persoonia.2020.45.10
Whole-Genome Data from Curtobacterium flaccumfaciens pv. flaccumfaciens Strains Associated with Tan Spot of Mungbean and Soybean Reveal Diverse Plasmid Profiles
Vaghefi, Niloofar, Adorada, Dante L., Huth, Lauren, Kelly, Lisa A., Poudel, Barsha, Young, Anthony and Sparks, Adam H.. 2021. "Whole-Genome Data from Curtobacterium flaccumfaciens pv. flaccumfaciens Strains Associated with Tan Spot of Mungbean and Soybean Reveal Diverse Plasmid Profiles." Molecular Plant-Microbe Interactions. 34 (10), pp. 1216-1222. https://doi.org/10.1094/MPMI-05-21-0116-A
First report of powdery mildew of rainforest spinach (Elatostema reticulatum), native to Australia, caused by Podosphaera xanthii
Kiss Levente and Vaghefi, Niloofar. 2021. "First report of powdery mildew of rainforest spinach (Elatostema reticulatum), native to Australia, caused by Podosphaera xanthii ." Australasian Plant Disease Notes. 16 (1). https://doi.org/10.1007/s13314-021-00424-0
Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean
Vaghefi, Niloofar, Adorada, Dante, Adorada, Encarnacion, Kelly, Lisa, Young, Anthony and Sparks, Adam. 2019. "Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean." 2019 Australian Summer Grains Conference: Enduring Farm Profitability (ASCG 2019). Gold Coast, Australia 08 - 10 Jul 2019
What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?
Vaghefi, N., Adorada, D., Adorada, E., Kelly, L., Young, A. and Sparks, A.. 2019. "What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?" 22nd Biennial Australasian Plant Pathology Society Conference (APPS 2019): Strong Foundations, Future Innovations. Melbourne, Australia 25 - 28 Nov 2019
Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum
Purushotham, Neeraj, Jones, Ashley, Poudel, Barsha, Nasim, Jamila, Adorada, Dante, Sparks, Adam, Schwessinger, Benjamin and Vaghefi, Niloofar. 2020. "Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum." Molecular Plant-Microbe Interactions. 33 (5), pp. 724-726. https://doi.org/10.1094/MPMI-12-19-0356-A
Fungal Planet description sheets: 1042-1111
Crous, P. W., Wingfield, M. J., Chooi, Y.-H., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano-Lira, J. F., Valenzuela-Lopez, N., Hubka, V., Shivas, R. G., Stchigel, A. M., Holdom, D. G., Jurjevic, Z., Kachalkin, A. V., Lebel, T., Lock, C., Martin, M. P., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1042-1111." Persoonia. 44, pp. 301-459. https://doi.org/10.3767/persoonia.2020.44.11
Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters
Jeffress, Sarah, Arun-Chinnappa, Kiruba, Stodart, Ben, Vaghefi, Niloofar, Tan, Yu Pei and Ash, Gavin. 2020. "Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters." PLoS One. 15 (5). https://doi.org/10.1371/journal.pone.0227396
A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)
Kusch, Stefan, Nemeth, Mark Z., Vaghefi, Niloofar, Ibrahim, Heba M.M., Panstruga, Ralph and Kiss, Levente. 2020. "A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)." Molecular Plant-Microbe Interactions. 33 (6), pp. 782-786. https://doi.org/10.1094/MPMI-02-20-0029-A
Re-visiting management options for charcoal rot in sorghum (updated)
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2019. "Re-visiting management options for charcoal rot in sorghum (updated)." GRDC Communities.
Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia
Vaghefi, Niloofar, Thompson, Susan M., Kimber, Rohan B.E., Thomas, Geoff J., Kant, Pragya, Barbetti, Martin J. and van Leur, Joop A.G.. 2020. "Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia." Mycological Progress: international journal of fungal sciences. 19, pp. 381-396. https://doi.org/10.1007/s11557-020-01566-8
Fungal planet description sheets: 951–1041
Crous, P. W., Wingfield, M. J., Lombard, L., Roets, F., Swart, W. J., Alvarado, P., Carnegie, A. J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A. V., Baseia, I. G., Bellanger, J. -M., Bessette, A. E., Bessette, A. R., De la Pena-Lastra, S., Garcia, D., Gene, J., Pham, T. H. G., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 951–1041." Persoonia. 43, pp. 223-425. https://doi.org/10.3767/persoonia.2019.43.06
Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers
Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, Anke. 2019. "Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers." Plant Pathology. 68 (7), pp. 1331-1336. https://doi.org/10.1111/ppa.13035
Genera of phytopathogenic fungi: GOPHY 3
Marin-Felix, Y., Hernandez-Restrepo, M., Iturrieta-Gonzalez, I., Garcia, D., Gene, J., Groenewald, J. Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R. K., Taylor, P. W. J., Ambers, C., Bonthond, G., Edwards, J., Krueger-Hadfield, S. A., Luangsa-ard, J. J., Morton, L., Moslemi, A., Sandoval-Denis, M., ..., Crous, P. W.. 2019. "Genera of phytopathogenic fungi: GOPHY 3." Studies in Mycology. 94, pp. 1-124. https://doi.org/10.1016/j.simyco.2019.05.001
Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin
Knight, Noel L., Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Secor, Gary A., Rivera, Viviana V., Hanson, Linda E., Nelson, Scot C. and Pethybridge, Sarah J.. 2019. "Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin." Phytopathology: International Journal of the American Phytopathological Society. 109 (7), pp. 1280-1292. https://doi.org/10.1094/PHYTO-07-18-0264-R
Fungal planet description sheets: 868–950
Crous, P. W., Carnegie, A. J., Wingfield, M. J., Sharma, R., Mughini, G., Noordeloos, M. E., Santini, A., Shouche, Y. S., Bezerra, J. D. P., Dima, B., Guarnaccia, V., Imrefi, I., Jurjevic, Z., Knapp, D. G., Kovacs, G. M., Magista, D., Perrone, G., Rama, T., Rebriev, Y. A., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 868–950." Persoonia. 42, pp. 291-473. https://doi.org/10.3767/persoonia.2019.42.11
Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris
Vaghefi, Niloofar, Silva, Alex, Koenick, Lori B. and Pethybridge, Sarah J.. 2019. "Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris." Molecular Plant-Microbe Interactions. 32 (7), pp. 787-789. https://doi.org/10.1094/MPMI-12-18-0334-A
Re-evaluation of Mycoleptodiscus species and morphologically similar fungi
Hernandez-Restrepo, M., Bezerra, J. D. P., Tan, Y. P., Wiederhold, N., Crous, P. W., Guarro, J. and Gené, J.. 2019. "Re-evaluation of Mycoleptodiscus species and morphologically similar fungi." Persoonia. 42, pp. 205-227. https://doi.org/10.3767/persoonia.2019.42.08
Ray blight of pyrethrum in Australia: a review of the current status and future opportunities
Bhuiyan, M. A. H. B., Vaghefi, N. and Taylor, P. W. J.. 2019. "Ray blight of pyrethrum in Australia: a review of the current status and future opportunities." Plant Pathology. 68 (4), pp. 620-627. https://doi.org/10.1111/ppa.13000
An international perspective on genetic structure and gene flow in Cercospora beticola populations
Knight, N. L., Vaghefi, N., Kikkert, J., Bolton, M. D., Secor, G. A., Hanson, L., Nelson, S. C. and Pethybridge, S. J.. 2018. "An international perspective on genetic structure and gene flow in Cercospora beticola populations." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States. American Phytopathological Society.
Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA
Koenick, L., Knight, N. L., Vaghefi, N., du Toit, L. and Pethybridge, S. J.. 2018. "Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States.
A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys
Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium. Adelaide, Australia 04 - 08 Sep 2018 Australia.
Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Development of microsatellite markers for quantifying genetic diversity of Pleospora betae
Koenick, Lori, Vaghefi, Niloofar, Knight, Noel L., du Toit, Lindsey and Pethybridge, Sarah J.. 2017. "Development of microsatellite markers for quantifying genetic diversity of Pleospora betae." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2018. "Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields." Plant Disease: an international journal of applied plant pathology. 102 (11), pp. 2074-2082. https://doi.org/10.1094/PDIS-01-18-0175-RE
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata
Wingfield, Brenda D., Bills, Gerald F., Dong, Yang, Huang, Wenli, Nel, Wilma J., Swalarsk-Parry, Benedicta S., Vaghefi, Niloofar, Wilken, Markus P., An, Zhiqiang, de Beer, Z. Wilhelm, De Vos, Lieschen, Chen, Li, Duong, Tuan A., Gao, Yun, Hammerbacher, Almuth, Kikkert, Julie R., Li, Yan, Li, Huiying, Li, Kuan, ..., Zhang, Xiaoling. 2018. "Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata." IMA Fungus: the global mycological journal. 9 (1), pp. 199-223. https://doi.org/10.5598/imafungus.2018.09.01.13
Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]
Adorada, Dante, Kelly, Lisa, Vaghefi, Niloofar and Sparks, Adam H,. 2018. "Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]." GRDC Field Crop Diseases Community of Practice. 1 October 2018, pp. 1-8.
Multi-locus phylogeny and taxonomy of Exserohilum
Hernandez-Restrepo, M., Madrid, H., Tan, Y. P., da Cunha, K. C., Gené, J., Guarro, J. and Crous, P. W.. 2018. "Multi-locus phylogeny and taxonomy of Exserohilum." Persoonia. 41, pp. 71-108. https://doi.org/10.3767/persoonia.2018.41.05
Fungal planet description sheets: 716-784
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Gene, J., Guarro, J., Baseia, I. G., Garcia, D., Gusmao, L. F. P., Souza-Motta, C. M., Thangavel, R., Adamcik, S., Barili, A., Barnes, C. W., Bezerra, J. D. P., Bordallo, J. J., Cano-Lira, J. F., de Oliveira, R. J. V., Ercole, E., ..., Groenewald, J. Z.. 2018. "Fungal planet description sheets: 716-784." Persoonia. 40, pp. 240-393. https://doi.org/10.3767/persoonia.2018.40.10
First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA
Hay, F., Vaghefi, N., Strickland, D., Hadad, R. and Pethybridge, S.. 2018. "First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA." New Disease Reports. 38 (1), pp. 1-1. https://doi.org/10.5197/j.2044-0588.2018.038.001
Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium
Tan, Yu Pei, Crous, Pedro W. and Shivas, Roger G.. 2018. "Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium." MycoKeys. 35, pp. 1-25. https://doi.org/10.3897/mycokeys.35.25665
Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2018. "Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]." eXtension AUS Field Crop Diseases. 19 March 2018, pp. 1-8.
Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris
Vaghefi, Niloofar, Kikkert, Julie R., Hay, Frank S., Carver, Gavriela D., Koenick, Lori B., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2018. "Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris." Fungal Biology. 122 (4), pp. 264-282. https://doi.org/10.1016/j.funbio.2018.01.008
Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe
Guarnaccia, V., Groenewald, J. Z., Woodhall, J., Armengol, J., Cinelli, T., Eichmeier, A., Ezra, D., Fontaine, F., Gramaje, D., Gutierrez-Aguirregabiria, A., Kaliterna, J., Kiss, L., Larignon, P., Luque, J., Mugnai, L., Naor, V., Raposo, R., Sandor, E., Vaczy, K. Z. and Crous, P. W.. 2018. "Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe." Persoonia. 40, pp. 135-153. https://doi.org/10.3767/persoonia.2018.40.06
First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note
Hay, F. S., Vaghefi, N., Ivy, A. and Pethybridge, S. J.. 2017. "First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note." Plant Disease: an international journal of applied plant pathology. 101 (1), pp. 248-248. https://doi.org/10.1094/PDIS-05-16-0656-PDN
First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York
Hay, F. S., Maloney, E., Vaghefi, N., Shivas, R. G and Pethybridge, S. J. 2017. "First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York." Plant Disease: an international journal of applied plant pathology. 101 (11), pp. 1953-1953. https://doi.org/10.1094/PDIS-05-17-0648-PDN
Notes for genera: Ascomycota
Wijayawardene, Nalin N., Hyde, Kevin D., Rajeshkumar, Kunhiraman C., Hawksworth, David L., Madrid, Hugo, Kirk, Paul M., Braun, Uwe, Singh, Rajshree V., Crous, Pedro W., Kukwa, Martin, Lucking, Robert, Kurtzman, Cletus P., Yurkov, Andrey, Haelewaters, Danny, Aptroot, Andre, Lumbsch, H. Thorsten, Timdal, Einar, Ertz, Damien, Etayo, Javier, ..., Karunarathna, Samantha C.. 2017. "Notes for genera: Ascomycota." Fungal Diversity. 86 (1), pp. 1-594. https://doi.org/10.1007/s13225-017-0386-0
Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015
Pethybridge, S. J., Vaghefi, N. and Kikkert, J.. 2016. "Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015." Plant Disease Management Reports. 3 (Report No. 10), pp. 1-1.
Genera of phytopathogenic fungi: GOPHY 1
Marin-Felix, Y., Groenewald, J. Z., Cai, L., Chen, Q., Marincowitz, S., Barnes, I., Bensch, K., Braun, U., Camporesi, E., Damm, U., de Beer, Z. W., Dissanayake, A., Edwards, J., Giraldo, A., Hernandez-Restrepo, M., Hyde, K. D., Jayawardena, R. S., Lombard, L., Luangsa-ard, J., ..., Crous, P. W.. 2017. "Genera of phytopathogenic fungi: GOPHY 1." Studies in Mycology. 86 (86), pp. 99-216. https://doi.org/10.1016/j.simyco.2017.04.002
Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York." Horttechnology. 27 (4), pp. 530-538.
Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata
Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., ..., Wingfield, Michael J.. 2015. "Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata." IMA Fungus: the global mycological journal. 6 (1), pp. 233-248. https://doi.org/10.5598/imafungus.2015.06.01.15
Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields
Vaghefi, Niloofar, Hay, Frank S., Ades, Peter K., Pethybridge, Sarah Jane, Ford, Rebecca and Taylor, Paul W. J.. 2015. "Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields." Phytopathology: International Journal of the American Phytopathological Society. 105 (3), pp. 358-369. https://doi.org/10.1094/PHYTO-08-14-0212-R
Johnalcornia gen. et. comb. nov., and nine new combinations in Curvularia based on molecular phylogenetic analysis
Tan, Yu Pei, Madrid, Hugo, Crous, Pedro W. and Shivas, Roger G.. 2014. "Johnalcornia gen. et. comb. nov., and nine new combinations in Curvularia based on molecular phylogenetic analysis." Australasian Plant Pathology. 43 (6), pp. 589-603. https://doi.org/10.1007/s13313-014-0315-6
The Amsterdam Declaration on Fungal Nomenclature
Hawksworth, David L., Crous, Pedro W., Redhead, Scott A., Reynolds, Don R., Samson, Robert A., Seifert, Keith A., Taylor, John W., Wingfield, Michael J., Abaci, Ozlem, Aime, Catherine, Asan, Ahmet, Bai, Feng-Yan, de Beer, Z. Wilhelm, Begerow, Dominik, Berikten, Derya, Boekhout, Teun, Buchanan, Peter K., Burgess, Treena, Buzina, Walter, ..., Zhang, Ning. 2011. "The Amsterdam Declaration on Fungal Nomenclature." IMA Fungus: the global mycological journal. 2 (1), pp. 105-112. https://doi.org/10.5598/imafungus.2011.02.01.14
Fungal planet description sheets: 69-91
Crous, P. W., Groenewald, J. Z., Shivas, R. G., Edwards, J., Seifert, K. A., Alfenas, A. C., Alfenas, R. F., Burgess, T. I., Carnegie, A. J., Hardy, G. E. St J., Quaedvlieg, W., Young, A. J., McTaggart, A. R., Pascoe, I. G., Porter, I. J., Louis-Seize, G., Pereira, O. L., Hüberli, D., Jung, T., ..., White, G. P.. 2011. "Fungal planet description sheets: 69-91." Persoonia. 26, pp. 108-156. https://doi.org/10.3767/003158511X581723
Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black spot
Glienke, C., Pereira, O. L., Stringari, D., Fabris, J., Kava-Cordeiro, V., Galli-Terasawa, L., Cunnington, J., Shivas, R. G., Groenewald, J. Z. and Crous, P. W.. 2011. "Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black spot." Persoonia. 26, pp. 47-56. https://doi.org/10.3767/003158511X569169
Fungal planet description sheets: 107-127
Crous, P. W., Summerell, B. A., Shivas, R. G., Burgess, T. I., Lombard, L., Groenewald, J. Z., Liew, E. C Y, McTaggart, A. R., Hardy, G. E S J, Huberli, D., De cock, C. A., Dreyer, L. L., Granke, L. L., Hausbeck, M. K., Guest, D. I., Shuttleworth, L. A., Jung, T., Koukol, O., Lennox, C. L., ..., Windstam, S. T.. 2012. "Fungal planet description sheets: 107-127." Persoonia. 28, pp. 138-182. https://doi.org/10.3767/003158512X652633
Fungal planet description sheets: 320–370
Crous, P. W., Wingfield, M. J., Guarro, J., Hernandez-Restrep, M., Sutton, D. A., Acharya, K., Barber, P. A., Boekhout, T., Dimitrov, R. A., Duenas, M., Dutta, A. K., Gene, J., Gouliamova, D. E., Groenewald, M., Lombard, L., Morozova, O. V., Sarkar, J., Smith, M. Th., Stchigel, A. M., ..., Groenewald, J. Z.. 2015. "Fungal planet description sheets: 320–370." Persoonia. 34, pp. 167-266. https://doi.org/10.3767/003158515X688433
A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex
Manamgoda, Dimuthu S., Cai, Lei, McKenzie, Eric H. C., Crous, Pedro W., Madrid, Hugo, Chukeatirote, Ekachai, Shivas, Roger G., Tan, Yu Pei and Hyde, Kevin D.. 2012. "A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex." Fungal Diversity. 56 (1), pp. 131-144. https://doi.org/10.1007/s13225-012-0189-2
Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP)
Tan, Yu Pei, Shivas, Roger G. and Crous, Pedro W.. 2016. "Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP)." Mycological Progress: international journal of fungal sciences. 15 (10-11), pp. 1203-1214. https://doi.org/10.1007/s11557-016-1240-6
Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A., Nelson, Scot C. and Pethybridge, Sarah J.. 2017. "Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing." PLoS One. 12 (10). https://doi.org/10.1371/journal.pone.0186488
Abscisic acid activates pathogenesis-related defense gene signaling in lentils
Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270
Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii
Vaghefi, Niloofar, Nelson, Scot C., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii." Scientific Reports. 7. https://doi.org/10.1038/s41598-017-01929-4
De novo genome assembly of Cercospora beticola for microsatellite marker development and validation
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2017. "De novo genome assembly of Cercospora beticola for microsatellite marker development and validation." Fungal Ecology. 26, pp. 125-134. https://doi.org/10.1016/j.funeco.2017.01.006
Management of cercospora leaf spot in conventional and organic table beet production
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Management of cercospora leaf spot in conventional and organic table beet production." Plant Disease: an international journal of applied plant pathology. 101 (9), pp. 1642-1651. https://doi.org/10.1094/PDIS-04-17-0528-RE
Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management
Vaghefi, N., Kikkert, J. and Pethybridge, S.. 2016. "Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management." 76th Annual Meeting of the Northeastern Division: The American Phytopathological Society. Ithaca, United States 19 - 21 Oct 2016 United States. American Phytopathological Society. https://doi.org/10.1094/PHYTO-107-2-S2.5
Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia
Vaghefi, N., Hay, F. S., Ades, P. K., Pethybridge, S. J., Ford, R. and Taylor, P. W. J.. 2014. "Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia." 10th International Mycological Congress (IMC10 2014). Bangkok, Thailand 03 - 08 Aug 2014
Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W.. 2012. "Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia." 2012 American Phytopathological Society Annual Meeting (APS 2012). Rhode Island, United States of America 04 - 08 Aug 2012 United States. American Phytopathological Society.
Incidence and pathogenicity of Didymella americana on table beet in new york
Vaghefi, Niloofar, Kikkert, Julie R. and Pethybridge, Sarah J.. 2016. "Incidence and pathogenicity of Didymella americana on table beet in new york." Plant Health Progress. 17, pp. 270-272. https://doi.org/10.1094/PHP-BR-16-0064
A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis
Vaghefi, Niloofar, Mustafa, Barkat M., Dulal, Nabeen, Selby-Pham, Jamie, Taylor, Paul W. J. and Ford, Rebecca. 2013. "A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis." Phytopathologia Mediterranea. 52 (1), pp. 192-201.
A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov.
Barimani, M., Pethybridge, S. J., Vaghefi, N., Hay, F. S. and Taylor, P. W. J.. 2013. "A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov." Plant Pathology. 62 (6), pp. 1248-1257. https://doi.org/10.1111/ppa.12054
Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields
Vaghefi, Niloofar, Ades, Peter K., Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2015. "Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields." Fungal Biology. 119 (5), pp. 408-419. https://doi.org/10.1016/j.funbio.2014.04.004
Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight
Vaghefi, Niloofar, Pethybridge, Sarah J., Hay, Frank S., Ford, Rebecca, Nicolas, Marc E. and Taylor, Paul W. J.. 2016. "Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight." Australasian Plant Pathology. 45 (6), pp. 561-570. https://doi.org/10.1007/s13313-016-0446-z
Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae
Vaghefi, Niloofar, Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2016. "Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae." European Journal of Plant Pathology. 146 (3), pp. 581-595. https://doi.org/10.1007/s10658-016-0944-4
Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York
Vaghefi, Niloofar, Hay, Frank S., Kikkert, Julie and Pethybridge, Sarah J.. 2016. "Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York." Plant Disease: an international journal of applied plant pathology. 100 (7), pp. 1466-1473. https://doi.org/10.1094/PDIS-09-15-1014-RE
One stop shop: backbone trees for important phytopathogenic genera: I (2014)
Hyde, Kevin D., Nilsson, R. Henrik, Alias, S. Aisyah, Ariyawansa, Hiran A., Blair, Jaime E., Cai, Lei, de Cock, Arthur W. A. M., Dissanayake, Asha J., Glockling, Sally L., Goonasekara, Ishani D., Gorczak, Michal, Hahn, Matthias, Jayawardena, Ruvishika S., van Kan, Jan A. L., Lawrence, Matthew H., Levesque, C. Andre, Li, Xinghong, Liu, Jian-Kui, Maharachchikumbura, Sajeewa S. N., ..., Zhou, Nan. 2014. "One stop shop: backbone trees for important phytopathogenic genera: I (2014)." Fungal Diversity. 67 (1), pp. 21-125. https://doi.org/10.1007/s13225-014-0298-1
Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers
O'Malley, Thomas B., Hay, Frank S., Scott, Jason B., Gent, David H., Shivas, Roger G. and Pethybridge, Sarah J.. 2015. "Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers." Canadian Journal of Plant Pathology. 37 (2), pp. 179-187. https://doi.org/10.1080/07060661.2015.1036122
The Colletotrichum boninense species complex
Damm, U., Cannon, P. F., Woudenberg, J. H C., Johnston, P. R., Weir, B. S., Tan, Y. P., Shivas, R. G. and Crous, P. W.. 2012. "The Colletotrichum boninense species complex." Studies in Mycology. 73 (73), pp. 1-36. https://doi.org/10.3114/sim0002
Fungal planet description sheets: 128-153
Crous, P. W., Shivas, R. G., Wingfield, M. J., Summerell, B. A., Rossman, A. Y., Alves, J. L., Adams, G. C., Barreto, R. W., Bell, A., Coutinho, M. L., Lombard, L., Quaedvlieg, W., Videira, S. I R, Groenewald, J. Z., Tan, Y. P., Mahoney, D. P., Macedo, F., Flory, S. L., Gates, G., ..., Walker, D. M.. 2012. "Fungal planet description sheets: 128-153." Persoonia. 29, pp. 146-201. https://doi.org/10.3767/003158512X661589
Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names
Wijayawardene, Nalin N., Crous, Pedro W., Kirk, Paul M., Hawksworth, David L., Boonmee, Saranyaphat, Braun, Uwe, Dai, Dong Qin, D'souza, Melvina J., Diederich, Paul, Dissanayake, Asha, Phookamsak, Rungtiwa, Hyde, Kevin D., Doilom, Mingkhuan, Hongsanan, Singang, Jayawardena, Ruvishika, Liu, Jian-Kui, Manamgoda, Dimuthu S., Thambugala, Kasun M., Wanasinghe, Dhanushka N., ..., Jaklitsch, Walter M.. 2014. "Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names." Fungal Diversity. 69 (1), pp. 1-55. https://doi.org/10.1007/s13225-014-0309-2
Fungal planet description sheets: 92-106
Crous, P. W., Verkley, G. J M, Groenewald, J. Z., Summerell, B. A., Shivas, R. G., Romberg, M. and Mel'nik, V. A.. 2011. "Fungal planet description sheets: 92-106." Persoonia. 27, pp. 130-162. https://doi.org/10.3767/003158511X617561
A re-appraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov
Crous, P. W., Summerell, B. A., Shivas, R. G., Carnegie, A. J. and Groenewald, J. Z.. 2012. "A re-appraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov." Persoonia. 28, pp. 49-65. https://doi.org/10.3767/003158512X639791
Fungal planet description sheets: 214-280
Crous, P. W., Shivas, R. G., Quaedvlieg, W., Lombard, L., Groenewald, J. Z., van der Bank, M., Zhang, Y., Summerell, B. A., Guarro, J., Wingfield, M. J., Tan, Y. P., Cano-Lira, J. F., García, D., Marin-Felix, Y., Alvarado, P., Gené, J., Hernández-Restrepo, M., Marin-Felix, Y., Stchigel, A. M., ..., Wong, P. T. W.. 2014. "Fungal planet description sheets: 214-280." Persoonia. 32, pp. 184-306. https://doi.org/10.3767/003158514X682395
Fungal planet description sheets: 371–399
Crous, P. W., Wingfield, M. J., Le Roux, J. J., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G., Sharma, R., Sonawane, M. S., Tan, Y. P., Altes, A., Barasubiye, T., Barnes, C. W., Blanchette, R. A., Boertmann, D., Bogo, A., Carlavilla, J. R., ..., Groenewald, J. Z.. 2015. "Fungal planet description sheets: 371–399." Persoonia. 35, pp. 264-327. https://doi.org/10.3767/003158515X690269
Fungal planet description sheets: 469-557
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Crane, C., Barrett, S., Cano-Lira, J. F., Le Roux, J. J., Thangavel, R., Guarro, J., Stchigel, A. M., Martin, M. P., Alfredo, D. S., Barber, P. A., Barreto, R. W., Baseia, I. G., Cano-Canals, J., Cheewangkoon, R., Ferreira, R. J., ..., Groenewald, J. Z.. 2016. "Fungal planet description sheets: 469-557." Persoonia. 37, pp. 218-403. https://doi.org/10.3767/003158516X694499
Phylogeny and taxonomy of the genus Cylindrocladiella
Lombard, L., Shivas, R. G., To-Anun, C. and Crous, P. W.. 2012. "Phylogeny and taxonomy of the genus Cylindrocladiella." Mycological Progress: international journal of fungal sciences. 11 (4), pp. 835-868. https://doi.org/10.1007/s11557-011-0799-1
First report of Didymella americana on baby lima bean (Phaseolus lunatus)
Gorny, Adrienne M., Pethybridge, Sarah J., Kikkert, Julie R. and Shivas, Roger G.. 2016. "First report of Didymella americana on baby lima bean (Phaseolus lunatus)." Canadian Journal of Plant Pathology. 38 (3), pp. 389-394. https://doi.org/10.1080/07060661.2016.1195877
Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii
Vaghefi, Niloofar, Pethybridge, Sarah J., Shivas, Roger G. and Nelson, Scot C.. 2016. "Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii." Australasian Plant Disease Notes. 11 (1), pp. 35-37. https://doi.org/10.1007/s13314-016-0223-4
Improving rice zinc biofortification success rates through genetic and crop management approaches in a changing environment
Nakanalage, Niluka, Nicolas, Marc, Norton, Robert, Hirotsu, Naoki, Milham, Paul J. and Seneweera, Saman. 2016. "Improving rice zinc biofortification success rates through genetic and crop management approaches in a changing environment." Frontiers in Plant Science. 7, pp. 1-13. https://doi.org/10.3389/fpls.2016.00764
Fungal Planet description sheets: 281-319
Crous, P., Wingfield, M., Schumacher, R., Summerell, B., Giraldo, A., Gene, J., Guarro, J., Wanasinghe, D., Hyde, K., Camporesi, E., Jones, E., Thambugala, K., Malysheva, E., Malysheva, V., Acharya, K., Alvarez, J., Alvarado, P., Assefa, A., Barnes, C. W., ..., Groenewald, J.. 2014. "Fungal Planet description sheets: 281-319." Persoonia. 33, pp. 212-292. https://doi.org/10.3767/003158514X685680
Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations
Tausz, Michael, Tausz-Posch, Sabine, Norton, Robert M., Fitzgerald, Glenn J., Nicolas, Marc E. and Seneweera, Saman. 2013. "Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations ." Environmental and Experimental Botany. 88, pp. 71-80. https://doi.org/10.1016/j.envexpbot.2011.12.005
Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Nicolas, Marc E. and Seneweera, Saman. 2014. "Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments." Journal of Cereal Science. 59 (2), pp. 137-144. https://doi.org/10.1016/j.jcs.2013.12.002
A case for re-inventory of Australia's plant pathogens
Hyde, K. D., Chomnunti, P., Crous, P. W., Groenewald, J. Z., Damm, U., Ko, T. W. Ko, Shivas, R. G., Summerell, B. A. and Tan, Y. P.. 2010. "A case for re-inventory of Australia's plant pathogens." Persoonia. 25, pp. 50-60. https://doi.org/10.3767/003158510X548668