Re-visiting management options for charcoal rot in sorghum (updated)

Article

Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2019. "Re-visiting management options for charcoal rot in sorghum (updated)." GRDC Communities.
Article Title

Re-visiting management options for charcoal rot in sorghum (updated)

Article CategoryArticle
AuthorsAdorada, Dante (Author), Vaghefi, Niloofar (Author) and Sparks, Adam (Author)
Journal TitleGRDC Communities
Year2019
Place of PublicationAustralia
Web Address (URL)https://communities.grdc.com.au/field-crop-diseases/re-visiting-management-options-charcoal-rot-sorghum/
Abstract

As the 2018/19 summer cropping season draws to a close, sorghum growers are once again confronted with an unfortunate all too familiar problem with charcoal rot and lodging in their paddocks (Figures 1, 2 and 3). This summer season was a text-book case where conditions were ideal for the disease to develop, hot and dry.
Due to the recent issues experienced by growers with charcoal rot, University of Southern Queensland (USQ) is working with the GRDC to collect data from agronomists and growers via a simple survey that will help understand what factors drive disease development and what the associated yield losses may be. If you are a grower or agronomist and are interested in contributing to this work, please contact Dante Adorada by email: dante.adorada@usq.edu.au or by phone: (07) 4631 1262 for more information or download the survey form and send it back to Dante at the e-mail address provided.

Keywordscharcoal rot; sorghum; summer; Australia
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Is new version ofRe-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]
ANZSRC Field of Research 2020300409. Crop and pasture protection (incl. pests, diseases and weeds)
Byline AffiliationsUniversity of Southern Queensland
Institution of OriginUniversity of Southern Queensland
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Purushotham, Neeraj, Jones, Ashley, Poudel, Barsha, Nasim, Jamila, Adorada, Dante, Sparks, Adam, Schwessinger, Benjamin and Vaghefi, Niloofar. 2020. "Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum." Molecular Plant-Microbe Interactions. 33 (5), pp. 724-726. https://doi.org/10.1094/MPMI-12-19-0356-A
Fungal Planet description sheets: 1042-1111
Crous, P. W., Wingfield, M. J., Chooi, Y.-H., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano-Lira, J. F., Valenzuela-Lopez, N., Hubka, V., Shivas, R. G., Stchigel, A. M., Holdom, D. G., Jurjevic, Z., Kachalkin, A. V., Lebel, T., Lock, C., Martin, M. P., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1042-1111." Persoonia. 44, pp. 301-459. https://doi.org/10.3767/persoonia.2020.44.11
Integrated disease management tools to manage summer crop diseases in the northern region
Adorada, Dante. 2019. "Integrated disease management tools to manage summer crop diseases in the northern region." 2019 Hermitage Research Facility Staff Research Partnership Visit. Darling Heights, Toowoomba 09 Oct 2019
Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters
Jeffress, Sarah, Arun-Chinnappa, Kiruba, Stodart, Ben, Vaghefi, Niloofar, Tan, Yu Pei and Ash, Gavin. 2020. "Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters." PLoS One. 15 (5). https://doi.org/10.1371/journal.pone.0227396
A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)
Kusch, Stefan, Nemeth, Mark Z., Vaghefi, Niloofar, Ibrahim, Heba M.M., Panstruga, Ralph and Kiss, Levente. 2020. "A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)." Molecular Plant-Microbe Interactions. 33 (6), pp. 782-786. https://doi.org/10.1094/MPMI-02-20-0029-A
Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia
Vaghefi, Niloofar, Thompson, Susan M., Kimber, Rohan B.E., Thomas, Geoff J., Kant, Pragya, Barbetti, Martin J. and van Leur, Joop A.G.. 2020. "Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia." Mycological Progress: international journal of fungal sciences. 19, pp. 381-396. https://doi.org/10.1007/s11557-020-01566-8
Moisture saves sorghum from disease in parts of the northern region
Adorada, Dante and Sparks, Adam. 2019. "Moisture saves sorghum from disease in parts of the northern region." GRDC Communities.
Low levels of disease persist during the drier summer season in parts of the northern region
Adorada, Dante and Sparks, Adam. 2019. "Low levels of disease persist during the drier summer season in parts of the northern region." GRDC Communities.
Stem rust outbreak in Queensland barley
Park, Robert, Cuddy, Will, Snyman, Lisle and Adorada, Dante. 2019. "Stem rust outbreak in Queensland barley." GroundCover.
Living with the cereal killers of New South Wales: a four-year journey with NSW-DPI Wagga Wagga
Adorada, Dante L.. 2016. "Living with the cereal killers of New South Wales: a four-year journey with NSW-DPI Wagga Wagga." Centre for Crop Health Seminar 2016. Toowoomba, Australia 01 Dec 2016
GRDC milestone updates for BACI 2.0
Adorada, Dante. 2019. GRDC milestone updates for BACI 2.0. Unpublished.
Upscaling models, downscaling data or the right model for the right scale of application?
Sparks, Adam H., Garrett, Karen A., Gilligan, Christopher A., Nelson, Andrew and Pembleton, Keith. 2018. "Upscaling models, downscaling data or the right model for the right scale of application?" 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.
Fungal planet description sheets: 951–1041
Crous, P. W., Wingfield, M. J., Lombard, L., Roets, F., Swart, W. J., Alvarado, P., Carnegie, A. J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A. V., Baseia, I. G., Bellanger, J. -M., Bessette, A. E., Bessette, A. R., De la Pena-Lastra, S., Garcia, D., Gene, J., Pham, T. H. G., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 951–1041." Persoonia. 43, pp. 223-425. https://doi.org/10.3767/persoonia.2019.43.06
Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers
Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, Anke. 2019. "Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers." Plant Pathology. 68 (7), pp. 1331-1336. https://doi.org/10.1111/ppa.13035
Evaluation of the ‘Irish Rules’: The Potato Late Blight Forecasting Model and Its Operational Use in the Republic of Ireland
Cucak, Mladen, Sparks, Adam, de Andrade Moral, Rafael, Kildea, Stephen, Lambkin, Keith and Fealy, Rowan. 2019. "Evaluation of the ‘Irish Rules’: The Potato Late Blight Forecasting Model and Its Operational Use in the Republic of Ireland." Agronomy. 9 (9), pp. 515-539. https://doi.org/10.3390/agronomy9090515
hagis, an R Package Resource for Pathotype Analysis of Phytophthora sojae Populations Causing Stem and Root Rot of Soybean
McCoy, Austin G., Noel, Zachary, Sparks, Adam H. and Chilvers, Martin. 2019. "hagis, an R Package Resource for Pathotype Analysis of Phytophthora sojae Populations Causing Stem and Root Rot of Soybean." Molecular Plant-Microbe Interactions. 32 (12), pp. 1574-1576. https://doi.org/10.1094/MPMI-07-19-0180-A
Genera of phytopathogenic fungi: GOPHY 3
Marin-Felix, Y., Hernandez-Restrepo, M., Iturrieta-Gonzalez, I., Garcia, D., Gene, J., Groenewald, J. Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R. K., Taylor, P. W. J., Ambers, C., Bonthond, G., Edwards, J., Krueger-Hadfield, S. A., Luangsa-ard, J. J., Morton, L., Moslemi, A., Sandoval-Denis, M., ..., Crous, P. W.. 2019. "Genera of phytopathogenic fungi: GOPHY 3." Studies in Mycology. 94, pp. 1-124. https://doi.org/10.1016/j.simyco.2019.05.001
Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin
Knight, Noel L., Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Secor, Gary A., Rivera, Viviana V., Hanson, Linda E., Nelson, Scot C. and Pethybridge, Sarah J.. 2019. "Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin." Phytopathology: International Journal of the American Phytopathological Society. 109 (7), pp. 1280-1292. https://doi.org/10.1094/PHYTO-07-18-0264-R
Impacts of rice diseases in tropical Asia
Castilla, Nancy P., Macasero, John Bethany, Villa, Joselito, Sparks, Adam H., Willocquet, Laetitia and Savary, Serge. 2018. "Impacts of rice diseases in tropical Asia." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.
Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?
Del Ponte, Emerson M., Sparks, Adam H., Cunniffe, Nik J. and Madden, Laurence V.. 2018. "Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?" 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.
Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris
Vaghefi, Niloofar, Silva, Alex, Koenick, Lori B. and Pethybridge, Sarah J.. 2019. "Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris." Molecular Plant-Microbe Interactions. 32 (7), pp. 787-789. https://doi.org/10.1094/MPMI-12-18-0334-A
An international perspective on genetic structure and gene flow in Cercospora beticola populations
Knight, N. L., Vaghefi, N., Kikkert, J., Bolton, M. D., Secor, G. A., Hanson, L., Nelson, S. C. and Pethybridge, S. J.. 2018. "An international perspective on genetic structure and gene flow in Cercospora beticola populations." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States. American Phytopathological Society.
Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA
Koenick, L., Knight, N. L., Vaghefi, N., du Toit, L. and Pethybridge, S. J.. 2018. "Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States.
A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys
Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium. Adelaide, Australia 04 - 08 Sep 2018 Australia.
Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Development of microsatellite markers for quantifying genetic diversity of Pleospora betae
Koenick, Lori, Vaghefi, Niloofar, Knight, Noel L., du Toit, Lindsey and Pethybridge, Sarah J.. 2017. "Development of microsatellite markers for quantifying genetic diversity of Pleospora betae." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Ray blight of pyrethrum in Australia: a review of the current status and future opportunities
Bhuiyan, M. A. H. B., Vaghefi, N. and Taylor, P. W. J.. 2019. "Ray blight of pyrethrum in Australia: a review of the current status and future opportunities." Plant Pathology. 68 (4), pp. 620-627. https://doi.org/10.1111/ppa.13000
Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2018. "Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields." Plant Disease: an international journal of applied plant pathology. 102 (11), pp. 2074-2082. https://doi.org/10.1094/PDIS-01-18-0175-RE
ThetaProbe
Sparks, Adam H.. 2018. ThetaProbe. Adam Sparks. https://doi.org/10.5281/zenodo.1043615
Concepts, approaches, and avenues for modelling crop health and crop losses
Savary, Serge, Nelson, Andrew D., Djurle, Annika, Esker, Paul D., Sparks, Adam H., Amorim, Lilian, Filho, Armamando Bergamin, Caffi, Tito, Castilla, Nancy, Garrett, Karen, McRoberts, Neil, Rossi, Vitorrio, Yuen, Jonathan and Willocquet, Laetitia. 2018. "Concepts, approaches, and avenues for modelling crop health and crop losses." European Journal of Agronomy. 100, pp. 4-18. https://doi.org/10.1016/j.eja.2018.04.003
Linear modelling of soil temperature effects on root lesion nematode population densities in R [Blog post]
Sparks, Adam H. and Thompson, John P.. 2018. "Linear modelling of soil temperature effects on root lesion nematode population densities in R [Blog post]." Open Plant Pathology Notes. February 2018, pp. 1-24. https://doi.org/10.5281/zenodo.1173391
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata
Wingfield, Brenda D., Bills, Gerald F., Dong, Yang, Huang, Wenli, Nel, Wilma J., Swalarsk-Parry, Benedicta S., Vaghefi, Niloofar, Wilken, Markus P., An, Zhiqiang, de Beer, Z. Wilhelm, De Vos, Lieschen, Chen, Li, Duong, Tuan A., Gao, Yun, Hammerbacher, Almuth, Kikkert, Julie R., Li, Yan, Li, Huiying, Li, Kuan, ..., Zhang, Xiaoling. 2018. "Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata." IMA Fungus: the global mycological journal. 9 (1), pp. 199-223. https://doi.org/10.5598/imafungus.2018.09.01.13
Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]
Adorada, Dante, Kelly, Lisa, Vaghefi, Niloofar and Sparks, Adam H,. 2018. "Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]." GRDC Field Crop Diseases Community of Practice. 1 October 2018, pp. 1-8.
DAQ00186 2017 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease
Sparks, Adam H., Adorada, Dante L., Adorada, Encar, Gonzales, Precila, Kelly, Lisa, Sharman, Murray and Grams, Raechelle. 2017. DAQ00186 2017 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease. Australia. Grains Research and Development Corporation.
DAQ00186 2016 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease
Sparks, Adam H., Adorada, Dante, Kelly, Lisa, Sharman, Murray, Thompson, Sue, Wenham, Kylie, White, Jodie and Grams, Raechelle. 2017. DAQ00186 2016 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease. Australia. Grains Research and Development Corporation.
Diagnosing plant diseases: what do we ask and why do we ask for it? [Online community]
Adorada, Dante L., Sigel, Louise, Kelly, Lisa and Sparks, Adam. 2017. "Diagnosing plant diseases: what do we ask and why do we ask for it? [Online community]." GRDC Communities.
Mungbean powdery mildew management with fungicide [Online community]
Sparks, Adam and Kelly, Lisa. 2017. "Mungbean powdery mildew management with fungicide [Online community]." GRDC Communities. 15 December 2017.
Open Data, Materials and Code Introduction
Gacenga, Francis, Sparks, Adam and Del Ponte, Emerson M.. 2019. "Open Data, Materials and Code Introduction." Panczack, R., Gacenga, F., Sparks, A., King, R., Baker, P., Li, L., Schnyder, N., Lim, C. and Vickers-Jones, R. (ed.) Re:Produce Workshop - A Theo Murphy Initiative. Brisbane, Australia 10 - 11 Dec 2019 Australia. https://doi.org/10.17605/OSF.IO/XQ7C5
First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA
Hay, F., Vaghefi, N., Strickland, D., Hadad, R. and Pethybridge, S.. 2018. "First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA." New Disease Reports. 38 (1), pp. 1-1. https://doi.org/10.5197/j.2044-0588.2018.038.001
Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2018. "Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]." eXtension AUS Field Crop Diseases. 19 March 2018, pp. 1-8.
Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris
Vaghefi, Niloofar, Kikkert, Julie R., Hay, Frank S., Carver, Gavriela D., Koenick, Lori B., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2018. "Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris." Fungal Biology. 122 (4), pp. 264-282. https://doi.org/10.1016/j.funbio.2018.01.008
First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note
Hay, F. S., Vaghefi, N., Ivy, A. and Pethybridge, S. J.. 2017. "First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note." Plant Disease: an international journal of applied plant pathology. 101 (1), pp. 248-248. https://doi.org/10.1094/PDIS-05-16-0656-PDN
First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York
Hay, F. S., Maloney, E., Vaghefi, N., Shivas, R. G and Pethybridge, S. J. 2017. "First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York." Plant Disease: an international journal of applied plant pathology. 101 (11), pp. 1953-1953. https://doi.org/10.1094/PDIS-05-17-0648-PDN
PREDICTA®B update and new tests for 2018
McKay, Alan, Simpfendorfer, Steven, Gupta, Vadakattu, Bithell, Sean, Moore, Kevin, Daniel, Richard, Percy, Cassy, White, Jo, Sparks, Adam and Hollaway, Grant. 2018. "PREDICTA®B update and new tests for 2018." GRDC Update Papers.
Spatial and temporal patterns of rice production and productivity
Kannan, Elumalai, Paliwal, Ambica and Sparks, Adam. 2017. "Spatial and temporal patterns of rice production and productivity." Mohanty, Samarendu, Chengappa, P. G., Mruthyunjaya, Mruthyunjaya, Ladha, J. K., Baruah, Sampriti, Kannan, Elumalai and Manjuataha, A. V. (ed.) The future rice strategy for India. London, United Kingdom. Elsevier. pp. 39-68
Diagnosing plant diseases: what do we ask and why do we ask for it?
Adorada, Dante L., Sigel, Luise, Kelly, Lisa and Sparks, Adam H.. 2017. "Diagnosing plant diseases: what do we ask and why do we ask for it?" GRDC Extension AUS. 4 (8).
Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015
Pethybridge, S. J., Vaghefi, N. and Kikkert, J.. 2016. "Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015." Plant Disease Management Reports. 3 (Report No. 10), pp. 1-1.
Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York." Horttechnology. 27 (4), pp. 530-538.
nasapower: a NASA POWER global meteorology, surface solar energy and climatology data client for R [Journal of Open Source Software, vol. 3, no. 30, 1035
Sparks, Adam H.. 2018. nasapower: a NASA POWER global meteorology, surface solar energy and climatology data client for R [Journal of Open Source Software, vol. 3, no. 30, 1035. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.01035
Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata
Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., ..., Wingfield, Michael J.. 2015. "Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata." IMA Fungus: the global mycological journal. 6 (1), pp. 233-248. https://doi.org/10.5598/imafungus.2015.06.01.15
Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields
Vaghefi, Niloofar, Hay, Frank S., Ades, Peter K., Pethybridge, Sarah Jane, Ford, Rebecca and Taylor, Paul W. J.. 2015. "Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields." Phytopathology: International Journal of the American Phytopathological Society. 105 (3), pp. 358-369. https://doi.org/10.1094/PHYTO-08-14-0212-R
Durum wheat quality in high-input irrigation systems in south-eastern Australia
Sissons, Mike, Ovenden, Ben, Adorada, Dante and Milgate, Andrew. 2014. "Durum wheat quality in high-input irrigation systems in south-eastern Australia." Crop and Pasture Science. 65 (5), pp. 411-422. https://doi.org/10.1071/Cp13431
Mungbean and sorghum disease update
Kelly, Lisa, White, Jo, Sharman, Murray, Brier, Hugh, Williams, Liz, Grams, Raechelle, Weir, Duncan, McKay, Alan and Sparks, Adam H.. 2017. "Mungbean and sorghum disease update." GRDC Grains Research Update (Jondaryan) (2017). Jondaryan, Australia 19 Jul 2017 Hornsby, NW, Australia.
Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A., Nelson, Scot C. and Pethybridge, Sarah J.. 2017. "Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing." PLoS One. 12 (10). https://doi.org/10.1371/journal.pone.0186488
Abscisic acid activates pathogenesis-related defense gene signaling in lentils
Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270
Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii
Vaghefi, Niloofar, Nelson, Scot C., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii." Scientific Reports. 7. https://doi.org/10.1038/s41598-017-01929-4
De novo genome assembly of Cercospora beticola for microsatellite marker development and validation
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2017. "De novo genome assembly of Cercospora beticola for microsatellite marker development and validation." Fungal Ecology. 26, pp. 125-134. https://doi.org/10.1016/j.funeco.2017.01.006
Management of cercospora leaf spot in conventional and organic table beet production
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Management of cercospora leaf spot in conventional and organic table beet production." Plant Disease: an international journal of applied plant pathology. 101 (9), pp. 1642-1651. https://doi.org/10.1094/PDIS-04-17-0528-RE
First report of resistance to DMI fungicides in Australian populations of the wheat pathogen Zymoseptoria tritici
Milgate, A., Adorada, D., Orchard, B. and Pattemore, J.. 2016. "First report of resistance to DMI fungicides in Australian populations of the wheat pathogen Zymoseptoria tritici." Plant Disease: an international journal of applied plant pathology. 100 (2), p. 552. https://doi.org/10.1094/PDIS-06-15-0704-PDN
Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management
Vaghefi, N., Kikkert, J. and Pethybridge, S.. 2016. "Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management." 76th Annual Meeting of the Northeastern Division: The American Phytopathological Society. Ithaca, United States 19 - 21 Oct 2016 United States. American Phytopathological Society. https://doi.org/10.1094/PHYTO-107-2-S2.5
Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia
Vaghefi, N., Hay, F. S., Ades, P. K., Pethybridge, S. J., Ford, R. and Taylor, P. W. J.. 2014. "Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia." 10th International Mycological Congress (IMC10 2014). Bangkok, Thailand 03 - 08 Aug 2014
Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W.. 2012. "Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia." 2012 American Phytopathological Society Annual Meeting (APS 2012). Rhode Island, United States of America 04 - 08 Aug 2012 United States. American Phytopathological Society.
Occurrence of winter cereal viruses in New South Wales, Australia, 2006 to 2014
Milgate, Andrew, Adorada, Dante, Chambers, Grant and Terras, Mary Ann. 2016. "Occurrence of winter cereal viruses in New South Wales, Australia, 2006 to 2014." Plant Disease: an international journal of applied plant pathology. 100 (2), pp. 313-317. https://doi.org/10.1094/PDIS-06-15-0650-RE
Incidence and pathogenicity of Didymella americana on table beet in new york
Vaghefi, Niloofar, Kikkert, Julie R. and Pethybridge, Sarah J.. 2016. "Incidence and pathogenicity of Didymella americana on table beet in new york." Plant Health Progress. 17, pp. 270-272. https://doi.org/10.1094/PHP-BR-16-0064
Crop health and its global impacts on the components of food security
Savary, S., Bregaglio, S., Willocquet, L., Gustafson, D., Mason D'Croz, D., Sparks, A., Castilla, N., Djurle, A., Allinne, C., Sharma, Mamta, Rossi, V., Amorim, L., Bergamin, A., Yuen, J., Esker, P., McRoberts, Neil, Avelino, J., Duveiller, E., Koo, J. and Garrett, K.. 2017. "Crop health and its global impacts on the components of food security." Food Security: the science, sociology and economics of food production and access to food. 9 (2), pp. 311-327. https://doi.org/10.1007/s12571-017-0659-1
Plant pathogens as indicators of climate change
Garrett, K. A., Nita, M., De Wolf, E. D., Esker, P. D., Gomez-Montano, L. and Sparks, A. H.. 2016. "Plant pathogens as indicators of climate change." Letcher, Trevor M. (ed.) Climate change: observed impacts on planet Earth. Netherlands. Elsevier. pp. 325-338
A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis
Vaghefi, Niloofar, Mustafa, Barkat M., Dulal, Nabeen, Selby-Pham, Jamie, Taylor, Paul W. J. and Ford, Rebecca. 2013. "A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis." Phytopathologia Mediterranea. 52 (1), pp. 192-201.
A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov.
Barimani, M., Pethybridge, S. J., Vaghefi, N., Hay, F. S. and Taylor, P. W. J.. 2013. "A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov." Plant Pathology. 62 (6), pp. 1248-1257. https://doi.org/10.1111/ppa.12054
Stagonosporopsis spp. associated with ray blight disease of Asteraceae
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W. J.. 2012. "Stagonosporopsis spp. associated with ray blight disease of Asteraceae." Australasian Plant Pathology. 41 (6), pp. 675-686. https://doi.org/10.1007/s13313-012-0161-3
Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields
Vaghefi, Niloofar, Ades, Peter K., Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2015. "Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields." Fungal Biology. 119 (5), pp. 408-419. https://doi.org/10.1016/j.funbio.2014.04.004
Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight
Vaghefi, Niloofar, Pethybridge, Sarah J., Hay, Frank S., Ford, Rebecca, Nicolas, Marc E. and Taylor, Paul W. J.. 2016. "Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight." Australasian Plant Pathology. 45 (6), pp. 561-570. https://doi.org/10.1007/s13313-016-0446-z
Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae
Vaghefi, Niloofar, Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2016. "Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae." European Journal of Plant Pathology. 146 (3), pp. 581-595. https://doi.org/10.1007/s10658-016-0944-4
Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York
Vaghefi, Niloofar, Hay, Frank S., Kikkert, Julie and Pethybridge, Sarah J.. 2016. "Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York." Plant Disease: an international journal of applied plant pathology. 100 (7), pp. 1466-1473. https://doi.org/10.1094/PDIS-09-15-1014-RE
One stop shop: backbone trees for important phytopathogenic genera: I (2014)
Hyde, Kevin D., Nilsson, R. Henrik, Alias, S. Aisyah, Ariyawansa, Hiran A., Blair, Jaime E., Cai, Lei, de Cock, Arthur W. A. M., Dissanayake, Asha J., Glockling, Sally L., Goonasekara, Ishani D., Gorczak, Michal, Hahn, Matthias, Jayawardena, Ruvishika S., van Kan, Jan A. L., Lawrence, Matthew H., Levesque, C. Andre, Li, Xinghong, Liu, Jian-Kui, Maharachchikumbura, Sajeewa S. N., ..., Zhou, Nan. 2014. "One stop shop: backbone trees for important phytopathogenic genera: I (2014)." Fungal Diversity. 67 (1), pp. 21-125. https://doi.org/10.1007/s13225-014-0298-1
Is rice improvement still making a difference? Assessing the economic, poverty and food security impacts of rice varieties released from 1989 to 2009 in Bangladesh, Indonesia and the Philippines
Raitzer, D. A., Sparks, A. H., Huelgas, Z., Maligalig, R., Balangue, Z., Launio, C., Daradjat, A. and Ahmed, H. U.. 2015. Is rice improvement still making a difference? Assessing the economic, poverty and food security impacts of rice varieties released from 1989 to 2009 in Bangladesh, Indonesia and the Philippines. Rome, Italy. CGIAR Independent Science and Partnership Council.
Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii
Vaghefi, Niloofar, Pethybridge, Sarah J., Shivas, Roger G. and Nelson, Scot C.. 2016. "Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii." Australasian Plant Disease Notes. 11 (1), pp. 35-37. https://doi.org/10.1007/s13314-016-0223-4
DAQ00186 2015 annual report
Sparks, Adam H., Kelly, Lisa, Sharman, Murray, Thompson, Sue, Wenham, Kylie and White, Jo. 2016. DAQ00186 2015 annual report. Australia. Grains Research and Development Corporation.
An introduction to key distributions and models in epidemiology using R
Garrett, Karen A., Esker, Paul D. and Sparks, Adam H.. 2015. "An introduction to key distributions and models in epidemiology using R." Stevenson, Katherine L. and Jeger, Michael J. (ed.) Exercises in plant disease epidemiology. St. Paul, Minnesota. American Phytopathological Society. pp. 3-14
Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages
Adorada, Dante L., Stodart, B. J., Vera Cruz, C., Gregorio, G., Pangga, I. and Ash, G. J.. 2013. "Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages." Euphytica: international journal on plant breeding. 192 (1), pp. 1-16. https://doi.org/10.1007/s10681-012-0804-z
Genetic improvement of triticale for irrigated systems in south-eastern Australia: a study of genotype and genotype x environment interactions
Milgate, Andrew, Ovenden, Ben, Adorada, Dante, Lisle, Chris, Lacy, John and Coombes, Neil. 2015. "Genetic improvement of triticale for irrigated systems in south-eastern Australia: a study of genotype and genotype x environment interactions." Crop and Pasture Science. 66 (8), pp. 782-792. https://doi.org/10.1071/CP14357
bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]
Sparks, Adam H., Padgham, Mark, Parsonage, Hugh and Pembleton, Keith. 2017. bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.00411
getCRUCLdata: use and explore CRU CL v. 2.0 climatology elements in R
Sparks, Adam H.. 2017. getCRUCLdata: use and explore CRU CL v. 2.0 climatology elements in R. https://cran.r-project.org/package=getCRUCLdata. Comprehensive R Archive Network. https://doi.org/10.21105/joss.00230
GSODR: Global Summary Daily Weather Data in R
Sparks, Adam H., Hengl, Tomislav and Nelson, Andrew. 2017. GSODR: Global Summary Daily Weather Data in R. https://cran.r-project.org/package=GSODR. Comprehensive R Archive Network. https://doi.org/10.21105/joss.00177
Tapping into ancient sources of disease resistance to protect our modern barley cultivars - barley scald 2015
Adorada, Dante and Milgate, Andrew. 2016. "Tapping into ancient sources of disease resistance to protect our modern barley cultivars - barley scald 2015." Southern NSW Research Results 2015.
Reaction of Australian barley varieties to scald from southern NSW 2015
Adorada, Dante and Milgate, Andrew. 2016. "Reaction of Australian barley varieties to scald from southern NSW 2015." Southern NSW Research Results 2015.
Spatial modelling of rice yield losses in Tanzania due to bacterial leaf blight and leaf blast in a changing climate
Duku, Confidence, Sparks, Adam H. and Zwart, Sander J.. 2016. "Spatial modelling of rice yield losses in Tanzania due to bacterial leaf blight and leaf blast in a changing climate." Climatic Change: an interdisciplinary, international journal devoted to the description, causes and implications of climatic change. 135 (3-4), pp. 569-583. https://doi.org/10.1007/s10584-015-1580-2
Decision tools for bacterial blight resistance gene deployment in rice-based agricultural ecosystems
Dossa, Gerbert S., Sparks, Adam, Vera Cruz, Cassiana and Oliva, Ricardo. 2015. "Decision tools for bacterial blight resistance gene deployment in rice-based agricultural ecosystems." Frontiers in Plant Science. 6, pp. 1-5. https://doi.org/10.3389/fpls.2015.00305
Climate change may have limited effect on global risk of potato late blight
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert J. and Garrett, Karen A.. 2014. "Climate change may have limited effect on global risk of potato late blight." Global Change Biology. 20 (12), pp. 3621-3631. https://doi.org/10.1111/gcb.12587
A review on crop losses, epidemiology and disease management of rice brown spot to identify research priorities and knowledge gaps
Barnwal, M. K., Kotasthane, A., Magculia, N., Mukherjee, P. K., Savary, S., Sharma, A. K., Singh, H. B., Singh, U. S., Sparks, A. H., Variar, M. and Zaidi, N.. 2013. "A review on crop losses, epidemiology and disease management of rice brown spot to identify research priorities and knowledge gaps." European Journal of Plant Pathology. 136 (3), pp. 443-457. https://doi.org/10.1007/s10658-013-0195-6
Taking transgenic rice drought screening to the field
Gaudin, Amelie C. M., Henry, Amelia, Sparks, Adam H. and Slamet-Loedin, Inez H.. 2013. "Taking transgenic rice drought screening to the field." Journal of Experimental Botany. 64 (1), pp. 109-117. https://doi.org/10.1093/jxb/ers313
An economic assessment of the impact of mango pulp weevil on the agricultural sector of Palawan, Philippines
McKinley, Justin D., Sparks, Adam H., Pede, Valerien O. and Duff, Bart. 2012. "An economic assessment of the impact of mango pulp weevil on the agricultural sector of Palawan, Philippines." The Philippine Agricultural Scientist: an international journal of tropical agriculture and related sciences. 95 (3), pp. 286-292.
Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease
Garrett, K. A., Forbes, G. A., Savary, S., Skelsey, P., Sparks, A. H., Valdivia, C., van Bruggen, A. H. C., Willocquet, L., Djurle, A., Duveiller, E., Eckersten, H., Pande, S., Vera Cruz, C. and Yuen, J.. 2011. "Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease." Plant Pathology. 60 (1), pp. 15-30. https://doi.org/10.1111/j.1365-3059.2010.02409.x
International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world
Savary, Serge, Nelson, Andrew, Sparks, Adam H, Willocquet, Laetitia, Duveiller, Etienne, Mahaku, George, Forbes, Greg, Garrett, Karen A., Hodson, David, Padgham, Jon, Pande, Suresh, Sharma, Mamta, Yuen, Jonathan and Djurle, Annika. 2011. "International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world." Plant Disease: an international journal of applied plant pathology. 95 (10), pp. 1204-1216. https://doi.org/10.1094/PDIS-04-11-0316
A metamodeling framework for extending the application domain of process-based ecological models
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert and Garrett, Karen A.. 2011. "A metamodeling framework for extending the application domain of process-based ecological models." Ecosphere. 2 (8). https://doi.org/10.1890/ES11-00128.1
Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity
Adorada, Dante L., Stodart, Benjamin J., Tpoi, Roni P., Costa, Severino S. and Ash, Gavin J.. 2013. "Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia’s biosecurity." Australasian Plant Disease Notes. 8 (1), pp. 43-47. https://doi.org/10.1007/s13314-013-0092-z
Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment
Adorada, D. L., Stodart, B. J., Pangga, I. B. and Ash, G. J.. 2015. "Implications of bacterial contaminated seed lots and endophytic colonization by Pseudomonas fuscovaginae on rice establishment." Plant Pathology. 64 (1), pp. 43-50. https://doi.org/10.1111/ppa.12243
Validation of a major QTL for salinity tolerance on chromosome 1 of rice in three different breeding populations
Islam, M.R., Gregorio, G.B., Salam, M.A., Collard, B.C.Y., Tumimbang-Raiz, E., Adorada, D.L., Mendoza, R.D., Singh, R.K. and Hassan, L.. 2011. "Validation of a major QTL for salinity tolerance on chromosome 1 of rice in three different breeding populations." Agrochimica. 55 (6), pp. 355-366.
Rice varieties and cultural management practices for high and sustained productivity in the coastal wetlands of Southern Bangladesh
Salam, M.A., Islam, M.R., Rahman, M.S., Rahman, M.A., Bhuiyan, M.A.R., Seraj, Z.I., Aditya, T.L., Uddin, M.K., Mondal, M.K., Ismail, A.M., Adorada D.L., Mendoza, R.D., Tumimbang-Raiz, E.B. and Gregorio, G.B.. 2010. "Rice varieties and cultural management practices for high and sustained productivity in the coastal wetlands of Southern Bangladesh." Hoanh, C.T., Szuster, B., Kam, S., Ismail, A. and Noble, A. (ed.) Tropical deltas and coastal zones: Food production, communities and environment at the land and water interface. CABI Publishing - Evidence on Demand. pp. 183-198
The right rice in the right place: systematic exchange and farmer-based evaluation of rice germplasm for salt-affected areas
Singh, R.K., Redoña, E., Gregorio, G.B., Salam, M.A., Islam, M.R., Singh, D.P., Sen, P., Saha, S., Mahata, K.R., Sharma, S.G., Pandey, M.P., Sajise, A.G., Mendoza, R.D., Toledo, M.C., Dante, A., Ismail, A.M., Paris, T.R., Haefele, S.M., Thomson, M.J., ..., Lang, N.T.. 2010. "The right rice in the right place: systematic exchange and farmer-based evaluation of rice germplasm for salt-affected areas." Hoanh, C.T., Szuster, B., Kam, S., Ismail, A. and Noble, A. (ed.) Tropical deltas and coastal zones: Food production, communities and environment at the land and water interface. CABI Publishing - Evidence on Demand. pp. 166-182
Characterizing the Saltol quantitative trait locus for salinity tolerance in rice
Thomson, Michael J., de Ocampo, Marjorie, Egdane, James, Rahman, M. Akhlasur, Sajise, Andres Godwin, Adorada, Dante L., Tumimbang-Raiz, Ellen, Blumwald, Eduardo, Seraj, Zeba I., Singh, Rakesh K., Gregorio, Glenn B. and Ismail, Abdelbagi M.. 2010. "Characterizing the Saltol quantitative trait locus for salinity tolerance in rice." Rice. 3 (2-3), pp. 148-160. https://doi.org/10.1007/s12284-010-9053-8
Disease development and enhanced susceptibility of wounded pepper roots to Phytophthora capsici
Adorada D. L., Biles, C. L., Liddell, C. M., Fernández-Pavía, S., Waugh, K. O. and Waugh, M. E.. 2000. "Disease development and enhanced susceptibility of wounded pepper roots to Phytophthora capsici." Plant Pathology. 49 (6), pp. 719-726. https://doi.org/10.1046/j.1365-3059.2000.00510.x
Phylogeny, Ribosomal RNA Gene Typing and Relative Abundance of New Pseudomonas species (sensu stricto) isolated from Two Pinyon-Juniper Woodland Soils of the Arid Southwest U.S.
Kuske, Cheryl R., Busch, Joseph D., Adorada, Dante L., Dunbar, John M. and Barns, Susan M.. 1999. "Phylogeny, Ribosomal RNA Gene Typing and Relative Abundance of New Pseudomonas species (sensu stricto) isolated from Two Pinyon-Juniper Woodland Soils of the Arid Southwest U.S. " Systematic and Applied Microbiology. 22 (2), pp. 300-311. https://doi.org/10.1016/S0723-2020(99)80077-0
Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil
Kuske, Cheryl R., Banton, Kaysie L., Adorada, Dante L., Stark, Peter C., Hill, Karen K. and Jackson, Paul J. Jackson. 1998. "Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil ." Applied and Environmental Microbiology. 64 (7), pp. 2463-2472. https://doi.org/10.1128/aem.64.7.2463-2472.1998