Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex

Article

Vaghefi, Niloofar, Shivas, Roger G., Sharma, Sandeep, Nelson, Scot C. and Pethybridge, Sarah J.. 2021. "Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex." Mycological Progress: international journal of fungal sciences. 20 (3), pp. 261-287. https://doi.org/10.1007/s11557-021-01666-z

Article Title	Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex
ERA Journal ID	2503
Article Category	Article
Authors	Vaghefi, Niloofar (Author), Shivas, Roger G. (Author), Sharma, Sandeep (Author), Nelson, Scot C. (Author) and Pethybridge, Sarah J.
Journal Title	Mycological Progress: international journal of fungal sciences
Journal Citation	20 (3), pp. 261-287
Number of Pages	27
Year	2021
Publisher	Springer
Place of Publication	Heidelberg, Germany
ISSN	1617-416X
	1861-8952
Digital Object Identifier (DOI)	https://doi.org/10.1007/s11557-021-01666-z
Abstract	The taxonomy of 44 specimens of cercosporoid fungi from Hawaii and New York, USA, was elucidated through multi-locus phylogenetic analyses of the LSU and ITS regions of the nrDNA as well as partial sequences of the actin, calmodulin, histone H3, and translation elongation factor 1-α genes. Sequences of four additional loci, namely, partial beta-tubulin, glyceraldehyde-3-phosphate dehydrogenase, the second largest subunit of RNA polymerase II, and the cercosporin facilitator protein-encoding gene, were used to resolve evolutionary species boundaries within the Cercospora beticola species complex using concatenated multi-locus phylogenies and the genealogical divergence index (gdi). Four novel Cercospora species, C. americana sp. nov., C. hawaiiensis sp. nov., C. manoa sp. nov., and C. tecta sp. nov. are described. Neocercospora carotae comb. nov. is made for Cercospora apii var. carotae, which is neotypified. Cercospora cf. citrulina and Pseudocercospora ocimi-basilici are reported for the first time in Hawaii. Cercospora beticola, Pluripassalora bougainvilleae, and Pseudocercospora pittospori are confirmed in Hawaii. Strelitziana africana, isolated from leaves of Ipomoea pes-caprae and Bougainvillea sp. affected by Cercospora spp., is reported for the first time in the USA.
Keywords	Genealogical divergence index; Neocercospora; Pseudocercospora; Pluripassalora; Strelitziana
ANZSRC Field of Research 2020	310705. Mycology
	310805. Plant pathology
	300409. Crop and pasture protection (incl. pests, diseases and weeds)
Public Notes	Files associated with this item cannot be displayed due to copyright restrictions.
Byline Affiliations	Centre for Crop Health
	Cornell University, United States
	University of Hawaii, United States
Institution of Origin	University of Southern Queensland

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Crous, P. W., Cowan, D. A., Maggs-Kolling, G., Yilmaz, N., Larsson, E., Angelini, C., Brandrud, T. E., Dearnaley, J. D. W., Dima, B., Dovana, F., Fechner, N., Garcia, D., Gene, J., Halling, R. E., Houbraken, J., Leonard, P., Luangsa-ard, J. J., Noisripoom, W., Rea-Ireland, A. E., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1112–1181." Persoonia. 45, pp. 251-409. https://doi.org/10.3767/persoonia.2020.45.10

Whole-Genome Data from Curtobacterium flaccumfaciens pv. flaccumfaciens Strains Associated with Tan Spot of Mungbean and Soybean Reveal Diverse Plasmid Profiles

Vaghefi, Niloofar, Adorada, Dante L., Huth, Lauren, Kelly, Lisa A., Poudel, Barsha, Young, Anthony and Sparks, Adam H.. 2021. "Whole-Genome Data from Curtobacterium flaccumfaciens pv. flaccumfaciens Strains Associated with Tan Spot of Mungbean and Soybean Reveal Diverse Plasmid Profiles." Molecular Plant-Microbe Interactions. 34 (10), pp. 1216-1222. https://doi.org/10.1094/MPMI-05-21-0116-A

Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean

Vaghefi, Niloofar, Adorada, Dante, Adorada, Encarnacion, Kelly, Lisa, Young, Anthony and Sparks, Adam. 2019. "Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean." 2019 Australian Summer Grains Conference: Enduring Farm Profitability (ASCG 2019). Gold Coast, Australia 08 - 10 Jul 2019

What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?

Vaghefi, N., Adorada, D., Adorada, E., Kelly, L., Young, A. and Sparks, A.. 2019. "What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?" 22nd Biennial Australasian Plant Pathology Society Conference (APPS 2019): Strong Foundations, Future Innovations. Melbourne, Australia 25 - 28 Nov 2019

A dynamic portal for a community-driven, continuously updated classification of Fungi and fungus-like organisms: outlineoffungi.org

Wijayawardene, N. N, Hyde, K. D, Dai, D. Q, Tang, L. Z, Aptroot, A, Castaneda-Ruiz, R. F, Druzhinina, I. S, Cai, F, Ekanayaka, A. H, Erdogdu, M, Fiuza, P. O, Gentekaki, E, Goto, B. T, Haelewaters, D, Hongsanan, S, Jeewon, R, Kirk, P. M, Jayalal, R. G. U, Karunarathna, S. C, ..., Thines, M. 2020. "A dynamic portal for a community-driven, continuously updated classification of Fungi and fungus-like organisms: outlineoffungi.org." Mycosphere Online: Journal of Fungal Biology. 11 (1), pp. 1514-1526. https://doi.org/10.5943/mycosphere/11/1/11

Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum

Purushotham, Neeraj, Jones, Ashley, Poudel, Barsha, Nasim, Jamila, Adorada, Dante, Sparks, Adam, Schwessinger, Benjamin and Vaghefi, Niloofar. 2020. "Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum." Molecular Plant-Microbe Interactions. 33 (5), pp. 724-726. https://doi.org/10.1094/MPMI-12-19-0356-A

Fungal Planet description sheets: 1042-1111

Crous, P. W., Wingfield, M. J., Chooi, Y.-H., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano-Lira, J. F., Valenzuela-Lopez, N., Hubka, V., Shivas, R. G., Stchigel, A. M., Holdom, D. G., Jurjevic, Z., Kachalkin, A. V., Lebel, T., Lock, C., Martin, M. P., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1042-1111." Persoonia. 44, pp. 301-459. https://doi.org/10.3767/persoonia.2020.44.11

Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters

Jeffress, Sarah, Arun-Chinnappa, Kiruba, Stodart, Ben, Vaghefi, Niloofar, Tan, Yu Pei and Ash, Gavin. 2020. "Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters." PLoS One. 15 (5). https://doi.org/10.1371/journal.pone.0227396

A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)

Kusch, Stefan, Nemeth, Mark Z., Vaghefi, Niloofar, Ibrahim, Heba M.M., Panstruga, Ralph and Kiss, Levente. 2020. "A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)." Molecular Plant-Microbe Interactions. 33 (6), pp. 782-786. https://doi.org/10.1094/MPMI-02-20-0029-A

Red root rot of Vicia sativa caused by Atractiella rhizophila

Allen, Robert N., Bransgrove, Kaylene and Shivas, Roger G.. 2020. "Red root rot of Vicia sativa caused by Atractiella rhizophila." European Journal of Plant Pathology. 157 (2), pp. 293-297. https://doi.org/10.1007/s10658-020-01985-z

Re-visiting management options for charcoal rot in sorghum (updated)

Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2019. "Re-visiting management options for charcoal rot in sorghum (updated)." GRDC Communities.

Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae

Tanaka, Eiji, Shrestha, Bhushan and Shivas, Roger G.. 2020. "Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae." Mycologia. 112 (3), pp. 649-660. https://doi.org/10.1080/00275514.2020.1745524

Phomopsis husk rot of macadamia in Australia and South Africa caused by novel Diaporthe species

Wrona, Christopher J., Mohankumar, Vheena, Schoeman, Maritha H., Tan, Yu P., Shivas, Roger G.S., Jeff-Ego, Olumide S. and Akinsanmi, Olufemi A.. 2020. "Phomopsis husk rot of macadamia in Australia and South Africa caused by novel Diaporthe species." Plant Pathology. 69 (5), pp. 911-921. https://doi.org/10.1111/ppa.13170

Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia

Vaghefi, Niloofar, Thompson, Susan M., Kimber, Rohan B.E., Thomas, Geoff J., Kant, Pragya, Barbetti, Martin J. and van Leur, Joop A.G.. 2020. "Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia." Mycological Progress: international journal of fungal sciences. 19, pp. 381-396. https://doi.org/10.1007/s11557-020-01566-8

Fungal planet description sheets: 951–1041

Crous, P. W., Wingfield, M. J., Lombard, L., Roets, F., Swart, W. J., Alvarado, P., Carnegie, A. J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A. V., Baseia, I. G., Bellanger, J. -M., Bessette, A. E., Bessette, A. R., De la Pena-Lastra, S., Garcia, D., Gene, J., Pham, T. H. G., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 951–1041." Persoonia. 43, pp. 223-425. https://doi.org/10.3767/persoonia.2019.43.06

Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers

Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, Anke. 2019. "Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers." Plant Pathology. 68 (7), pp. 1331-1336. https://doi.org/10.1111/ppa.13035

Pathogenicity and copper tolerance in Australian Xanthomonas species associated with bacterial leaf spot

Roach, R., Mann, R., Gambley, C. G., Shivas, R. G., Chapman, T. and Rodoni, B.. 2020. "Pathogenicity and copper tolerance in Australian Xanthomonas species associated with bacterial leaf spot." Crop Protection. 127, pp. 1-11. https://doi.org/10.1016/j.cropro.2019.104923

Genera of phytopathogenic fungi: GOPHY 3

Marin-Felix, Y., Hernandez-Restrepo, M., Iturrieta-Gonzalez, I., Garcia, D., Gene, J., Groenewald, J. Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R. K., Taylor, P. W. J., Ambers, C., Bonthond, G., Edwards, J., Krueger-Hadfield, S. A., Luangsa-ard, J. J., Morton, L., Moslemi, A., Sandoval-Denis, M., ..., Crous, P. W.. 2019. "Genera of phytopathogenic fungi: GOPHY 3." Studies in Mycology. 94, pp. 1-124. https://doi.org/10.1016/j.simyco.2019.05.001

Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin

Knight, Noel L., Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Secor, Gary A., Rivera, Viviana V., Hanson, Linda E., Nelson, Scot C. and Pethybridge, Sarah J.. 2019. "Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin." Phytopathology: International Journal of the American Phytopathological Society. 109 (7), pp. 1280-1292. https://doi.org/10.1094/PHYTO-07-18-0264-R

Diversity of Moesziomyces (Ustilaginales, Ustilaginomycotina) on Echinochloa and Leersia (Poaceae)

Li, Ying-Ming, Shivas, Roger G., Li, Bao-Ju and Cai, Lei. 2019. "Diversity of Moesziomyces (Ustilaginales, Ustilaginomycotina) on Echinochloa and Leersia (Poaceae)." MycoKeys. 52, pp. 1-16. https://doi.org/10.3897/mycokeys.52.30461

Fungal planet description sheets: 868–950

Crous, P. W., Carnegie, A. J., Wingfield, M. J., Sharma, R., Mughini, G., Noordeloos, M. E., Santini, A., Shouche, Y. S., Bezerra, J. D. P., Dima, B., Guarnaccia, V., Imrefi, I., Jurjevic, Z., Knapp, D. G., Kovacs, G. M., Magista, D., Perrone, G., Rama, T., Rebriev, Y. A., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 868–950." Persoonia. 42, pp. 291-473. https://doi.org/10.3767/persoonia.2019.42.11

Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited

Tan, Yu Pei, Shivas, Roger G., Marney, Thomas S., Edwards, Jacqueline, Dearnaley, John, Jami, Fahimeh and Burgess, Treena I.. 2019. "Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited." Australasian Plant Pathology. 48 (1), pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7

Biodiscovery and the Queensland Plant Pathology Herbarium

Shivas, Roger G., Beasley, Dean R., Bransgrove, Kaylene, Tan, Yu Pei and Bulow, Geoff. 2019. "Biodiscovery and the Queensland Plant Pathology Herbarium." Microbiology Australia. 40 (3), pp. 134-137. https://doi.org/10.1071/MA19036

One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019)

Jayawardena, Ruvishika S., Hyde, Kevin D., Jeewon, Rajesh, Ghobad-Nejhad, Masoomeh, Wanasinghe, Dhanushka N., Liu, NingGuo, Phillips, Alan J. L., Oliveira-Filho, Jose Ribamar C., da Silva, Gladstone A., Gibertoni, Tatiana B., Abeywikrama, P., Carris, L. M., Chethana, K. W. T., Dissanayake, A. J., Hongsanan, S., Jayasiri, S. C., McTaggart, A. R., Perera, R. H., Phutthacharoen, K., ..., Kang, Ji-Chuan. 2019. "One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019)." Fungal Diversity. 94 (1), pp. 41-129. https://doi.org/10.1007/s13225-019-00418-5

Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia

Thompson, S. M., Tan, Y. P., Neate, S. M., Grams, R. M., Shivas, R. G., Lindbeck, K. and Aitken, E. A. B.. 2018. "Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia." European Journal of Plant Pathology. 152 (3), pp. 823-831. https://doi.org/10.1007/s10658-018-1515-7

Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris

Vaghefi, Niloofar, Silva, Alex, Koenick, Lori B. and Pethybridge, Sarah J.. 2019. "Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris." Molecular Plant-Microbe Interactions. 32 (7), pp. 787-789. https://doi.org/10.1094/MPMI-12-18-0334-A

Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli

Roach, R., Mann, R., Gambley, C. G., Chapman, T., Shivas, R. G. and Rodoni, B.. 2019. "Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli." BMC Genomics. 20 (1 - 310), pp. 1-22. https://doi.org/10.1186/s12864-019-5600-x

An international perspective on genetic structure and gene flow in Cercospora beticola populations

Knight, N. L., Vaghefi, N., Kikkert, J., Bolton, M. D., Secor, G. A., Hanson, L., Nelson, S. C. and Pethybridge, S. J.. 2018. "An international perspective on genetic structure and gene flow in Cercospora beticola populations." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States. American Phytopathological Society.

Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA

Koenick, L., Knight, N. L., Vaghefi, N., du Toit, L. and Pethybridge, S. J.. 2018. "Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States.

A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys

Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium. Adelaide, Australia 04 - 08 Sep 2018 Australia.

Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York

Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.

Development of microsatellite markers for quantifying genetic diversity of Pleospora betae

Koenick, Lori, Vaghefi, Niloofar, Knight, Noel L., du Toit, Lindsey and Pethybridge, Sarah J.. 2017. "Development of microsatellite markers for quantifying genetic diversity of Pleospora betae." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.

Ray blight of pyrethrum in Australia: a review of the current status and future opportunities

Bhuiyan, M. A. H. B., Vaghefi, N. and Taylor, P. W. J.. 2019. "Ray blight of pyrethrum in Australia: a review of the current status and future opportunities." Plant Pathology. 68 (4), pp. 620-627. https://doi.org/10.1111/ppa.13000

Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields

Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2018. "Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields." Plant Disease: an international journal of applied plant pathology. 102 (11), pp. 2074-2082. https://doi.org/10.1094/PDIS-01-18-0175-RE

The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae

Riess, Kai, Schon, Max E., Ziegler, Rebekka, Lutz, Matthias, Shivas, Roger G., Piatek, Marcin and Garnica, Sigisfredo. 2019. "The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae." Organisms Diversity and Evolution. 19 (1), pp. 13-30. https://doi.org/10.1007/s13127-018-0384-4

The first smut fungus, Thecaphora anthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae)

Kruse, Julia, Kummer, Volker, Shivas, Roger G. and Thines, Marco. 2018. "The first smut fungus, Thecaphora anthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae)." MycoKeys. 41, pp. 39-50. https://doi.org/10.3897/mycokeys.41.28454

Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata

Wingfield, Brenda D., Bills, Gerald F., Dong, Yang, Huang, Wenli, Nel, Wilma J., Swalarsk-Parry, Benedicta S., Vaghefi, Niloofar, Wilken, Markus P., An, Zhiqiang, de Beer, Z. Wilhelm, De Vos, Lieschen, Chen, Li, Duong, Tuan A., Gao, Yun, Hammerbacher, Almuth, Kikkert, Julie R., Li, Yan, Li, Huiying, Li, Kuan, ..., Zhang, Xiaoling. 2018. "Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata." IMA Fungus: the global mycological journal. 9 (1), pp. 199-223. https://doi.org/10.5598/imafungus.2018.09.01.13

Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]

Adorada, Dante, Kelly, Lisa, Vaghefi, Niloofar and Sparks, Adam H,. 2018. "Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]." GRDC Field Crop Diseases Community of Practice. 1 October 2018, pp. 1-8.

Current status of the Botryosphaeriaceae in Australia

Burgess, Treena I., Tan, Yu Pei, Garnas, Jeff, Edwards, Jacqueline, Scarlett, Kelly A., Shuttleworth, Lucas A., Daniel, Rosalie, Dann, Elizabeth K., Parkinson, Louisamarie E., Dinh, Quang, Shivas, Roger G. and Jami, Fahimeh. 2019. "Current status of the Botryosphaeriaceae in Australia." Australasian Plant Pathology. 48 (1), pp. 35-44. https://doi.org/10.1007/s13313-018-0577-5

Fungal planet description sheets: 716-784

Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Gene, J., Guarro, J., Baseia, I. G., Garcia, D., Gusmao, L. F. P., Souza-Motta, C. M., Thangavel, R., Adamcik, S., Barili, A., Barnes, C. W., Bezerra, J. D. P., Bordallo, J. J., Cano-Lira, J. F., de Oliveira, R. J. V., Ercole, E., ..., Groenewald, J. Z.. 2018. "Fungal planet description sheets: 716-784." Persoonia. 40, pp. 240-393. https://doi.org/10.3767/persoonia.2018.40.10

Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia

Kiss, Levente, Kovacs, Gabor M., Boka, Karoly, Bohar, Gyula, Boharne, Krisztina Varga, Nemeth, Mark Z., Takamatsu, Susumu, Shin, Hyeon-Dong, Hayova, Vera, Nischwitz, Claudia, Seier, Marion K., Evans, Harry C., Cannon, Paul F., Ash, Gavin James, Shivas, Roger G. and Muller-Scharer, Heinz. 2018. "Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia." Scientific Reports. 8, pp. 1-14. https://doi.org/10.1038/s41598-018-29102-5

First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA

Hay, F., Vaghefi, N., Strickland, D., Hadad, R. and Pethybridge, S.. 2018. "First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA." New Disease Reports. 38 (1), pp. 1-1. https://doi.org/10.5197/j.2044-0588.2018.038.001

First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia

Thompson, S. M., Grams, R. A., Neate, S. M., Shivas, R.G., Ryley, M. J, Tan, Y. P., Aitken, E. A. B., Wright, G. C and O’Connor, D. J.. 2018. "First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia." Plant Disease: an international journal of applied plant pathology. 102 (7), p. 1459. https://doi.org/10.1094/PDIS-12-17-1930-PDN

Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium

Tan, Yu Pei, Crous, Pedro W. and Shivas, Roger G.. 2018. "Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium." MycoKeys. 35, pp. 1-25. https://doi.org/10.3897/mycokeys.35.25665

Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia

Doungsa-ard, C., McTaggart, A. R., Geering, A. D. W. and Shivas, R. G.. 2018. "Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia." Persoonia. 40, pp. 221-238. https://doi.org/10.3767/persoonia.2018.40.09

Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]

Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2018. "Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]." eXtension AUS Field Crop Diseases. 19 March 2018, pp. 1-8.

Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris

Vaghefi, Niloofar, Kikkert, Julie R., Hay, Frank S., Carver, Gavriela D., Koenick, Lori B., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2018. "Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris." Fungal Biology. 122 (4), pp. 264-282. https://doi.org/10.1016/j.funbio.2018.01.008

First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note

Hay, F. S., Vaghefi, N., Ivy, A. and Pethybridge, S. J.. 2017. "First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note." Plant Disease: an international journal of applied plant pathology. 101 (1), pp. 248-248. https://doi.org/10.1094/PDIS-05-16-0656-PDN

A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa

McTaggart, Alistair R., Beasley, Dean R., Wingfield, Michael J., Wood, Alan R., Pretorius, Zakkie K., Drenth, Andre, Shivas, Roger G. and Roux, Jolanda. 2017. "A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa." MycoKeys. 26, pp. 77-83. https://doi.org/10.3897/mycokeys.26.14602

Pathogenicity of nectriaceous fungi on avocado in Australia

Parkinson, Louisamarie E., Shivas, Roger G. and Dann, Elizabeth K.. 2017. "Pathogenicity of nectriaceous fungi on avocado in Australia." Phytopathology: International Journal of the American Phytopathological Society. 107 (12), pp. 1479-1485. https://doi.org/10.1094/PHYTO-03-17-0084-R

First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York

Hay, F. S., Maloney, E., Vaghefi, N., Shivas, R. G and Pethybridge, S. J. 2017. "First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York." Plant Disease: an international journal of applied plant pathology. 101 (11), pp. 1953-1953. https://doi.org/10.1094/PDIS-05-17-0648-PDN

Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia

Giblin, F. R., Tan, Y. P., Mitchell, R., Coates, L. M., Irwin, J. A. G. and Shivas, R.G.. 2018. "Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia." Australasian Plant Pathology. 47 (3), pp. 269-276. https://doi.org/10.1007/s13313-018-0553-0

Identification of Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli crops in eastern Australia

Roach, R., Mann, R., Gambley, C. G., Shivas, R. G. and Rodoni, B.. 2018. "Identification of Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli crops in eastern Australia." European Journal of Plant Pathology. 150 (3), pp. 595-608. https://doi.org/10.1007/s10658-017-1303-9

Notes for genera: Ascomycota

Wijayawardene, Nalin N., Hyde, Kevin D., Rajeshkumar, Kunhiraman C., Hawksworth, David L., Madrid, Hugo, Kirk, Paul M., Braun, Uwe, Singh, Rajshree V., Crous, Pedro W., Kukwa, Martin, Lucking, Robert, Kurtzman, Cletus P., Yurkov, Andrey, Haelewaters, Danny, Aptroot, Andre, Lumbsch, H. Thorsten, Timdal, Einar, Ertz, Damien, Etayo, Javier, ..., Karunarathna, Samantha C.. 2017. "Notes for genera: Ascomycota." Fungal Diversity. 86 (1), pp. 1-594. https://doi.org/10.1007/s13225-017-0386-0

Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015

Pethybridge, S. J., Vaghefi, N. and Kikkert, J.. 2016. "Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015." Plant Disease Management Reports. 3 (Report No. 10), pp. 1-1.

Ten new species of Macalpinomyces on Eriachne in northern Australia

Li, Ying-Ming, Shivas, Roger G., McTaggart, Alistair R., Zhao, Peng and Cai, Lei. 2017. "Ten new species of Macalpinomyces on Eriachne in northern Australia." Mycologia. 109 (3), pp. 408-421. https://doi.org/10.1080/00275514.2017.1330026

Genera of phytopathogenic fungi: GOPHY 1

Marin-Felix, Y., Groenewald, J. Z., Cai, L., Chen, Q., Marincowitz, S., Barnes, I., Bensch, K., Braun, U., Camporesi, E., Damm, U., de Beer, Z. W., Dissanayake, A., Edwards, J., Giraldo, A., Hernandez-Restrepo, M., Hyde, K. D., Jayawardena, R. S., Lombard, L., Luangsa-ard, J., ..., Crous, P. W.. 2017. "Genera of phytopathogenic fungi: GOPHY 1." Studies in Mycology. 86 (86), pp. 99-216. https://doi.org/10.1016/j.simyco.2017.04.002

Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York

Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York." Horttechnology. 27 (4), pp. 530-538.

Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., ..., Wingfield, Michael J.. 2015. "Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata." IMA Fungus: the global mycological journal. 6 (1), pp. 233-248. https://doi.org/10.5598/imafungus.2015.06.01.15

Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields

Vaghefi, Niloofar, Hay, Frank S., Ades, Peter K., Pethybridge, Sarah Jane, Ford, Rebecca and Taylor, Paul W. J.. 2015. "Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields." Phytopathology: International Journal of the American Phytopathological Society. 105 (3), pp. 358-369. https://doi.org/10.1094/PHYTO-08-14-0212-R

Curvularia tsudae comb. nov. et nom. nov., formerly Pseudocochliobolus australiensis, and a revised synonymy for Curvularia australiensis

Deng, Hui, Tan, Yu Pei, Shivas, Roger G. and Niu, Yong Chun. 2015. "Curvularia tsudae comb. nov. et nom. nov., formerly Pseudocochliobolus australiensis, and a revised synonymy for Curvularia australiensis." Mycoscience. 56 (1), pp. 24-28. https://doi.org/10.1016/j.myc.2014.02.002

Johnalcornia gen. et. comb. nov., and nine new combinations in Curvularia based on molecular phylogenetic analysis

Tan, Yu Pei, Madrid, Hugo, Crous, Pedro W. and Shivas, Roger G.. 2014. "Johnalcornia gen. et. comb. nov., and nine new combinations in Curvularia based on molecular phylogenetic analysis." Australasian Plant Pathology. 43 (6), pp. 589-603. https://doi.org/10.1007/s13313-014-0315-6

Ravenelia acaciae-arabicae and Ravenelia evansii are distinct species on Acacia nilotica subsp. indica in India

Shivas, R. G., Balu, A., Singh, S., Ahmed, S. I. and Dhileepan, K.. 2013. "Ravenelia acaciae-arabicae and Ravenelia evansii are distinct species on Acacia nilotica subsp. indica in India." Australasian Mycologist. 31, pp. 31-37.

The Amsterdam Declaration on Fungal Nomenclature

Hawksworth, David L., Crous, Pedro W., Redhead, Scott A., Reynolds, Don R., Samson, Robert A., Seifert, Keith A., Taylor, John W., Wingfield, Michael J., Abaci, Ozlem, Aime, Catherine, Asan, Ahmet, Bai, Feng-Yan, de Beer, Z. Wilhelm, Begerow, Dominik, Berikten, Derya, Boekhout, Teun, Buchanan, Peter K., Burgess, Treena, Buzina, Walter, ..., Zhang, Ning. 2011. "The Amsterdam Declaration on Fungal Nomenclature." IMA Fungus: the global mycological journal. 2 (1), pp. 105-112. https://doi.org/10.5598/imafungus.2011.02.01.14

Fungal planet description sheets: 69-91

Crous, P. W., Groenewald, J. Z., Shivas, R. G., Edwards, J., Seifert, K. A., Alfenas, A. C., Alfenas, R. F., Burgess, T. I., Carnegie, A. J., Hardy, G. E. St J., Quaedvlieg, W., Young, A. J., McTaggart, A. R., Pascoe, I. G., Porter, I. J., Louis-Seize, G., Pereira, O. L., Hüberli, D., Jung, T., ..., White, G. P.. 2011. "Fungal planet description sheets: 69-91." Persoonia. 26, pp. 108-156. https://doi.org/10.3767/003158511X581723

Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black spot

Glienke, C., Pereira, O. L., Stringari, D., Fabris, J., Kava-Cordeiro, V., Galli-Terasawa, L., Cunnington, J., Shivas, R. G., Groenewald, J. Z. and Crous, P. W.. 2011. "Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black spot." Persoonia. 26, pp. 47-56. https://doi.org/10.3767/003158511X569169

Fungal planet description sheets: 107-127

Crous, P. W., Summerell, B. A., Shivas, R. G., Burgess, T. I., Lombard, L., Groenewald, J. Z., Liew, E. C Y, McTaggart, A. R., Hardy, G. E S J, Huberli, D., De cock, C. A., Dreyer, L. L., Granke, L. L., Hausbeck, M. K., Guest, D. I., Shuttleworth, L. A., Jung, T., Koukol, O., Lennox, C. L., ..., Windstam, S. T.. 2012. "Fungal planet description sheets: 107-127." Persoonia. 28, pp. 138-182. https://doi.org/10.3767/003158512X652633

Fungal planet description sheets: 320–370

Crous, P. W., Wingfield, M. J., Guarro, J., Hernandez-Restrep, M., Sutton, D. A., Acharya, K., Barber, P. A., Boekhout, T., Dimitrov, R. A., Duenas, M., Dutta, A. K., Gene, J., Gouliamova, D. E., Groenewald, M., Lombard, L., Morozova, O. V., Sarkar, J., Smith, M. Th., Stchigel, A. M., ..., Groenewald, J. Z.. 2015. "Fungal planet description sheets: 320–370." Persoonia. 34, pp. 167-266. https://doi.org/10.3767/003158515X688433

Novel species of Cercospora and Pseudocercospora (Capnodiales, Mycosphaerellaceae) from Australia

Shivas, Roger Graham, Marney, Thomas Stephen, Tan, Yu Pei and McTaggart, Alistair Ross. 2015. "Novel species of Cercospora and Pseudocercospora (Capnodiales, Mycosphaerellaceae) from Australia." Fungal Biology. 119 (5), pp. 362-369. https://doi.org/10.1016/j.funbio.2014.09.004

Wongia gen. nov. (Papulosaceae, Sordariomycetes), a new generic name for two root-infecting fungi from Australia

Khemmuk, Wanporn, Geering, Andrew D. W. and Shivas, Roger G.. 2016. "Wongia gen. nov. (Papulosaceae, Sordariomycetes), a new generic name for two root-infecting fungi from Australia." IMA Fungus: the global mycological journal. 7 (2), pp. 247-252. https://doi.org/10.5598/imafungus.2016.07.02.04

A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex

Manamgoda, Dimuthu S., Cai, Lei, McKenzie, Eric H. C., Crous, Pedro W., Madrid, Hugo, Chukeatirote, Ekachai, Shivas, Roger G., Tan, Yu Pei and Hyde, Kevin D.. 2012. "A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex." Fungal Diversity. 56 (1), pp. 131-144. https://doi.org/10.1007/s13225-012-0189-2

Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia

Tan, Y. P., Edwards, J., Grice, K. R E and Shivas, R. G.. 2013. "Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia." Fungal Diversity. 61 (1), pp. 251-260. https://doi.org/10.1007/s13225-013-0242-9

Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales)

Shivas, Roger G., Beasley, Dean R. and McTaggart, Alistair R.. 2014. "Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales)." IMA Fungus: the global mycological journal. 5 (2), pp. 195-202. https://doi.org/10.5598/imafungus.2014.05.02.03

Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews

Thines, Marco, Telle, Sabine, Choi, Young Joon, Tan, Yu Pei and Shivas, Roger G.. 2015. "Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews." IMA Fungus: the global mycological journal. 6 (2), pp. 483-491. https://doi.org/10.5598/imafungus.2015.06.02.12

Novel Pathotypes of Elsinoë australis Associated with Citrus australasica and Simmondsia chinensis in Australia

Miles, Andrew K., Tan, Yu Pei, Shivas, Roger G. and Drenth, André. 2015. "Novel Pathotypes of Elsinoë australis Associated with Citrus australasica and Simmondsia chinensis in Australia." Tropical Plant Pathology. 40 (1), pp. 26-34. https://doi.org/10.1007/s40858-015-0005-0

Mycosarcoma (Ustilaginaceae), a resurrected generic name for corn smut (Ustilago maydis) and its close relatives with hypertrophied, tubular sori

McTaggart, Alistair R., Shivas, Roger G., Boekhout, Teun, Oberwinkler, Franz, Vanky, Kalman, Pennycook, Shaun R. and Begerow, Dominik. 2016. "Mycosarcoma (Ustilaginaceae), a resurrected generic name for corn smut (Ustilago maydis) and its close relatives with hypertrophied, tubular sori." IMA Fungus: the global mycological journal. 7 (2), pp. 309-315. https://doi.org/10.5598/imafungus.2016.07.02.10

Colletotrichum species in Australia

Shivas, Roger G., Tan, Yu Pei, Edwards, Jacqueline, Dinh, Quang, Maxwell, Aaron, Andjic, Vera, Liberato, José R., Anderson, Chris, Beasley, Dean R., Bransgrove, Kaylene, Coates, Lindy M., Cowan, Karren, Daniel, Rosalie, Dean, Jan R., Lomavatu, Mereia Fong, Mercado-Escueta, Doris, Mitchell, Roger W., Thangavel, Raja, Tran-Nguyen, Lucy T T and Weir, Bevan S.. 2016. "Colletotrichum species in Australia." Australasian Plant Pathology. 45 (5), pp. 447-464. https://doi.org/10.1007/s13313-016-0443-2

Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP)

Tan, Yu Pei, Shivas, Roger G. and Crous, Pedro W.. 2016. "Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP)." Mycological Progress: international journal of fungal sciences. 15 (10-11), pp. 1203-1214. https://doi.org/10.1007/s11557-016-1240-6

Phyllosticta species on orchids (Orchidaceae), introducing Phyllosticta speewahensis sp. nov. (Phyllostictaceae, Ascomycota) from northern Australia

Shivas, Roger Graham, Tan, Yu Pei and Grice, Kathy R. E.. 2013. "Phyllosticta species on orchids (Orchidaceae), introducing Phyllosticta speewahensis sp. nov. (Phyllostictaceae, Ascomycota) from northern Australia." Sydowia: an international journal of mycology. 65 (1), pp. 139-146.

Dry flower disease of Macadamia in Australia caused by Neopestalotiopsis macadamiae sp. nov. and Pestalotiopsis macadamiae sp. nov

Akinsanmi, Olufemi A., Nisa, Shaheen, Jeff-Ego, Olumdie S., Shivas, Roger G. and Drenth, Andre. 2017. "Dry flower disease of Macadamia in Australia caused by Neopestalotiopsis macadamiae sp. nov. and Pestalotiopsis macadamiae sp. nov." Plant Disease: an international journal of applied plant pathology. 101 (1), pp. 45-53. https://doi.org/10.1094/PDIS-05-16-0630-RE

Genome sequences of Pseudomonas spp. isolated from cereal crops

Gardiner, Donald M., Stiller, Jiri, Covarelli, Lorenzo, Lindeberg, Magdalen, Shivas, Roger G. and Manners, John M.. 2013. "Genome sequences of Pseudomonas spp. isolated from cereal crops." Genome Announcements. 1 (3), pp. 1-2. https://doi.org/10.1128/genomeA.00209-13

Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing

Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A., Nelson, Scot C. and Pethybridge, Sarah J.. 2017. "Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing." PLoS One. 12 (10). https://doi.org/10.1371/journal.pone.0186488

Abscisic acid activates pathogenesis-related defense gene signaling in lentils

Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270

Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii

Vaghefi, Niloofar, Nelson, Scot C., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii." Scientific Reports. 7. https://doi.org/10.1038/s41598-017-01929-4

De novo genome assembly of Cercospora beticola for microsatellite marker development and validation

Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2017. "De novo genome assembly of Cercospora beticola for microsatellite marker development and validation." Fungal Ecology. 26, pp. 125-134. https://doi.org/10.1016/j.funeco.2017.01.006

Management of cercospora leaf spot in conventional and organic table beet production

Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Management of cercospora leaf spot in conventional and organic table beet production." Plant Disease: an international journal of applied plant pathology. 101 (9), pp. 1642-1651. https://doi.org/10.1094/PDIS-04-17-0528-RE

Two new species of Moreaua (Ustilaginomycetes), on Actinoschoenus and Chrysitrix, from Western Australia

Shivas, Roger G., Barrett, Matthew D., Barrett, Russell L. and Vanky, Kalman. 2011. "Two new species of Moreaua (Ustilaginomycetes), on Actinoschoenus and Chrysitrix, from Western Australia." Mycologia Balcanica. 8, pp. 137-140.

Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management

Vaghefi, N., Kikkert, J. and Pethybridge, S.. 2016. "Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management." 76th Annual Meeting of the Northeastern Division: The American Phytopathological Society. Ithaca, United States 19 - 21 Oct 2016 United States. American Phytopathological Society. https://doi.org/10.1094/PHYTO-107-2-S2.5

Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia

Vaghefi, N., Hay, F. S., Ades, P. K., Pethybridge, S. J., Ford, R. and Taylor, P. W. J.. 2014. "Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia." 10th International Mycological Congress (IMC10 2014). Bangkok, Thailand 03 - 08 Aug 2014

Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia

Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W.. 2012. "Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia." 2012 American Phytopathological Society Annual Meeting (APS 2012). Rhode Island, United States of America 04 - 08 Aug 2012 United States. American Phytopathological Society.

Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches

Li, Ying-Ming, Shivas, Roger G. and Cai, Lei. 2017. "Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches." Scientific Reports. 7. https://doi.org/10.1038/srep43549

Novel species of Gliocladiopsis (Nectriaceae, Hypocreales, Ascomycota) from avocado roots (Persea americana) in Australia

Parkinson, Louisamarie E., Shivas, Roger G. and Dann, Elizabeth K.. 2017. "Novel species of Gliocladiopsis (Nectriaceae, Hypocreales, Ascomycota) from avocado roots (Persea americana) in Australia." Mycoscience. 58 (2), pp. 95-102. https://doi.org/10.1016/j.myc.2016.10.004

Incidence and pathogenicity of Didymella americana on table beet in new york

Vaghefi, Niloofar, Kikkert, Julie R. and Pethybridge, Sarah J.. 2016. "Incidence and pathogenicity of Didymella americana on table beet in new york." Plant Health Progress. 17, pp. 270-272. https://doi.org/10.1094/PHP-BR-16-0064

First record of Ustilago sporoboli-indici in Australia

Vitelli, J. S., Tan, Y. P., Riding, N., Holdom, D. G., Chamberlain, A. and Shivas, R.G.. 2017. "First record of Ustilago sporoboli-indici in Australia." Australasian Plant Disease Notes. 12 (1), pp. 1-3. https://doi.org/10.1007/s13314-017-0277-y

A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis

Vaghefi, Niloofar, Mustafa, Barkat M., Dulal, Nabeen, Selby-Pham, Jamie, Taylor, Paul W. J. and Ford, Rebecca. 2013. "A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis." Phytopathologia Mediterranea. 52 (1), pp. 192-201.

A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov.

Barimani, M., Pethybridge, S. J., Vaghefi, N., Hay, F. S. and Taylor, P. W. J.. 2013. "A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov." Plant Pathology. 62 (6), pp. 1248-1257. https://doi.org/10.1111/ppa.12054

Stagonosporopsis spp. associated with ray blight disease of Asteraceae

Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W. J.. 2012. "Stagonosporopsis spp. associated with ray blight disease of Asteraceae." Australasian Plant Pathology. 41 (6), pp. 675-686. https://doi.org/10.1007/s13313-012-0161-3

Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields

Vaghefi, Niloofar, Ades, Peter K., Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2015. "Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields." Fungal Biology. 119 (5), pp. 408-419. https://doi.org/10.1016/j.funbio.2014.04.004

Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight

Vaghefi, Niloofar, Pethybridge, Sarah J., Hay, Frank S., Ford, Rebecca, Nicolas, Marc E. and Taylor, Paul W. J.. 2016. "Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight." Australasian Plant Pathology. 45 (6), pp. 561-570. https://doi.org/10.1007/s13313-016-0446-z

Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae

Vaghefi, Niloofar, Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2016. "Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae." European Journal of Plant Pathology. 146 (3), pp. 581-595. https://doi.org/10.1007/s10658-016-0944-4

Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York

Vaghefi, Niloofar, Hay, Frank S., Kikkert, Julie and Pethybridge, Sarah J.. 2016. "Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York." Plant Disease: an international journal of applied plant pathology. 100 (7), pp. 1466-1473. https://doi.org/10.1094/PDIS-09-15-1014-RE

First report of rice blast (Magnaporthe Oryzae) on rice (Oryza Sativa) in Western Australia

You, M. P., Lanoiselet, V., Wang, C. P., Shivas, R. G., Li, Y. P. and Barbetti, M. J.. 2012. "First report of rice blast (Magnaporthe Oryzae) on rice (Oryza Sativa) in Western Australia." Plant Disease: an international journal of applied plant pathology. 96 (8), pp. 1228-1229. https://doi.org/10.1094/PDIS-05-12-0420-PDN

First report of Sarocladium Oryzae causing sheath rot on rice (Oryza sativa) in Western Australia

Lanoiselet, V., You, M. P., Li, Y. P., Wang, C. P., Shivas, R. G. and Barbetti, M. J.. 2012. "First report of Sarocladium Oryzae causing sheath rot on rice (Oryza sativa) in Western Australia." Plant Disease: an international journal of applied plant pathology. 96 (9), pp. 1382-1383. https://doi.org/10.1094/PDIS-04-12-0415-PDN

First record of Thyronectria pinicola on Pinus radiata in Australia

Carnegie, A. J., Shuey, L. S., McTaggart, A. R. and Shivas, R. G.. 2015. "First record of Thyronectria pinicola on Pinus radiata in Australia." Plant Disease: an international journal of applied plant pathology. 99 (8), pp. 1182-1183. https://doi.org/10.1094/PDIS-02-15-0187-PDN

Host jumps shaped the diversity of extant rust fungi (Pucciniales)

McTaggart, Alistair R., Shivas, Roger G., van der Nest, Magriet A., Roux, Jolanda, Wingfield, Brenda D. and Wingfield, Michael J.. 2015. "Host jumps shaped the diversity of extant rust fungi (Pucciniales)." New Phytologist. 209 (3), pp. 1149-1158. https://doi.org/10.1111/nph.13686

Synopsis of Phyllosticta in China

Zhang, Ke, Shivas, Roger G. and Cai, Lei. 2015. "Synopsis of Phyllosticta in China." Mycology. 6 (1), pp. 50-75. https://doi.org/10.1080/21501203.2015.1027507

Uredinopsis pteridis and Desmella aneimiae, the first rust fungi (Pucciniales) reported on ferns (Pteridophyta) in Australia

McTaggart, A. R., Geering, A. D. W. and Shivas, R. G.. 2014. "Uredinopsis pteridis and Desmella aneimiae, the first rust fungi (Pucciniales) reported on ferns (Pteridophyta) in Australia." Australasian Plant Pathology. 9 (1), pp. 149-152. https://doi.org/10.1007/s13314-014-0149-7

One stop shop: backbone trees for important phytopathogenic genera: I (2014)

Hyde, Kevin D., Nilsson, R. Henrik, Alias, S. Aisyah, Ariyawansa, Hiran A., Blair, Jaime E., Cai, Lei, de Cock, Arthur W. A. M., Dissanayake, Asha J., Glockling, Sally L., Goonasekara, Ishani D., Gorczak, Michal, Hahn, Matthias, Jayawardena, Ruvishika S., van Kan, Jan A. L., Lawrence, Matthew H., Levesque, C. Andre, Li, Xinghong, Liu, Jian-Kui, Maharachchikumbura, Sajeewa S. N., ..., Zhou, Nan. 2014. "One stop shop: backbone trees for important phytopathogenic genera: I (2014)." Fungal Diversity. 67 (1), pp. 21-125. https://doi.org/10.1007/s13225-014-0298-1

Cryptic fungal species unmasked

Shivas, Roger G. and Cai, Lei. 2012. "Cryptic fungal species unmasked." Microbiology Australia. 33 (1), pp. 36-37.

Polyphasic characterization of four new plant pathogenic Phyllosticta species from China, Japan, and the United States

Zhou, Nan, Chen, Qian, Carroll, George, Zhang, Ning, Shivas, Roger G. and Cai, Lei. 2015. "Polyphasic characterization of four new plant pathogenic Phyllosticta species from China, Japan, and the United States." Fungal Biology. 119 (5), pp. 433-466. https://doi.org/10.1016/j.funbio.2014.08.006

Puccinia psidii in Queensland, Australia: disease symptoms, distribution and impact

Pegg, G. S., Giblin, F. R., McTaggart, A. R., Guymer, G. P., Taylor, H., Ireland, K. B., Shivas, R. G. and Perry, S.. 2014. "Puccinia psidii in Queensland, Australia: disease symptoms, distribution and impact." Plant Pathology. 63 (5), pp. 1005-1021. https://doi.org/10.1111/ppa.12173

Two new Entyloma species (Entylomatales, Ustilaginomycota) from the USA

Denchev, Teodor T., Denchev, Cvetomir M. and Shivas, Roger G.. 2013. "Two new Entyloma species (Entylomatales, Ustilaginomycota) from the USA." Mycobiota. 3 (3), pp. 35-39. https://doi.org/10.12664/mycobiota.2013.03.04

Emended description of Anomalomyces (Ustilaginales), including Anomalomyces yakirrae sp. nov. on Yakirra paucifl pauciflora (Poaceae) from Australia

Shivas, Roger G., Lutz, Matthias, McTaggart, Alistair R. and Vanky, Kalman. 2013. "Emended description of Anomalomyces (Ustilaginales), including Anomalomyces yakirrae sp. nov. on Yakirra paucifl pauciflora (Poaceae) from Australia." Mycobiota. 1, pp. 17-24. https://doi.org/10.12664/mycobiota.2013.01.03

Eriocortex eriocauli, gen. et sp. nov. (Ustilaginomycetes) from Australia

Vanky, Kalman, Shivas, Roger G., Barrett, Matthew D. and Lutz, Matthias. 2013. "Eriocortex eriocauli, gen. et sp. nov. (Ustilaginomycetes) from Australia." Mycobiota. 1, pp. 9-16. https://doi.org/10.12664/mycobiota.2013.01.02

Aizoago, a new genus, and two new species of smut fungi (Ustilaginales) on Tetragonia (Aizoaceae) in Australia

Vanky, Kalman and Shivas, Roger G.. 2013. "Aizoago, a new genus, and two new species of smut fungi (Ustilaginales) on Tetragonia (Aizoaceae) in Australia." Mycobiota. 1, pp. 1-7. https://doi.org/10.12664/mycobiota.2013.01.01

Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers

O'Malley, Thomas B., Hay, Frank S., Scott, Jason B., Gent, David H., Shivas, Roger G. and Pethybridge, Sarah J.. 2015. "Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers." Canadian Journal of Plant Pathology. 37 (2), pp. 179-187. https://doi.org/10.1080/07060661.2015.1036122

The Colletotrichum boninense species complex

Damm, U., Cannon, P. F., Woudenberg, J. H C., Johnston, P. R., Weir, B. S., Tan, Y. P., Shivas, R. G. and Crous, P. W.. 2012. "The Colletotrichum boninense species complex." Studies in Mycology. 73 (73), pp. 1-36. https://doi.org/10.3114/sim0002

Erratum to: Identification of rust fungi (Pucciniales) on species of Allium in Australia (Australasian Plant Pathology, (2016), 45, 6, (581-592), 10.1007/s13313-016-0445-0)

McTaggart, Alistair R., Shivas, Roger G., Doungsa-ard, Chanintorn, Weese, Terri L., Beasley, Dean R., Hall, Barbara H., Metcalf, Dean A. and Geering, Andrew D W. 2016. "Erratum to: Identification of rust fungi (Pucciniales) on species of Allium in Australia (Australasian Plant Pathology, (2016), 45, 6, (581-592), 10.1007/s13313-016-0445-0)." Australasian Plant Pathology. 45 (6), pp. 593-594. https://doi.org/10.1007/s13313-016-0451-2

Three new species of Tilletia on Eriachne from north-western Australia

Li, Ying-Ming, Shivas, Roger Graham and Cai, Lei. 2014. "Three new species of Tilletia on Eriachne from north-western Australia." Mycoscience. 55 (5), pp. 361-366. https://doi.org/10.1016/j.myc.2013.12.003

Pathogenicity studies in avocado with three nectriaceous fungi, Calonectria ilicicola, Gliocladiopsis sp. and Ilyonectria liriodendri

Dann, E. K., Cooke, A. W., Forsberg, L. I., Pegg, K. G., Tan, Y. P. and Shivas, R. G.. 2012. "Pathogenicity studies in avocado with three nectriaceous fungi, Calonectria ilicicola, Gliocladiopsis sp. and Ilyonectria liriodendri." Plant Pathology. 61 (5), pp. 896-902. https://doi.org/10.1111/j.1365-3059.2011.02579.x

Powdery mildews on Clitoria in Australia

Liberato, José R. and Shivas, Roger G.. 2012. "Powdery mildews on Clitoria in Australia." Australasian Plant Disease Notes. 7 (1), pp. 111-114. https://doi.org/10.1007/s13314-012-0060-z

Fungal planet description sheets: 128-153

Crous, P. W., Shivas, R. G., Wingfield, M. J., Summerell, B. A., Rossman, A. Y., Alves, J. L., Adams, G. C., Barreto, R. W., Bell, A., Coutinho, M. L., Lombard, L., Quaedvlieg, W., Videira, S. I R, Groenewald, J. Z., Tan, Y. P., Mahoney, D. P., Macedo, F., Flory, S. L., Gates, G., ..., Walker, D. M.. 2012. "Fungal planet description sheets: 128-153." Persoonia. 29, pp. 146-201. https://doi.org/10.3767/003158512X661589

Epitypification and neotypification: guidelines with appropriate and inappropriate examples

Ariyawansa, Hiran A., Hawksworth, David L., Hyde, Kevin D., Jones, E. B. Gareth, Maharachchikumbura, Sajeewa S. N., Manamgoda, Dimuthu S., Thambugala, Kasun M., Udayanga, Dhanushka, Camporesi, Erio, Daranagama, Anupama, Jayawardena, Ruvishika, Liu, Jian-Kui, McKenzie, Eric H. C., Phookamsak, Rungtiwa, Senanayake, Indunil C., Shivas, Roger G., Tian, Qing and Xu, Jian-Chu. 2014. "Epitypification and neotypification: guidelines with appropriate and inappropriate examples." Fungal Diversity. 69 (1), pp. 57-91. https://doi.org/10.1007/s13225-014-0315-4

Survey and prioritisation of potential biological control agents for prickly acacia (Acacia nilotica subsp. indica) in southern India

Dhileepan, Kunjithapatham, Balu, Ayyapillai, Murugesan, Selvaraj, Senthilkumar, Ponnusamy and Shivas, Roger G.. 2013. "Survey and prioritisation of potential biological control agents for prickly acacia (Acacia nilotica subsp. indica) in southern India." Biocontrol Science and Technology. 23 (6), pp. 646-664. https://doi.org/10.1080/09583157.2013.788689

Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

Wijayawardene, Nalin N., Crous, Pedro W., Kirk, Paul M., Hawksworth, David L., Boonmee, Saranyaphat, Braun, Uwe, Dai, Dong Qin, D'souza, Melvina J., Diederich, Paul, Dissanayake, Asha, Phookamsak, Rungtiwa, Hyde, Kevin D., Doilom, Mingkhuan, Hongsanan, Singang, Jayawardena, Ruvishika, Liu, Jian-Kui, Manamgoda, Dimuthu S., Thambugala, Kasun M., Wanasinghe, Dhanushka N., ..., Jaklitsch, Walter M.. 2014. "Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names." Fungal Diversity. 69 (1), pp. 1-55. https://doi.org/10.1007/s13225-014-0309-2

Fungal planet description sheets: 92-106

Crous, P. W., Verkley, G. J M, Groenewald, J. Z., Summerell, B. A., Shivas, R. G., Romberg, M. and Mel'nik, V. A.. 2011. "Fungal planet description sheets: 92-106." Persoonia. 27, pp. 130-162. https://doi.org/10.3767/003158511X617561

A re-appraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov

Crous, P. W., Summerell, B. A., Shivas, R. G., Carnegie, A. J. and Groenewald, J. Z.. 2012. "A re-appraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov." Persoonia. 28, pp. 49-65. https://doi.org/10.3767/003158512X639791

The evolution of species concepts and species recognition criteria in plant pathogenic fungi

Cai, Lei, Giraud, Tatiana, Zhang, Ning, Cai, Guohong, Begerow, Dominik and Shivas, Roger G.. 2011. "The evolution of species concepts and species recognition criteria in plant pathogenic fungi." Fungal Diversity. 50 (1), pp. 121-133. https://doi.org/10.1007/s13225-011-0127-8

Soral synapomorphies are significant for the systematics of the Ustilago-Sporisorium-Macalpinomyces complex (Ustilaginaceae)

McTaggart, A. R., Shivas, R. G., Geering, A. D W, Callaghan, B., Vanky, K. and Scharaschkin, T.. 2012. "Soral synapomorphies are significant for the systematics of the Ustilago-Sporisorium-Macalpinomyces complex (Ustilaginaceae)." Persoonia. 29, pp. 63-77. https://doi.org/10.3767/003158512X660562

A review of the Ustilago-Sporisorium-Macalpinomyces complex

McTaggart, A. R., Shivas, R. G., Geering, A. D. W., Vanky, K. and Scharaschkin, T.. 2012. "A review of the Ustilago-Sporisorium-Macalpinomyces complex." Persoonia. 29, pp. 55-62. https://doi.org/10.3767/003158512X660283

Taxonomic revision of Ustilago, Sporisorium and Macalpinomyces

McTaggart, A. R., Shivas, R. G., Geering, A. D. W., Vanky, K. and Scharaschkin, T.. 2012. "Taxonomic revision of Ustilago, Sporisorium and Macalpinomyces." Persoonia. 29, pp. 116-132. https://doi.org/10.3767/003158512X661462

Fungal planet description sheets: 214-280

Crous, P. W., Shivas, R. G., Quaedvlieg, W., Lombard, L., Groenewald, J. Z., van der Bank, M., Zhang, Y., Summerell, B. A., Guarro, J., Wingfield, M. J., Tan, Y. P., Cano-Lira, J. F., García, D., Marin-Felix, Y., Alvarado, P., Gené, J., Hernández-Restrepo, M., Marin-Felix, Y., Stchigel, A. M., ..., Wong, P. T. W.. 2014. "Fungal planet description sheets: 214-280." Persoonia. 32, pp. 184-306. https://doi.org/10.3767/003158514X682395

Fungal planet description sheets: 371–399

Crous, P. W., Wingfield, M. J., Le Roux, J. J., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G., Sharma, R., Sonawane, M. S., Tan, Y. P., Altes, A., Barasubiye, T., Barnes, C. W., Blanchette, R. A., Boertmann, D., Bogo, A., Carlavilla, J. R., ..., Groenewald, J. Z.. 2015. "Fungal planet description sheets: 371–399." Persoonia. 35, pp. 264-327. https://doi.org/10.3767/003158515X690269

Fungal planet description sheets: 469-557

Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Crane, C., Barrett, S., Cano-Lira, J. F., Le Roux, J. J., Thangavel, R., Guarro, J., Stchigel, A. M., Martin, M. P., Alfredo, D. S., Barber, P. A., Barreto, R. W., Baseia, I. G., Cano-Canals, J., Cheewangkoon, R., Ferreira, R. J., ..., Groenewald, J. Z.. 2016. "Fungal planet description sheets: 469-557." Persoonia. 37, pp. 218-403. https://doi.org/10.3767/003158516X694499

The rusts on Goodeniaceae and Stylidiaceae

McTaggart, A. R., Geering, A. D. W. and Shivas, R. G.. 2014. "The rusts on Goodeniaceae and Stylidiaceae." Mycological Progress: international journal of fungal sciences. 13 (4), pp. 1017-1025. https://doi.org/10.1007/s11557-014-0989-8

Phylogeny and taxonomy of the genus Cylindrocladiella

Lombard, L., Shivas, R. G., To-Anun, C. and Crous, P. W.. 2012. "Phylogeny and taxonomy of the genus Cylindrocladiella." Mycological Progress: international journal of fungal sciences. 11 (4), pp. 835-868. https://doi.org/10.1007/s11557-011-0799-1

Sporisorium warambiense sp. nov., a fourth smut fungus on Xerochloa in Australia

Piatek, Marcin and Shivas, Roger G.. 2011. "Sporisorium warambiense sp. nov., a fourth smut fungus on Xerochloa in Australia." Mycological Progress: international journal of fungal sciences. 10 (1), pp. 57-60. https://doi.org/10.1007/s11557-010-0673-6

Real-time PCR assays for the detection of Puccinia psidii

Baskarathevan, Jeyaseelan, Taylor, R. K., Ho, W., Alexander, B. J. R., McDougal, R. L. and Shivas, R. G.. 2016. "Real-time PCR assays for the detection of Puccinia psidii." Plant Disease: an international journal of applied plant pathology. 100 (3), pp. 617-624. https://doi.org/10.1094/PDIS-08-15-0851-RE

First report of Didymella americana on baby lima bean (Phaseolus lunatus)

Gorny, Adrienne M., Pethybridge, Sarah J., Kikkert, Julie R. and Shivas, Roger G.. 2016. "First report of Didymella americana on baby lima bean (Phaseolus lunatus)." Canadian Journal of Plant Pathology. 38 (3), pp. 389-394. https://doi.org/10.1080/07060661.2016.1195877

Colletotrichum siamense, C. theobromicola and C. queenslandicum, from several plant species and the identification of C. asianum in the Northern Territory, Australia

James, R. S., Ray, J., Tan, Y. P. and Shivas, R. G.. 2014. "Colletotrichum siamense, C. theobromicola and C. queenslandicum, from several plant species and the identification of C. asianum in the Northern Territory, Australia." Australasian Plant Disease Notes. 9 (1), pp. 138-138. https://doi.org/10.1007/s13314-014-0138-x

Elucidation of the taxonomy and pathological status of Pyricularia associated with banana blast in Australia

Male, Mike F., Tan, Yu Pei, Vawdrey, Lynton L. and Shivas, Roger G.. 2011. "Elucidation of the taxonomy and pathological status of Pyricularia associated with banana blast in Australia." Australasian Plant Disease Notes. 6 (1), pp. 22-25. https://doi.org/10.1007/s13314-011-0008-8

First report of shoot blight of persimmon caused by Diaporthe neotheicola in Australia

Golzar, H., Wang, C., Tan, Y. P. and Shivas, R. G.. 2012. "First report of shoot blight of persimmon caused by Diaporthe neotheicola in Australia." Australasian Plant Disease Notes. 7 (1), pp. 115-117. https://doi.org/10.1007/s13314-012-0061-y

First report of Phoma multirostrata in Australia

Golzar, H., Lanoiselet, V., Wang, C., Tan, Y. P. and Shivas, R. G.. 2015. "First report of Phoma multirostrata in Australia." Australasian Plant Disease Notes. 10 (1), pp. 8-9. https://doi.org/10.1007/s13314-015-0161-6

A new host genus and species (Afzelia xylocarpa) for Phakopsora pachyrhizi found in Thailand

Seemadua, Suneerat, Bhasabutra, Tharntip, Beasley, Dean R., Tan, Yu Pei and Shivas, Roger G.. 2012. "A new host genus and species (Afzelia xylocarpa) for Phakopsora pachyrhizi found in Thailand." Australasian Plant Disease Notes. 7 (1), pp. 125-126. https://doi.org/10.1007/s13314-012-0064-8

First record of Prospodium appendiculatum on Tecoma stans in Thailand

Bhasabutra, Tharntip, Seemadua, Suneerat and Shivas, Roger G.. 2012. "First record of Prospodium appendiculatum on Tecoma stans in Thailand." Australasian Plant Disease Notes. 7 (1), pp. 123-124. https://doi.org/10.1007/s13314-012-0063-9

Recovery, pathogenicity and molecular sequencing of Calonectria ilicicola which causes collar rot on Carica papaya in Australia

Male, M. F., Tan, Y. P., Vawdrey, L. L. and Shivas, R. G.. 2012. "Recovery, pathogenicity and molecular sequencing of Calonectria ilicicola which causes collar rot on Carica papaya in Australia." Australasian Plant Disease Notes. 7 (1), pp. 137-138. https://doi.org/10.1007/s13314-012-0068-4

Thekopsora minima causes blueberry rust in south-eastern Queensland and northern New South Wales

McTaggart, A. R., Geering, A. D. W. and Shivas, R. G.. 2013. "Thekopsora minima causes blueberry rust in south-eastern Queensland and northern New South Wales." Australasian Plant Disease Notes. 8 (1), pp. 81-83. https://doi.org/10.1007/s13314-013-0101-2

First report of Vialaea minutella in Australia, its association with mango branch dieback and systematic placement of Vialaea in the Xylariales

McTaggart, A. R., Grice, K. R. and Shivas, R. G.. 2013. "First report of Vialaea minutella in Australia, its association with mango branch dieback and systematic placement of Vialaea in the Xylariales." Australasian Plant Disease Notes. 8 (1), pp. 63-66. https://doi.org/10.1007/s13314-013-0096-8

First report of Masseeëlla capparis in Australia

Liberato, J. R., McTaggart, A. R. and Shivas, R. G.. 2014. "First report of Masseeëlla capparis in Australia." Australasian Plant Disease Notes. 9 (1), pp. 121-125. https://doi.org/10.1007/s13314-013-0121-y

A co-evolutionary relationship exists between Endoraecium (Pucciniales) and its acacia hosts in Australia

McTaggart, A. R., Doungsa-Ard, C., Geering, A. D. W., Shivas, R. G. and Aime, M. C.. 2015. "A co-evolutionary relationship exists between Endoraecium (Pucciniales) and its acacia hosts in Australia." Persoonia. 35, pp. 50-62. https://doi.org/10.3767/003158515X687588

Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii

Vaghefi, Niloofar, Pethybridge, Sarah J., Shivas, Roger G. and Nelson, Scot C.. 2016. "Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii." Australasian Plant Disease Notes. 11 (1), pp. 35-37. https://doi.org/10.1007/s13314-016-0223-4

Plasmopara sphagneticolae sp. nov. (Peronosporales) on Sphagneticola (Asteraceae) in Australia

McTaggart, Alistair R., Shuey, Louise S., McKenna, Stephen G., Davis, Richard I. and Shivas, Roger G.. 2015. "Plasmopara sphagneticolae sp. nov. (Peronosporales) on Sphagneticola (Asteraceae) in Australia." Australasian Plant Pathology. 44 (1), pp. 81-85. https://doi.org/10.1007/s13313-014-0323-6

Fungi associated with foliar diseases of wild and cultivated rice (Oryza spp.) in northern Queensland

Khemmuk, Wanporn, Henry, Robert J., Geering, Andrew D. W. and Shivas, Roger G.. 2016. "Fungi associated with foliar diseases of wild and cultivated rice (Oryza spp.) in northern Queensland." Australasian Plant Pathology. 45 (3), pp. 297-308. https://doi.org/10.1007/s13313-016-0418-3

Review of Fusarium species isolated in association with mango malformation in Australia

Liew, E. C. Y., Laurence, M. H., Pearce, C. A., Shivas, R. G., Johnson, G. I., Tan, Y. P., Edwards, J., Perry, S., Cooke, A. W. and Summerell, B. A.. 2016. "Review of Fusarium species isolated in association with mango malformation in Australia." Australasian Plant Pathology. 45 (6), pp. 547-559. https://doi.org/10.1007/s13313-016-0454-z

Detection of Fusarium oxysporum f. sp. cubense tropical race 4 strain in northern Queensland

O'Neill, W. T., Pattemore, J. A., Perry, S., Beasley, D. R., Tan, Y. P., Smyth, A. L., Goosem, C. H., Thomson, K. M., Hobbs, R. L., Shivas, R. G., Henderson, J., O'Dwyer, C., Grice, K. R. E., Trevorrow, P., Pathania, N. and Vawdrey, L. L.. 2016. "Detection of Fusarium oxysporum f. sp. cubense tropical race 4 strain in northern Queensland." Australasian Plant Disease Notes. 11 (33), pp. 33-35. https://doi.org/10.1007/s13314-016-0218-1

Uromycladium falcatarium sp. nov., the cause of gall rust on Paraserianthes falcataria in south-east Asia

Doungsa-ard, Chanintorn, McTaggart, Alistair R., Geering, Andrew D. W., Dalisay, Teresita U., Ray, Jane and Shivas, Roger G.. 2015. "Uromycladium falcatarium sp. nov., the cause of gall rust on Paraserianthes falcataria in south-east Asia." Australasian Plant Pathology. 44 (1), pp. 25-30. https://doi.org/10.1007/s13313-014-0301-z

Towards a universal barcode of oomycetes - a comparison of the cox1 and cox2 loci

Choi, Young Joon, Kruse, Julia, Nam, Bora, Nigrelli, Lisa, Telle, Sabine, Thines, Marco, Ploch, Sebastian, Beakes, Gordon, Glockling, Sally, Shin, Hyeon Dong, Shivas, Roger G. and Voglmayr, Hermann. 2015. "Towards a universal barcode of oomycetes - a comparison of the cox1 and cox2 loci." Molecular Ecology Resources. 15 (6), pp. 1275-1288. https://doi.org/10.1111/1755-0998.12398

Identification of rust fungi (Pucciniales) on species of Allium in Australia

McTaggart, Alistair R., Shivas, Roger G., Doungsa-ard, Chanintorn, Weese, Terri L., Beasley, Dean R., Hall, Barbara H., Metcalf, Dean A. and Geering, Andrew D. W.. 2016. "Identification of rust fungi (Pucciniales) on species of Allium in Australia." Australasian Plant Pathology. 45 (6), pp. 581-592. https://doi.org/10.1007/s13313-016-0445-0

First report of Hemileia wrightiae on Wrightia spp. in Australia

Liberato, J. R. and Shivas, R. G.. 2011. "First report of Hemileia wrightiae on Wrightia spp. in Australia." Australasian Plant Disease Notes. 6 (1), pp. 80-83. https://doi.org/10.1007/s13314-011-0028-4

Ramichloridium spp. on Musa in northern Queensland: introducing Ramichloridium ducassei sp. nov. on leaf streaks of Ducasse banana

Shivas, R. G., Grice, K. R. E. and Young, A. J.. 2011. "Ramichloridium spp. on Musa in northern Queensland: introducing Ramichloridium ducassei sp. nov. on leaf streaks of Ducasse banana." Australasian Plant Pathology. 40 (1), pp. 61-65. https://doi.org/10.1007/s13313-010-0014-x

Green and brown bridges between weeds and crops reveal novel Diaporthe species in Australia

Thompson, S. M., Tan, Y. P., Shivas, R. G., Neate, S. M., Morin, L., Bissett, A. and Aitken, E. A. B.. 2015. "Green and brown bridges between weeds and crops reveal novel Diaporthe species in Australia." Persoonia. 35, pp. 39-49. https://doi.org/10.3767/003158515X687506

Fungal Planet description sheets: 281-319

Crous, P., Wingfield, M., Schumacher, R., Summerell, B., Giraldo, A., Gene, J., Guarro, J., Wanasinghe, D., Hyde, K., Camporesi, E., Jones, E., Thambugala, K., Malysheva, E., Malysheva, V., Acharya, K., Alvarez, J., Alvarado, P., Assefa, A., Barnes, C. W., ..., Groenewald, J.. 2014. "Fungal Planet description sheets: 281-319." Persoonia. 33, pp. 212-292. https://doi.org/10.3767/003158514X685680

Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species

Thompson, S. M., Tan, Y. P., Young, A. J., Neate, S. M., Aitken, E. A. B. and Shivas, R. G.. 2011. "Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species." Persoonia. 27, pp. 80-89. https://doi.org/10.3767/003158511X617110

First report of the smut fungus Ustanciosporium appendiculatum in Australia

Shivas, R. G., McTaggart, A. R., Ryley, M. J., Scharaschkin, T. and Gambley, C. F.. 2010. "First report of the smut fungus Ustanciosporium appendiculatum in Australia." Australasian Plant Disease Notes. 5 (1), pp. 17-18. https://doi.org/10.1071/DN10007

Molecular phylogenetic analysis of Peronosclerospora (Oomycetes) reveals cryptic species and genetically distinct species parasitic to maize

Telle, Sabine, Shivas, Roger G., Ryley, Malcolm J. and Thines, Marco. 2011. "Molecular phylogenetic analysis of Peronosclerospora (Oomycetes) reveals cryptic species and genetically distinct species parasitic to maize." European Journal of Plant Pathology. 130 (4), pp. 521-528. https://doi.org/10.1007/s10658-011-9772-8

Peronosclerospora australiensis sp. nov. and Peronosclerospora sargae sp. nov., two newly recognised downy mildews in northern Australia, and their biosecurity implications

Shivas, R. G., Ryley, M. J ., Telle, S., Liberato, J. R. and Thines, M.. 2012. "Peronosclerospora australiensis sp. nov. and Peronosclerospora sargae sp. nov., two newly recognised downy mildews in northern Australia, and their biosecurity implications." Australasian Plant Pathology. 41 (2), pp. 125-130. https://doi.org/10.1007/s13313-011-0097-z

First report of the powdery mildew Erysiphe diffusa on soybean in Australia

McTaggart, A. R., Ryley, M. J. and Shivas, R. G.. 2012. "First report of the powdery mildew Erysiphe diffusa on soybean in Australia." Australasian Plant Disease Notes. 7 (1), pp. 127-129. https://doi.org/10.1007/s13314-012-0065-7

Indigenous fungi as pathogens of crops: some examples from Australia

Ryley, Malcolm and Shivas, Roger. 2013. "Indigenous fungi as pathogens of crops: some examples from Australia." Asian Mycological Congress 2013 and 13th International Marine and Freshwater Mycology Symposium (AMC 2013). Beijing, China 19 - 23 Aug 2103 Beijing, China.

Xanthones from a microfungus of the genus Xylaria

Healy, Peter C., Hocking, Ailsa, Tran-Dinh, Nai, Pitt, John I., Shivas, Roger G., Mitchell, Jennifer K., Kotiw, Mike and Davis, Rohan A.. 2004. "Xanthones from a microfungus of the genus Xylaria." Phytochemistry: the international journal of plant chemistry, plant biochemistry and molecular biology. 65 (16), pp. 2373-2378. https://doi.org/10.1016/j.phytochem.2004.07.019

Phomoxins B and C: polyketides from an endophytic fungus of the genus eupenicillium

Davis, Rohan A., Andjic, Vesna, Kotiw, Michael and Shivas, Roger G.. 2005. "Phomoxins B and C: polyketides from an endophytic fungus of the genus eupenicillium." Phytochemistry: the international journal of plant chemistry, plant biochemistry and molecular biology. 66 (23), pp. 2771-2775. https://doi.org/10.1016/j.phytochem.2005.09.004

A case for re-inventory of Australia's plant pathogens

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