PREDICTA®B update and new tests for 2018

Article

McKay, Alan, Simpfendorfer, Steven, Gupta, Vadakattu, Bithell, Sean, Moore, Kevin, Daniel, Richard, Percy, Cassy, White, Jo, Sparks, Adam and Hollaway, Grant. 2018. "PREDICTA®B update and new tests for 2018." GRDC Update Papers.
Article Title

PREDICTA®B update and new tests for 2018

Article CategoryArticle
AuthorsMcKay, Alan (Author), Simpfendorfer, Steven (Author), Gupta, Vadakattu (Author), Bithell, Sean (Author), Moore, Kevin (Author), Daniel, Richard (Author), Percy, Cassy (Author), White, Jo (Author), Sparks, Adam (Author) and Hollaway, Grant (Author)
Journal TitleGRDC Update Papers
Year2018
Place of PublicationAustralia
Web Address (URL)https://grdc.com.au/resources-and-publications/grdc-update-papers/tab-content/grdc-update-papers/2018/03/predictab-update-and-new-tests-for-2018
Abstract

- Soil-borne pathogens most likely to pose the greatest risk to cereal crops in the northern region during 2018 include crown rot, common root rot and root lesion nematodes.
- PREDICTA®B has added new tests for ascochyta blight and phytophthora root rot of chickpeas, yellow leaf spot and white grain disorder of wheat, fusarium stalk rot of sorghum, charcoal rot of summer crops and arbuscular mycorrhizal fungi (AMF).
- Follow sampling recommendations in the manual V10 (Broadacre Soilborne disease manual), including the additional of pieces of stubble to improve the detection of stubble-borne pathogens.
- Frequently more than one soil-borne disease exists within a paddock with the interaction between pathogens (e.g. Pratylenchus thornei and crown rot) exacerbating losses. PREDICTA B is assisting pathologists to understand these interactions to advise growers on management options to limit the impact of these disease complexes.

ANZSRC Field of Research 2020310805. Plant pathology
300409. Crop and pasture protection (incl. pests, diseases and weeds)
Public Notes

No evidence of copyright restrictions preventing deposit.

Byline AffiliationsDepartment of Primary Industries and Regions, South Australia
Department of Primary Industries, New South Wales
Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australia
Northern Grower Alliance, Australia
Centre for Crop Health
Agriculture Victoria
Institution of OriginUniversity of Southern Queensland
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Sparks, Adam and Kelly, Lisa. 2017. "Mungbean powdery mildew management with fungicide [Online community]." GRDC Communities. 15 December 2017.
Open Data, Materials and Code Introduction
Gacenga, Francis, Sparks, Adam and Del Ponte, Emerson M.. 2019. "Open Data, Materials and Code Introduction." Panczack, R., Gacenga, F., Sparks, A., King, R., Baker, P., Li, L., Schnyder, N., Lim, C. and Vickers-Jones, R. (ed.) Re:Produce Workshop - A Theo Murphy Initiative. Brisbane, Australia 10 - 11 Dec 2019 Australia. https://doi.org/10.17605/OSF.IO/XQ7C5
Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2018. "Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]." eXtension AUS Field Crop Diseases. 19 March 2018, pp. 1-8.
Spatial and temporal patterns of rice production and productivity
Kannan, Elumalai, Paliwal, Ambica and Sparks, Adam. 2017. "Spatial and temporal patterns of rice production and productivity." Mohanty, Samarendu, Chengappa, P. G., Mruthyunjaya, Mruthyunjaya, Ladha, J. K., Baruah, Sampriti, Kannan, Elumalai and Manjuataha, A. V. (ed.) The future rice strategy for India. London, United Kingdom. Elsevier. pp. 39-68
Diagnosing plant diseases: what do we ask and why do we ask for it?
Adorada, Dante L., Sigel, Luise, Kelly, Lisa and Sparks, Adam H.. 2017. "Diagnosing plant diseases: what do we ask and why do we ask for it?" GRDC Extension AUS. 4 (8).
nasapower: a NASA POWER global meteorology, surface solar energy and climatology data client for R [Journal of Open Source Software, vol. 3, no. 30, 1035
Sparks, Adam H.. 2018. nasapower: a NASA POWER global meteorology, surface solar energy and climatology data client for R [Journal of Open Source Software, vol. 3, no. 30, 1035. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.01035
Mungbean and sorghum disease update
Kelly, Lisa, White, Jo, Sharman, Murray, Brier, Hugh, Williams, Liz, Grams, Raechelle, Weir, Duncan, McKay, Alan and Sparks, Adam H.. 2017. "Mungbean and sorghum disease update." GRDC Grains Research Update (Jondaryan) (2017). Jondaryan, Australia 19 Jul 2017 Hornsby, NW, Australia.
Crop health and its global impacts on the components of food security
Savary, S., Bregaglio, S., Willocquet, L., Gustafson, D., Mason D'Croz, D., Sparks, A., Castilla, N., Djurle, A., Allinne, C., Sharma, Mamta, Rossi, V., Amorim, L., Bergamin, A., Yuen, J., Esker, P., McRoberts, Neil, Avelino, J., Duveiller, E., Koo, J. and Garrett, K.. 2017. "Crop health and its global impacts on the components of food security." Food Security: the science, sociology and economics of food production and access to food. 9 (2), pp. 311-327. https://doi.org/10.1007/s12571-017-0659-1
Plant pathogens as indicators of climate change
Garrett, K. A., Nita, M., De Wolf, E. D., Esker, P. D., Gomez-Montano, L. and Sparks, A. H.. 2016. "Plant pathogens as indicators of climate change." Letcher, Trevor M. (ed.) Climate change: observed impacts on planet Earth. Netherlands. Elsevier. pp. 325-338
Is rice improvement still making a difference? Assessing the economic, poverty and food security impacts of rice varieties released from 1989 to 2009 in Bangladesh, Indonesia and the Philippines
Raitzer, D. A., Sparks, A. H., Huelgas, Z., Maligalig, R., Balangue, Z., Launio, C., Daradjat, A. and Ahmed, H. U.. 2015. Is rice improvement still making a difference? Assessing the economic, poverty and food security impacts of rice varieties released from 1989 to 2009 in Bangladesh, Indonesia and the Philippines. Rome, Italy. CGIAR Independent Science and Partnership Council.
DAQ00186 2015 annual report
Sparks, Adam H., Kelly, Lisa, Sharman, Murray, Thompson, Sue, Wenham, Kylie and White, Jo. 2016. DAQ00186 2015 annual report. Australia. Grains Research and Development Corporation.
An introduction to key distributions and models in epidemiology using R
Garrett, Karen A., Esker, Paul D. and Sparks, Adam H.. 2015. "An introduction to key distributions and models in epidemiology using R." Stevenson, Katherine L. and Jeger, Michael J. (ed.) Exercises in plant disease epidemiology. St. Paul, Minnesota. American Phytopathological Society. pp. 3-14
bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]
Sparks, Adam H., Padgham, Mark, Parsonage, Hugh and Pembleton, Keith. 2017. bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.00411
getCRUCLdata: use and explore CRU CL v. 2.0 climatology elements in R
Sparks, Adam H.. 2017. getCRUCLdata: use and explore CRU CL v. 2.0 climatology elements in R. https://cran.r-project.org/package=getCRUCLdata. Comprehensive R Archive Network. https://doi.org/10.21105/joss.00230
GSODR: Global Summary Daily Weather Data in R
Sparks, Adam H., Hengl, Tomislav and Nelson, Andrew. 2017. GSODR: Global Summary Daily Weather Data in R. https://cran.r-project.org/package=GSODR. Comprehensive R Archive Network. https://doi.org/10.21105/joss.00177
Spatial modelling of rice yield losses in Tanzania due to bacterial leaf blight and leaf blast in a changing climate
Duku, Confidence, Sparks, Adam H. and Zwart, Sander J.. 2016. "Spatial modelling of rice yield losses in Tanzania due to bacterial leaf blight and leaf blast in a changing climate." Climatic Change: an interdisciplinary, international journal devoted to the description, causes and implications of climatic change. 135 (3-4), pp. 569-583. https://doi.org/10.1007/s10584-015-1580-2
Decision tools for bacterial blight resistance gene deployment in rice-based agricultural ecosystems
Dossa, Gerbert S., Sparks, Adam, Vera Cruz, Cassiana and Oliva, Ricardo. 2015. "Decision tools for bacterial blight resistance gene deployment in rice-based agricultural ecosystems." Frontiers in Plant Science. 6, pp. 1-5. https://doi.org/10.3389/fpls.2015.00305
Climate change may have limited effect on global risk of potato late blight
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert J. and Garrett, Karen A.. 2014. "Climate change may have limited effect on global risk of potato late blight." Global Change Biology. 20 (12), pp. 3621-3631. https://doi.org/10.1111/gcb.12587
A review on crop losses, epidemiology and disease management of rice brown spot to identify research priorities and knowledge gaps
Barnwal, M. K., Kotasthane, A., Magculia, N., Mukherjee, P. K., Savary, S., Sharma, A. K., Singh, H. B., Singh, U. S., Sparks, A. H., Variar, M. and Zaidi, N.. 2013. "A review on crop losses, epidemiology and disease management of rice brown spot to identify research priorities and knowledge gaps." European Journal of Plant Pathology. 136 (3), pp. 443-457. https://doi.org/10.1007/s10658-013-0195-6
Taking transgenic rice drought screening to the field
Gaudin, Amelie C. M., Henry, Amelia, Sparks, Adam H. and Slamet-Loedin, Inez H.. 2013. "Taking transgenic rice drought screening to the field." Journal of Experimental Botany. 64 (1), pp. 109-117. https://doi.org/10.1093/jxb/ers313
An economic assessment of the impact of mango pulp weevil on the agricultural sector of Palawan, Philippines
McKinley, Justin D., Sparks, Adam H., Pede, Valerien O. and Duff, Bart. 2012. "An economic assessment of the impact of mango pulp weevil on the agricultural sector of Palawan, Philippines." The Philippine Agricultural Scientist: an international journal of tropical agriculture and related sciences. 95 (3), pp. 286-292.
Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease
Garrett, K. A., Forbes, G. A., Savary, S., Skelsey, P., Sparks, A. H., Valdivia, C., van Bruggen, A. H. C., Willocquet, L., Djurle, A., Duveiller, E., Eckersten, H., Pande, S., Vera Cruz, C. and Yuen, J.. 2011. "Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease." Plant Pathology. 60 (1), pp. 15-30. https://doi.org/10.1111/j.1365-3059.2010.02409.x
International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world
Savary, Serge, Nelson, Andrew, Sparks, Adam H, Willocquet, Laetitia, Duveiller, Etienne, Mahaku, George, Forbes, Greg, Garrett, Karen A., Hodson, David, Padgham, Jon, Pande, Suresh, Sharma, Mamta, Yuen, Jonathan and Djurle, Annika. 2011. "International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world." Plant Disease: an international journal of applied plant pathology. 95 (10), pp. 1204-1216. https://doi.org/10.1094/PDIS-04-11-0316
A metamodeling framework for extending the application domain of process-based ecological models
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert and Garrett, Karen A.. 2011. "A metamodeling framework for extending the application domain of process-based ecological models." Ecosphere. 2 (8). https://doi.org/10.1890/ES11-00128.1
Root lesion nematode and crown rot - double trouble!
Daniel, Richard, Simpfendorfer, Steven, McMullen, Guy and Thompson, John. 2011. "Root lesion nematode and crown rot - double trouble!" 2011 GRDC Grains Research Update, Miles. Miles, Australia 01 Mar 2011 Canberra, Australia.
Highly heritable resistance to root-lesion nematode (Pratylenchus thornei) in Australian chickpea germplasm observed using an optimised glasshouse method and multi-environment trial analysis
Rodda, M. S., Hobson, K. B., Forknall, C. R., Daniel, R. P., Fanning, J. P., Pounsett, D. D., Simpfendorfer, S., Moore, K. J., Owen, K. J., Sheedy, J. G., Thompson, J. P., Hollaway, G. J. and Slater, A. T.. 2016. "Highly heritable resistance to root-lesion nematode (Pratylenchus thornei) in Australian chickpea germplasm observed using an optimised glasshouse method and multi-environment trial analysis." Australasian Plant Pathology. 45 (3), pp. 309-319. https://doi.org/10.1007/s13313-016-0409-4
Germplasm enhancement for resistance to Pyrenophra tritici-repentis in wheat
Shankar, Manisha, Mather, Diane, Jorgensen, Dorthe, Golzar, Hossein, Chalmers, Ken, Hollaway, Grant, McLean, Mark, Neate, Stephen and Loughman, Rob. 2015. "Germplasm enhancement for resistance to Pyrenophra tritici-repentis in wheat." Ogihara, Yasunari, Takumi, Shigeo and Handa, Hirokazu (ed.) 12th International Wheat Genetics Symposium (IWGS 2013). Pacifico Yokohama, Japan 08 - 14 Sep 2013 Japan. https://doi.org/10.1007/978-4-431-55675-6_21
Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources
Martin, A., Bovill, W. D., Percy, C. D., Herde, D., Fletcher, S., Kelly, A., Neate, S. M. and Sutherland, M. W.. 2015. "Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources." Theoretical and Applied Genetics: international journal of plant breeding research. 128 (3), pp. 377-385. https://doi.org/10.1007/s00122-014-2437-1
Validation of a new spot form of net blotch differential set and evidence for hybridisation between the spot and net forms of net blotch in Australia
McLean, M. S., Martin, A., Gupta, S., Sutherland, M. W., Hollaway, G. J. and Platz, G. J.. 2014. "Validation of a new spot form of net blotch differential set and evidence for hybridisation between the spot and net forms of net blotch in Australia." Australasian Plant Pathology. 43 (3), pp. 223-233. https://doi.org/10.1007/s13313-014-0285-8
Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures
Sheedy, J. G., McKay, A. C., Lewis, J., Vanstone, V. A., Fletcher, S., Kelly, A. and Thompson, J. P.. 2015. "Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures." Australasian Plant Pathology. 44 (2), pp. 175-182. https://doi.org/10.1007/s13313-014-0333-4
Crown rot of winter cereals: integrating molecular studies and germplasm improvement
Sutherland, Mark W., Bovill, W. D., Eberhard, F. S., Lehmensiek, A., Herde, D. and Simpfendorfer, S.. 2009. "Crown rot of winter cereals: integrating molecular studies and germplasm improvement." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.
Symptom development and pathogen spread in wheat genotypes with varying levels of crown rot resistance
Malligan, C. D., Sutherland, M. W. and Wildermuth, G. B.. 2009. "Symptom development and pathogen spread in wheat genotypes with varying levels of crown rot resistance." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.
Fusarium graminearum and Fusarium pseudograminearum caused the 2010 head blight epidemics in Australia
Obanor, F., Neate, S., Simpfendorfer, S., Sabburg, R., Wilson, P. and Chakraborty, S.. 2013. "Fusarium graminearum and Fusarium pseudograminearum caused the 2010 head blight epidemics in Australia ." Plant Pathology. 62 (1), pp. 79-91. https://doi.org/10.1111/j.1365-3059.2012.02615.x
Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing
Penton, C. Ryan, Gupta, V. V. S. R., Tiedje, James M., Neate, Stephen M., Ophel-Keller, Kathy, Gillings, Michael, Harvey, Paul, Pham, Amanda and Roget, David K.. 2014. "Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing." PLoS One. 9 (4), pp. 1-12. https://doi.org/10.1371/journal.pone.0093893
Chickpeas! Varietal performance, wet feet and root rot, virus and salinity effects in 2012, Ascochyta management, seed quality, issues in central Queensland and effects of desiccating too early with glyphosate on seed germination
Moore, Kevin, Ryley, Mal and Sharman, Murray. 2013. "Chickpeas! Varietal performance, wet feet and root rot, virus and salinity effects in 2012, Ascochyta management, seed quality, issues in central Queensland and effects of desiccating too early with glyphosate on seed germination." 2013 GRDC Grains Research Update, Northern Region. Goondiwindi, Australia 05 - 06 Mar 2013 Canberra, Australia.
Response of chickpea genotype to Phytophthora root rot, PRR (Phytophthora medicaginis)
Moore, Kevin, Ryley, Malcolm, Hobson, Kristy, Harden, Steve, Martin, William, King, Kris, Nash, Paul and Chiplin, Gail. 2013. "Response of chickpea genotype to Phytophthora root rot, PRR (Phytophthora medicaginis)." Pulse Breeding Australia Inaugural Conference (PBA 2013): Expanding Horizons. Adelaide, Australia 20 - 23 Oct 2013
Use of SSR markers to determine the genetic purity of a popular Australian wheat variety and consequences for stripe rust reactions
Simpfendorfer, S., Martin, A. and Sutherland, M. W.. 2013. "Use of SSR markers to determine the genetic purity of a popular Australian wheat variety and consequences for stripe rust reactions." Seed Science and Technology. 41 (1), pp. 98-106. https://doi.org/10.15258/sst.2013.41.1.09
Introgression of hexaploid sources of crown rot resistance into durum wheat
Martin, A., Simpfendorfer, S., Hare, R. A. and Sutherland, M. W.. 2013. "Introgression of hexaploid sources of crown rot resistance into durum wheat." Euphytica: international journal on plant breeding. 192 (3), pp. 463-470. https://doi.org/10.1007/s10681-013-0890-6
Symptom development proceeds at different rates in susceptible and partially resistant cereal seedling infected with Fusarium pseudograminearum
Percy, C. D., Wildermuth, G. B. and Sutherland, M. W.. 2012. "Symptom development proceeds at different rates in susceptible and partially resistant cereal seedling infected with Fusarium pseudograminearum." Australasian Plant Pathology. 41 (6), pp. 621-631. https://doi.org/10.1007/s13313-012-0146-2
Retention of D genome chromosomes in pentaploid wheat crosses
Martin, A., Simpfendorfer, S., Hare, R. A., Eberhard, F. S. and Sutherland, M. W.. 2011. "Retention of D genome chromosomes in pentaploid wheat crosses." Heredity. 107 (4), pp. 315-319. https://doi.org/10.1038/hdy.2011.17
Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population
Collard, B. C. Y., Grams, R. A., Bovill, W. D., Percy, C. D., Jolley, R., Lehmensiek, A., Wildermuth, G. B. and Sutherland, M. W.. 2005. "Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population." Plant Breeding. 124 (6), pp. 532-537. https://doi.org/10.1111/j.1439-0523.2005.01163.x
Infection of wheat tissues by fusarium pseudograminearum
Knight, N. L., Percy, C., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2008. "Infection of wheat tissues by fusarium pseudograminearum." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance
Nicol, J. M., Sahin, E., Wallwork, H., Chakraborty, S., Lu, M., O'Brien, L., Sutherland, M., Horne, M., Simpfendorfer, S., Herde, D., Ogbonnaya, F., Duvellier, E., Bolat, N., Yahyaoui, A., Buerstmayr, H., Lewis, J., Crossa, J., Singh, A. K., Bishnoi, S. P., ..., Gargouri, S.. 2008. "Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH
Eberhard, Friederike S., Zhang, Peng, Lehmensiek, Anke, Hare, Ray A., Simpfendorfer, Steven and Sutherland, Mark W.. 2010. "Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH." Crop and Pasture Science. 61 (8), pp. 619-624. https://doi.org/10.1071/CP10131
Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH
Eberhard, F. S., Zhang, P., Lehmensiek, A., Sutherland, M. W., Hare, R. and Simpfendorfer, S.. 2008. "Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH." Appels, Rudi, Eastwood, Russell, Lagudah, Evans, Mackay, Michael, McIntyre, Lynne, Sharp, Peter and Langridge, Peter (ed.) 11th International Wheat Genetics Sympoium (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats
Sutherland, Mark, Bovill, W. D., Horne, M., Lehmensiek, A., Eberhard, F., Percy, C., Wildermuth, G. B., Simpfendorfer, S. and Hare, R.. 2008. "The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats." 10th International Fusarium and Fusarium Genomics Workshop 2008. Sardinia, Italy 30 Aug - 02 Sep 2008 Sardinia,Italy.
Effectiveness of partial resistance sources in hexaploid wheats against fusarium pseudograminearum isolates
Percy, C. D., Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Effectiveness of partial resistance sources in hexaploid wheats against fusarium pseudograminearum isolates." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong, Australia.