A Quantitative Trait Locus with a Major Effect on Root-Lesion Nematode Resistance in Barley

Article

Mather, Diane, Vassos, Elysia, Sheedy, Jason, Guo, Wenbin and McKay, Alan. 2024. "A Quantitative Trait Locus with a Major Effect on Root-Lesion Nematode Resistance in Barley ." Plants. 13 (12). https://doi.org/10.3390/plants13121663
Article Title

A Quantitative Trait Locus with a Major Effect on Root-Lesion Nematode Resistance in Barley

ERA Journal ID213962
Article CategoryArticle
AuthorsMather, Diane, Vassos, Elysia, Sheedy, Jason, Guo, Wenbin and McKay, Alan
EditorsZhou, G.
Journal TitlePlants
Journal Citation13 (12)
Article Number1663
Number of Pages18
Year2024
PublisherMDPI AG
Place of PublicationSwitzerland
ISSN2223-7747
Digital Object Identifier (DOI)https://doi.org/10.3390/plants13121663
Web Address (URL)https://www.mdpi.com/2223-7747/13/12/1663
Abstract

Although the root-lesion nematode Pratylenchus thornei is known to affect barley (Hordeum vulgare L.), there have been no reports on the genetic control of P. thornei resistance in barley. In this research, P. thornei resistance was assessed for a panel of 46 barley mapping parents and for two mapping populations (Arapiles/Franklin and Denar/Baudin). With both populations, a highly significant quantitative trait locus (QTL) was mapped at the same position on the long arm of chromosome 7H. Single-nucleotide polymorphisms (SNPs) in this region were anchored to an RGT Planet pan-genome assembly and assayed on the mapping parents and other barley varieties. The results indicate that Arapiles, Denar, RGT Planet and several other varieties likely have the same resistance gene on chromosome 7H. Marker assays reported here could be used to select for P. thornei resistance in barley breeding. Analysis of existing barley pan-genomic and pan-transcriptomic data provided a list of candidate genes along with information on the expression and differential expression of some of those genes in barley root tissue. Further research is required to identify a specific barley gene that affects root-lesion nematode resistance.

Keywordsbarley; root-lesion nematode; resistance; quantitative trait locus; chromosome 7H
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020300406. Crop and pasture improvement (incl. selection and breeding)
Byline AffiliationsUniversity of Adelaide
Centre for Crop Health
James Hutton Institute, United Kingdom
South Australian Research and Development Institute, Australia
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