Centre for Crop Health


Latest research outputs

616 results found
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Non-visual common root rot disease detection using NIR spectrum and machine learning methods
Xiong, Yiyi, McCarthy, Cheryl, Humpal, Jacob and Percy, Cassandra. "Non-visual common root rot disease detection using NIR spectrum and machine learning methods." 2023 11th International Conference on Agro-Geoinformatics (Agro-Geoinformatics). Wuhan, China 25 - 28 Jul 2023 IEEE (Institute of Electrical and Electronics Engineers). https://doi.org/https://ieeexplore.ieee.org/xpl/conhome/10233256/proceeding

Paper

Soil solarisation delivers near zero levels of Fusarium pseudograminearum in cereal crown rot reference sites
Bottomley, Prue, Sutherland, Mark, Wilson, Bree, Rognoni, Bethany, Kelly, Alison and Percy, Cassandra D.. 2024. "Soil solarisation delivers near zero levels of Fusarium pseudograminearum in cereal crown rot reference sites." Crop Protection. 185. https://doi.org/10.1016/j.cropro.2024.106887

Article

NIR spectroscopy and Deep Neural Networks for early common root rot detection in wheat from multi-season trials
Xiong, Yiyi, McCarthy, Cheryl, Humpal, Jacob and Percy, Cassandra. 2024. "NIR spectroscopy and Deep Neural Networks for early common root rot detection in wheat from multi-season trials." Agronomy Journal. 116 (5), pp. 2370-2390. https://doi.org/10.1002/agj2.21648

Article

Unveiling Genetic Resistance to Crown Rot in Watkins Wheat Landrace Diversity Panel
Garg, Bharat, Rubayet, Md. Tanbir, Muthusamy, Karthikeyan, Subramaniam, Geethanjali, McDonald, Stephen, Balotf, Sadegh, Gardiner, Donald, Percy, Cassy and Periyannan, Sambasivam. 2024. "Unveiling Genetic Resistance to Crown Rot in Watkins Wheat Landrace Diversity Panel." 12th Australasian Soilborne Diseases Symposium (ASDS 2024). Kingscliff, Australia 26 - 30 Aug 2024 Australia.

Poster

Pathogenicity of Bipolaris sorokiniana isolates on wheat and barley genotypes for common root rot
Dendi, Akhila, Percy, Cassandra, Martin, Anke and McDonald, Stephen. 2024. "Pathogenicity of Bipolaris sorokiniana isolates on wheat and barley genotypes for common root rot." 12th Australasian Soilborne Diseases Symposium (ASDS 2024). Kingscliff, Australia 26 - 30 Aug 2024 Australia.

Poster

Impact of common root rot in Queensland winter cereals
Percy, Cassandra and McDonald, Stephen. 2024. "Impact of common root rot in Queensland winter cereals." 12th Australasian Soilborne Diseases Symposium (ASDS 2024). Kingscliff, Australia 26 - 30 Aug 2024 Australia.

Presentation

Fungal Planet description sheets: Marasmius pseudoelegans
Guard, F. E, Lebel, T. and Dearnaley, J.. 2024. "Fungal Planet description sheets: Marasmius pseudoelegans." Fungal Systematics and Evolution. 13 (1), pp. 290-292. https://doi.org/10.3114/fuse.2024.13.11

Notes or commentaries

Glycine tabacina, native to Australia, is an alternate host of Erysiphe diffusa causing powdery mildew on soybean
Ahmad, Aftab, Kelly, Lisa A., Dahanayaka, Buddhika A., Dearnaley, John D. W., Vaghefi, Niloofar and Kiss, Levente. 2024. "Glycine tabacina, native to Australia, is an alternate host of Erysiphe diffusa causing powdery mildew on soybean." Plant Pathology. https://doi.org/10.1111/ppa.13971

Article

Virulence Spectra of Hungarian Pyrenophora teres f. teres Isolates Collected from Experimental Fields Show Continuous Variation without Specific Isolate x Barley Differential Interactions
Bakonyi, Jozsef, Seress, Diána, Nagy, Zoltan A., Csorba, ldikó, Cseplo, Monika, Marton, Tibor A., Martin, Anke and Meszaros, Klara. 2024. "Virulence Spectra of Hungarian Pyrenophora teres f. teres Isolates Collected from Experimental Fields Show Continuous Variation without Specific Isolate x Barley Differential Interactions." Journal of Fungi. 10 (3). https://doi.org/10.3390/jof10030184

Article

Engineering Approaches for Exosome Cargo Loading and Targeted Delivery: Biological versus Chemical Perspectives
Ahmed, Waqas, Mushtaq, Asim, Ali, Shahzad, Khan, Nawaz, Liang, Yujie and Duan, Li. 2024. "Engineering Approaches for Exosome Cargo Loading and Targeted Delivery: Biological versus Chemical Perspectives." ACS Biomaterials Science and Engineering. https://doi.org/10.1021/acsbiomaterials.4c00856

Article

Exploiting long read sequencing to detect azole fungicide resistance mutations in Pyrenophora teres using unique molecular identifiers
Zulak, Katherine G., Farfan-Caceres, Lina, Knight, Noel L. and Lopez-Ruiz, Francisco J.. 2024. "Exploiting long read sequencing to detect azole fungicide resistance mutations in Pyrenophora teres using unique molecular identifiers." Scientific Reports. 14 (1). https://doi.org/10.1038/s41598-024-56801-z

Article

Aerial spread of smut spores during peanut harvest
Paredes, Juan A., Sparks, Adam H., Monguillot, Joaquín H., Rago, Alejandro M. and Molina, Juan.P. Edwards. 2024. "Aerial spread of smut spores during peanut harvest." Tropical Plant Pathology. 49 (4), pp. 502-514. https://doi.org/10.1007/s40858-024-00645-5

Article

Detection and identification of Bogia coconut syndrome phytoplasma from seed-associated tissues and seedlings of coconut (Cocos nucifera) and betel nut (Areca catechu)
Lu, Hengyu, Wilson, Bree, Zhang, Hanfang, Woruba, Sharon B., Feng, Bowen, Johnson, Anne C., Komolong, Birte, Kuniata, Lastus, Yang, Guang and Gurr, Geof M.. 2024. "Detection and identification of Bogia coconut syndrome phytoplasma from seed-associated tissues and seedlings of coconut (Cocos nucifera) and betel nut (Areca catechu)." Scientific Reports. 14 (1). https://doi.org/10.1038/s41598-024-61916-4

Article

Development and evaluation of Fusarium wilt-resistant and high-yielding chickpea advanced breeding line, KCD 11
Laxuman, C., Naik, Yogesh Dashrath, Desai, B. K., Kenganal, Mallikarjun, Patil, Bharat, Reddy, B. S., Patil, D. H., Chakurte, Sidramappa, Kuchanur, P. H., Kumar K, Shiva, Gaddi, Ashok Kumar, Yogesh, L. N., Nidagundi, Jayaprakash, Dodamani, B. M., Sunkad, Gururaj, Thudi, Mahendar and Varshney, Rajeev K.. 2024. "Development and evaluation of Fusarium wilt-resistant and high-yielding chickpea advanced breeding line, KCD 11." The Plant Genome. 17 (2). https://doi.org/10.1002/tpg2.20460

Article

Revisiting the intron hypothesis of QoI resistance in Phyllosticta ampelicida, the causal agent of grape black rot, and other Phyllosticta species
Horvath, Áron N., Molnar, Orsolya, Nemeth, Márk Z., Pintye, Alexandra, Dankó, Tamás, Spitzmüller, Zsolt, Vaczy, Zsuzsanna, Vaczy, Kálmán Z., Onesti, Giovanni, Reis, Pedro, Rego, Cecilia, Bereczky, Zsolt, Kiss, Levente and Kovacs, Gábor M.. 2024. "Revisiting the intron hypothesis of QoI resistance in Phyllosticta ampelicida, the causal agent of grape black rot, and other Phyllosticta species." Plant Pathology. 73 (6), pp. 1491-1505. https://doi.org/10.1111/ppa.13912

Article

Meta-QTL analysis reveals the important genomics regions for biotic stresses, nutritional quality and yield related traits in pearl millet
Gupta, Shreshth, Rangari, Sagar Krushnaji, Sahu, Aakash, Naik, Yogesh Dashrath, Satayavathi, C. Tara, Punnuri, Somashekhar and Thudi, Mahendar. 2024. "Meta-QTL analysis reveals the important genomics regions for biotic stresses, nutritional quality and yield related traits in pearl millet." CABI Agriculture and Bioscience. 5 (1). https://doi.org/10.1186/s43170-024-00230-5

Article

Community assembly of root-colonizing arbuscular mycorrhizal fungi: beyond carbon and into defence?
Frew, Adam, Weinberger, Natascha, Powell, Jeff R., Watts-Williams, Stephanie J. and Aguilar-Trigueros, Carlos A.. 2024. "Community assembly of root-colonizing arbuscular mycorrhizal fungi: beyond carbon and into defence?" The ISME Journal: multidisciplinary journal of microbial ecology. 18 (1). https://doi.org/10.1093/ismejo/wrae007

Article

Unleashing Bacillus species as versatile antagonists: Harnessing the biocontrol potentials of the plant growth-promoting rhizobacteria to combat Macrophomina phaseolina infection in Gloriosa superba
Dhanabalan, Shanmugapriya, Muthusamy, Karthikeyan, Iruthayasamy, Johnson, Kumaresan, Parthiban V., Ravikumar, Caroline, Kandasamy, Rajamani, Natesan, Senthil and Periyannan, Sambasivam. 2024. "Unleashing Bacillus species as versatile antagonists: Harnessing the biocontrol potentials of the plant growth-promoting rhizobacteria to combat Macrophomina phaseolina infection in Gloriosa superba." Microbiological Research. 283. https://doi.org/10.1016/j.micres.2024.127678

Article

Geministatins: new depside antibiotics from the fungus Austroacremonium gemini
Crombie, Andrew, Kalaitzis, John A., Chen, Rachel, Vuong, Daniel, Lacey, Alastair E., Lacey, Ernest, Shivas, Roger G., Tan, Yu Pei, Sbaraini, Nicolau, Chooi, Yit-Heng and Piggott, Andrew M.. 2024. "Geministatins: new depside antibiotics from the fungus Austroacremonium gemini." The Journal of Antibiotics. https://doi.org/10.1038/s41429-024-00755-x

Article

Integrative approaches in modern agriculture: IoT, ML and AI for disease forecasting amidst climate change
Delfani, Payam, Thuraga, Vishnukiran, Banerjee, Bikram and Chawade, Aakash. 2024. "Integrative approaches in modern agriculture: IoT, ML and AI for disease forecasting amidst climate change." Precision Agriculture. https://doi.org/10.1007/s11119-024-10164-7

Article

A Quantitative Trait Locus with a Major Effect on Root-Lesion Nematode Resistance in Barley
Mather, Diane, Vassos, Elysia, Sheedy, Jason, Guo, Wenbin and McKay, Alan. 2024. "A Quantitative Trait Locus with a Major Effect on Root-Lesion Nematode Resistance in Barley ." Plants. 13 (12). https://doi.org/10.3390/plants13121663

Article

Transcriptomics is essential but not sufficient to unravel complex plant–pathogen interactions
Balotf, Sadegh, Wilson, Richard and Wilson, Calum. 2024. "Transcriptomics is essential but not sufficient to unravel complex plant–pathogen interactions." Plant Cell Reports. 43. https://doi.org/10.1007/s00299-024-03248-1

Article

Fusarium pseudograminearum infected wheat lines vary in disease severity and gas exchange response under different watering regimes
Percy, Cassandra D., Abdulsada, Rian R., Thompson, Michael, Peitton, Lucas and Kelly, Alison. 2024. "Fusarium pseudograminearum infected wheat lines vary in disease severity and gas exchange response under different watering regimes." Plant Pathology. 73 (3), pp. 602-612. https://doi.org/10.1111/ppa.13843

Article

Global Diversity and Distribution of Rhizosphere and Root-Associated Fungi in Coastal Wetlands: A Systematic Review
Lumibao, Candice Y., Harris, Georgia and Birnbaum, Christina. 2024. "Global Diversity and Distribution of Rhizosphere and Root-Associated Fungi in Coastal Wetlands: A Systematic Review." Estuaries and Coasts. 47 (4), pp. 905-916. https://doi.org/10.1007/s12237-024-01343-w

Article

Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia
Birnbaum, Christina, Dearnaley, John, Egidi, Eleonora, Frew, Adam, Hopkins, Anna, Powell, Jeff, Aguilar-Trigueros, Carlos, Liddicoat, Craig, Albornoz, Felipe, Heuck, Meike K., Dadzie, Frederick A., Florence, Luke, Singh, Pankaj, Mansfield, Tomas, Rajapaksha, Kumari, Stewart, Jana, Rallo, Paola, Peddle, Shawn D. and Chiarenza, Giancarlo. 2024. "Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia." New Phytologist. 241 (3), pp. 974-981. https://doi.org/10.1111/nph.19440

Article

Sr65: a widely effective gene for stem rust resistance in wheat
Norman, Michael, Chen, Chunhong, Miah, Hanif, Patpour, Mehran, Sørensen, Chris, Hovmøller, Mogens, Forrest, Kerrie, Kumar, Subodh, Prasad, Pramod, Gangwar, Om Prakash, Bhardwaj, Subhash, Bariana, Harbans, Periyannan, Sambasivam and Bansal, Urmil. 2024. "Sr65: a widely effective gene for stem rust resistance in wheat." Theoretical and Applied Genetics: international journal of plant breeding research. 137 (1). https://doi.org/10.1007/s00122-023-04507-7

Article

Phenotypic profiling of lentil (Lens culinaris Medikus) accessions enabled identification of promising lines for use in breeding for high yield, early flowering and desirable traits
Naik, Yogesh Dashrath, Sharma, Vinay Kumar, Ask, Muraleedhar Sidaram, Rangari, Sagar Krushnaji, Kumar, Raj, Dikshit, Harsh Kumar, Sangita, Sahani, Kant, Ravi, Mishra, Gyan, Mir, Reyazul Rouf, Kudapa, Himabindu, Elango, Dinakaran, Zwart, Rebecca S., Varshney, Rajeev Kumar and Thudi, Mahendar. 2024. "Phenotypic profiling of lentil (Lens culinaris Medikus) accessions enabled identification of promising lines for use in breeding for high yield, early flowering and desirable traits ." Plant Genetic Resources: Characterization and Utilization. 22 (2), pp. 69-77. https://doi.org/10.1017/S1479262124000042

Article

Talcarpones A and B: bisnaphthazarin-derived metabolites from the Australian fungus Talaromyces johnpittii sp. nov. MST-FP2594
Lacey, Alastair E., Minns, Scott A., Chen, Rachel, Vuong, Daniel, Lacey, Ernest, Kalaitzis, John A., Tan, Yu Pei, Shivas, Roger G., Butler, Mark S. and Piggott, Andrew M.. 2024. "Talcarpones A and B: bisnaphthazarin-derived metabolites from the Australian fungus Talaromyces johnpittii sp. nov. MST-FP2594." The Journal of Antibiotics. 77 (3), pp. 147-155. https://doi.org/10.1038/s41429-023-00688-x

Article

Meta-QTL analysis enabled identification of candidate genes and haplotypes for enhancing biotic stress resistance in chickpea
Isha, Ishita, Singh, Sarvjeet, Jha, Uday, Laxuman, C., Kudapa, Himabindu, Varshney, Rajeev K. V and Thudi, Mahendar. 2024. "Meta-QTL analysis enabled identification of candidate genes and haplotypes for enhancing biotic stress resistance in chickpea." Journal of Plant Biochemistry and Biotechnology. https://doi.org/10.1007/s13562-024-00873-5

Article

Herbivory-driven shifts in arbuscular mycorrhizal fungal community assembly: increased fungal competition and plant phosphorus benefits
Frew, Adam, Opik, Maarja, Oja, Jane, Vahter, Tanel, Hiiesalu, Inga and Aguilar-Trigueros, Carlos A.. 2024. "Herbivory-driven shifts in arbuscular mycorrhizal fungal community assembly: increased fungal competition and plant phosphorus benefits." New Phytologist. 241 (5), pp. 1891-1899. https://doi.org/10.1111/nph.19474

Letter

Mutagenesis of wheat powdery mildew reveals a single gene controlling both NLR and tandem kinase-mediated immunity
Bernasconi, Zoe, Stirnemann, Ursin, Heuberger, Matthias, Sotiropoulos, Alexandros, Graf, Johannes, Wicker, Thomas, Keller, Beat and Sánchez-Martín, Javier. 2024. "Mutagenesis of wheat powdery mildew reveals a single gene controlling both NLR and tandem kinase-mediated immunity." Molecular Plant-Microbe Interactions. 37 (3), pp. 264-276. https://doi.org/10.1094/MPMI-09-23-0136-FI

Article

Genomic approaches to enhance adaptive plasticity to cope with soil constraints amidst climate change in wheat
Bhoite, Roopali, Han, Yong, Alamuru, Alamuru Krishna, Varshney, Rajeev K. and Sharma, Darshan Lal. 2024. "Genomic approaches to enhance adaptive plasticity to cope with soil constraints amidst climate change in wheat." The Plant Genome. 17 (1). https://doi.org/10.1002/tpg2.20358

Article

Soil abounds with life – and supports all life above it. But Australian soils need urgent repair
Frew, Adam, Birnbaum, Christina, Egidi, Eleonora and Heuck, Meike Katharina. 2023. "Soil abounds with life – and supports all life above it. But Australian soils need urgent repair." The Conversation.

Blog

Enzymatic Investigation of Spongospora subterranea Zoospore Attachment to Roots of Potato Cultivars Resistant or Susceptible to Powdery Scab Disease
Yu, Xian, Wilson, Wilson, Eyles, Eyles, Balotf, Sadegh., Tegg, Robert Stephen and Wilson, Calum Rae. 2023. "Enzymatic Investigation of Spongospora subterranea Zoospore Attachment to Roots of Potato Cultivars Resistant or Susceptible to Powdery Scab Disease." Proteomes. 11 (1). https://doi.org/10.3390/proteomes11010007

Article

From invisible to visible: Terrestrial biodiversity assessments and conservation policies must include soil organisms in Australia
Birnbaum, Christina and Dearnaley, John. 2023. "From invisible to visible: Terrestrial biodiversity assessments and conservation policies must include soil organisms in Australia." Science. 381 (6658). https://doi.org/10.1126/science.adg7870

Letter

Vending machines can increase access to HIV testing for diverse groups at risk of HIV and STI: facilitators for use and additional opportunities
Bell, SFE, Coffey, L, Mullens, AB, Redmond, A, Debattista, J, Phillips, TM, Warner, M, Finch, A, White, J, Gilks, CF and Dean, JA. 2023. "Vending machines can increase access to HIV testing for diverse groups at risk of HIV and STI: facilitators for use and additional opportunities." Australasian Sexual and Reproductive Health Conference 2023. Manly, Sydney 18 - 20 Sep 2023 Australia. CSIRO Publishing. https://doi.org/10.1071/SHv20n5abs

Paper

Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma
Megremis, Spyridon, Constantinides, Bede, Xepapadaki, Paraskevi, Yap, Chuan Fu, Sotiropoulos, Alexandros G., Bachert, Claus, Finotto, Susetta, Jartti, Tuomas, Tapinos, Avraam, Vuorinen, Tytti, Andreakos, Evangelos, Robertson, David L. and Papadopoulos, Nikolaos G.. 2023. "Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma." Scientific Reports. 13 (1). https://doi.org/10.1038/s41598-023-34730-7

Article

A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material
Poretti, Manuel, Praz, Coraline R, Sotiropoulos, Alexandros G. and Wicker, Thomas. 2023. "A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material." Plant Direct. 7 (3), p. e484. https://doi.org/10.1002/pld3.484

Article

The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen
Kunz, Lukas, Sotiropoulos, Alexandros G., Graf, Johannes, Razavi, Mohammad, Keller, Beat and Müller, Marion C.. 2023. "The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen." BMC Biology. 21 (1), p. 29. https://doi.org/10.1186/s12915-023-01513-5

Article

Fungal Planet description sheets: 1478-1549
Crous, P., Osieck, E., Shivas, R. G., Tan, Y., Bishop-Hurley, S., Esteve-Raventos, F., Larsson, E., Luangsa-ard, J., Pancorbo, F., Balashov, S., Baseia, I. G., Boekhout, T., Chandranayaka, S., Cowan, D. A., Cruz, R. H. S. F., Czachura, P., De la Pena-Lastra, S., Dovana, F., Drury, B., ..., Groenewald, J. Z.. 2023. "Fungal Planet description sheets: 1478-1549." Persoonia. 50, pp. 158-310. https://doi.org/10.3767/persoonia.2023.50.05

Article