Centre for Crop Health


Latest research outputs

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Non-visual common root rot disease detection using NIR spectrum and machine learning methods
Xiong, Yiyi, McCarthy, Cheryl, Humpal, Jacob and Percy, Cassandra. "Non-visual common root rot disease detection using NIR spectrum and machine learning methods." 2023 11th International Conference on Agro-Geoinformatics (Agro-Geoinformatics). Wuhan, China 25 - 28 Jul 2023 IEEE (Institute of Electrical and Electronics Engineers). https://doi.org/https://ieeexplore.ieee.org/xpl/conhome/10233256/proceeding

Paper

Vending machines can increase access to HIV testing for diverse groups at risk of HIV and STI: facilitators for use and additional opportunities
Bell, SFE, Coffey, L, Mullens, AB, Redmond, A, Debattista, J, Phillips, TM, Warner, M, Finch, A, White, J, Gilks, CF and Dean, JA. 2023. "Vending machines can increase access to HIV testing for diverse groups at risk of HIV and STI: facilitators for use and additional opportunities." Australasian Sexual and Reproductive Health Conference 2023. Manly, Sydney 18 - 20 Sep 2023 Australia. CSIRO Publishing. https://doi.org/10.1071/SHv20n5abs

Paper

Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma
Megremis, Spyridon, Constantinides, Bede, Xepapadaki, Paraskevi, Yap, Chuan Fu, Sotiropoulos, Alexandros G., Bachert, Claus, Finotto, Susetta, Jartti, Tuomas, Tapinos, Avraam, Vuorinen, Tytti, Andreakos, Evangelos, Robertson, David L. and Papadopoulos, Nikolaos G.. 2023. "Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma." Scientific Reports. 13 (1). https://doi.org/10.1038/s41598-023-34730-7

Article

A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material
Poretti, Manuel, Praz, Coraline R, Sotiropoulos, Alexandros G. and Wicker, Thomas. 2023. "A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material." Plant Direct. 7 (3), p. e484. https://doi.org/10.1002/pld3.484

Article

The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen
Kunz, Lukas, Sotiropoulos, Alexandros G., Graf, Johannes, Razavi, Mohammad, Keller, Beat and Müller, Marion C.. 2023. "The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen." BMC Biology. 21 (1), p. 29. https://doi.org/10.1186/s12915-023-01513-5

Article

Mutagenesis of wheat powdery mildew reveals a single gene controlling both NLR and tandem kinase-mediated immunity
Bernasconi, Zoe, Stirnemann, Ursin, Heuberger, Matthias, Sotiropoulos, Alexandros, Graf, Johannes, Wicker, Thomas, Keller, Beat and Sánchez-Martín, Javier. 2023. "Mutagenesis of wheat powdery mildew reveals a single gene controlling both NLR and tandem kinase-mediated immunity." Molecular Plant-Microbe Interactions. https://doi.org/10.1094/MPMI-09-23-0136-FI

Article

Fungal Planet description sheets: 1478-1549
Crous, P., Osieck, E., Shivas, R. G., Tan, Y., Bishop-Hurley, S., Esteve-Raventos, F., Larsson, E., Luangsa-ard, J., Pancorbo, F., Balashov, S., Baseia, I. G., Boekhout, T., Chandranayaka, S., Cowan, D. A., Cruz, R. H. S. F., Czachura, P., De la Pena-Lastra, S., Dovana, F., Drury, B., ..., Groenewald, J. Z.. 2023. "Fungal Planet description sheets: 1478-1549." Persoonia. 50, pp. 158-310. https://doi.org/10.3767/persoonia.2023.50.05

Article

Corrigendum to: Marasmius australotrichotus (Marasmiaceae), a new setose species from Australia, and an intriguing range extension for M. paratrichotus
Guard, Frances, Dearnaley, John, Lebel, Teresa, Barrett, Matthew D. and Bougher, Neale L.. 2023. "Corrigendum to: Marasmius australotrichotus (Marasmiaceae), a new setose species from Australia, and an intriguing range extension for M. paratrichotus." Nuytsia. 34, pp. 295-297. https://doi.org/10.58828/nuy01066

Article

Taxonomy of Macrophomina—traditional to molecular approaches
Poudel, Barsha and Vaghefi, Niloofar. 2023. "Taxonomy of Macrophomina—traditional to molecular approaches." Kumar, Pankaj and Dubey, Ramesh Chandra (ed.) Macrophomina Phaseolina: Ecobiology, Pathology and Management. United Kingdom. Elsevier. pp. 3-8

Edited book (chapter)

Nematode problems in wheat and barley and their sustainable management
Owen, Kirsty, Walia, Raman Kumar, Yan, Guiping and Khan, Mujeebur Rahman. 2023. "Nematode problems in wheat and barley and their sustainable management." Khan, Mujeebur Rahman and Quintanilla, Marisol (ed.) Nematode Diseases of Crops and their Sustainable Management. India. Elsevier. pp. 97-131

Edited book (chapter)

Nematode problems in pulse crops and their sustainable management
Briar, Shabeg S., Khan, Mujeebur Rahman and Zwart, Rebecca. 2023. "Nematode problems in pulse crops and their sustainable management." Khan, Mujeebur Rahman and Quintanilla, Marisol (ed.) Nematode Diseases of Crops and their Sustainable Management. India. Elsevier. pp. 183-204

Edited book (chapter)

Isolation of strains and their genome sequencing to analyze the mating system of Ophiocordyceps robertsii
Xu, Melvin, Ashley, Nathan A., Vaghefi, Niloofar, Wilkinson, Ian and Idnurm, Alexander. 2023. "Isolation of strains and their genome sequencing to analyze the mating system of Ophiocordyceps robertsii." PLoS One. 18 (5). https://doi.org/10.1371/journal.pone.0284978

Article

A review on common root rot of wheat and barley in Australia
Xiong, Yiyi, McCarthy, Cheryl, Humpal, Jacob and Percy, Cassandra. 2023. "A review on common root rot of wheat and barley in Australia." Plant Pathology. 72 (8), pp. 1347-1364. https://doi.org/10.1111/ppa.13777

Article

An international wheat diversity panel reveals novel sources of genetic resistance to tan spot in Australia
Taylor, Julian, Jorgensen, Dorthe, Moff, Caroline S., Chalmers, Ken J., Fox, Rebecca, Hollaway, Grant J., Cook, Melissa J., Neate, Stephen M., See, Pao Theen and Shankar, Manisha. 2023. "An international wheat diversity panel reveals novel sources of genetic resistance to tan spot in Australia." Theoretical and Applied Genetics: international journal of plant breeding research. 136 (3). https://doi.org/10.1007/s00122-023-04332-y

Article

Openness and Computational Reproducibility in Plant Pathology: Where We Stand and a Way Forward
Sparks, Adam H., Del Ponte, Emerson M., Alves, Kaique S., Foster, Zachary S. L. and Grunwald, Niklaus J.. 2023. "Openness and Computational Reproducibility in Plant Pathology: Where We Stand and a Way Forward." Phytopathology: International Journal of the American Phytopathological Society. 113 (7), pp. 1159-1170. https://doi.org/10.1094/PHYTO-10-21-0430-PER

Article

Editorial: Plant genetic and genomic resources for sustained crop improvement
Rangan, Parimalan, Henry, Robert, Wambugu, Peterson and Periyannan, Sambasivam. 2023. "Editorial: Plant genetic and genomic resources for sustained crop improvement." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1266698

Editorial

The Keys to Controlling Wheat Rusts: Identification and Deployment of Genetic Resistance
Norman, Michael, Bariana, Harbans, Bansal, Urmil and Periyannan, Sambasivam. 2023. "The Keys to Controlling Wheat Rusts: Identification and Deployment of Genetic Resistance." Phytopathology: International Journal of the American Phytopathological Society. 113 (4), pp. 667-677. https://doi.org/10.1094/PHYTO-02-23-0041-IA

Article

Belowground crop responses to root herbivory are associated with the community structure of native arbuscular mycorrhizal fungi
Ng, Anna, Wilson, Bree A.L. and Frew, Adam. 2023. "Belowground crop responses to root herbivory are associated with the community structure of native arbuscular mycorrhizal fungi." Applied Soil Ecology. 185. https://doi.org/10.1016/j.apsoil.2022.104797

Article

A global-temporal analysis on Phytophthora sojae resistance-gene efficacy
McCoy, Austin G., Belanger, Richard R., Bradley, Carl A., Cerritos-Garcia, Daniel G., Garnica, Vinicius C., Giesler, Loren J., Grijalba, Pablo E., Guillin, Eduardo, Henriquez, Maria A., Kim, Yong Min, Malvick, Dean K., Matthiesen, Rashelle L., Mideros, Santiago X., Noel, Zachary A., Robertson, Alison E., Roth, Mitchell G., Schmidt, Clarice L., Smith, Damon L., Sparks, Adam H., ..., Chilvers, Martin I.. 2023. "A global-temporal analysis on Phytophthora sojae resistance-gene efficacy." Nature Communications. 14 (1). https://doi.org/10.1038/s41467-023-41321-7

Article

The Good, the Bad, and the Misleading: How to Improve the Quality of 'Genome Announcements'?
Kusch, Stefan, Vaghefi, Niloofar and Kiss, Levente. 2023. "The Good, the Bad, and the Misleading: How to Improve the Quality of 'Genome Announcements'?" Molecular Plant-Microbe Interactions. 36 (7), pp. 393-396. https://doi.org/10.1094/MPMI-01-23-0009-LE

Letter

Major viral diseases in grain legumes: designing disease resistant legumes from plant breeding and OMICS integration
Jha, Uday Chand, Nayyar, Harsh, Chattopadhyay, Anirudha, Beena, Radha, Lone, Ajaz A., Naik, Yogesh Dashrath, Thudi, Mahendar, Prasad, Pagadala Venkata Vara, Gupta, Sanjeev, Dixit, Girish Prasad and Siddique, Kadambot H. M.. 2023. "Major viral diseases in grain legumes: designing disease resistant legumes from plant breeding and OMICS integration." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1183505

Article

Editorial: Advances in crop resistance breeding using modern genomic tools
Huang, Lin, Li, Yinghui, Chen, Shisheng, Periyannan, Sambasivam and Fahima, Tzion. 2023. "Editorial: Advances in crop resistance breeding using modern genomic tools." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1143689

Editorial

Friends to the rescue: using arbuscular mycorrhizal fungi to future-proof Australian agriculture
Heuck, Meike Katharina, Birnbaum, Christina and Frew, Adam. 2023. "Friends to the rescue: using arbuscular mycorrhizal fungi to future-proof Australian agriculture." Microbiology Australia. 44 (1), pp. 5-8. https://doi.org/10.1071/MA23002

Article

Widespread genetic heterogeneity and genotypic grouping associated with fungicide resistance among barley spot form net blotch isolates in Australia
Hassett, Kealan, Muria-Gonzalez, Mariano Jordi, Turner, Aleesha, McLean, Mark S., Wallwork, Hugh, Martin, Anke and Ellwood, Simon R.. 2023. "Widespread genetic heterogeneity and genotypic grouping associated with fungicide resistance among barley spot form net blotch isolates in Australia." G3: Genes, Genomes, Genetics. 13 (5).

Article

First report of Fusarium madaense as a cause of root and stalk rot on Sorghum bicolor in Australia
Gunasinghe, N., Vaghefi, N., Shivas, R. G., Tan, Y. P., Jordan, D., Mace, E., Cruickshank, A. and Martin, A.. 2023. "First report of Fusarium madaense as a cause of root and stalk rot on Sorghum bicolor in Australia." New Disease Reports. 47 (2). https://doi.org/10.1002/ndr2.12192

Article

Host filtering, not competitive exclusion, may be the main driver of arbuscular mycorrhizal fungal community assembly under high phosphorus
Frew, Adam, Heuck, Meike and Aguilar-Trigueros, Carlos A.. 2023. "Host filtering, not competitive exclusion, may be the main driver of arbuscular mycorrhizal fungal community assembly under high phosphorus." Functional Ecology. 37 (7), pp. 1856-1869. https://doi.org/10.1111/1365-2435.14349

Article

Australia offers unique insight into the ecology of arbuscular mycorrhizal fungi: An opportunity not to be lost
Frew, Adam and Aguilar-Trigueros, Carlos A.. 2023. "Australia offers unique insight into the ecology of arbuscular mycorrhizal fungi: An opportunity not to be lost." Austral Ecology: a journal of ecology in the Southern Hemisphere. 48 (8), pp. 1713-1720. https://doi.org/10.1111/aec.13451

Article

Multi-parental fungal mapping population study to detect genomic regions associated with Pyrenophora teres f. teres virulence
Dahanayaka, Buddhika A. and Martin, Anke. 2023. "Multi-parental fungal mapping population study to detect genomic regions associated with Pyrenophora teres f. teres virulence." Scientific Reports. 13 (1). https://doi.org/10.1038/s41598-023-36963-y

Article

A pathogen-induced putative NAC transcription factor mediates leaf rust resistance in barley
Chen, Chunhong, Jost, Matthias, Outram, Megan A., Friendship, Dorian, Chen, Jian, Wang, Aihua, Periyannan, Sambasivam, Bartos, Jan, Holusova, Katerina, Dolezel, Jaroslav, Zhang, Peng, Bhatt, Dhara, Singh, Davinder, Lagudah, Evans, Park, Robert F. and Dracatos, Peter M.. 2023. "A pathogen-induced putative NAC transcription factor mediates leaf rust resistance in barley." Nature Communications. 14 (1). https://doi.org/10.1038/s41467-023-41021-2

Article

Multi-locus genome-wide association study of chickpea reference set identifies genetic determinants of Pratylenchus thornei resistance
Channale, Sonal, Thompson, John P., Varshney, Rajeev K., Thudi, Mahendar and Zwart, Rebecca S.. 2023. "Multi-locus genome-wide association study of chickpea reference set identifies genetic determinants of Pratylenchus thornei resistance." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1139574

Article

Genomic approaches to enhance adaptive plasticity to cope with soil constraints amidst climate change in wheat
Bhoite, Roopali, Han, Yong, Alamuru, Alamuru Krishna, Varshney, Rajeev K. and Sharma, Darshan Lal. 2023. "Genomic approaches to enhance adaptive plasticity to cope with soil constraints amidst climate change in wheat." The Plant Genome. https://doi.org/10.1002/tpg2.20358

Article

Water availability alters the community structure of arbuscular mycorrhizal fungi and determines plant mycorrhizal benefit
Frew, Adam. 2023. "Water availability alters the community structure of arbuscular mycorrhizal fungi and determines plant mycorrhizal benefit." Plants, People, Planet. 5 (5), pp. 683-689. https://doi.org/10.1002/ppp3.10372

Article

Marasmius australotrichotus (Marasmiaceae), a new setose species from Australia, and an intriguing range extension for M. paratrichotus
Dearnaley, John, Guard, Frances E., Lebel, Teresa, Barrett, Matt D. and Bougher, Neale L.. 2023. "Marasmius australotrichotus (Marasmiaceae), a new setose species from Australia, and an intriguing range extension for M. paratrichotus." Nuytsia. 34, pp. 203-219. https://doi.org/10.58828/nuy01059

Article

The role of microneedles in the healing of chronic wounds
Ghiyasi, Yasaman, Prewett, Philip D, Davies, Graham J and Faraji Rad, Zahra. 2023. "The role of microneedles in the healing of chronic wounds." International Journal of Pharmaceutics. 641. https://doi.org/10.1016/j.ijpharm.2023.123087

Article

Recent progress in PLGA-based microneedle-mediated transdermal drug and vaccine delivery
Malek-Khatabi, A., Razavi, M.S., Abdollahi, A., Rahimzadeghan, M., Moammeri, F., Sheikhi, M., Tavakoli, M., Rad-Malekshahi, M. and Faraji Rad, Z.. 2023. "Recent progress in PLGA-based microneedle-mediated transdermal drug and vaccine delivery." Biomaterials Science. 11 (16), pp. 5390-5409. https://doi.org/10.1039/D3BM00795B

Article

Construction and Deconstruction: Materials and substances from 'waste'
Burey, Paulomi, Feldman, Jessica, Seligmann, Hannah, Song, Eric, Flynn, Matthew, Helwig, Andreas, Gharineiat, Zahra, Seneviratne, Dinuki, Whiteside, Eliza, Shelley, Tristan, Priesler, Nils, Manalo, Allan, Mirzaghorbanali, Ali, Nourizadeh, Hadi, Roberts, Michae, Nicol, Rose, Redmond, Petrea, Lynch, Mark, Dearnaley, John, ..., Germon, Geoff. 2023. "Construction and Deconstruction: Materials and substances from 'waste'." Chemistry in Australia. (June-August 2023), pp. 16-21.

Magazine

Phenotypic and genotypic diversity of Puccinia sorghi in Eastern Australia: implications for maize breeding programs
Quade, Aurelie, Park, Robert F., Stodart, Benjamin, Ding, Yi, Zhang, Peng, Thang, Mike, Poudel, Barsha, Vaghefi, Niloofar and Ash, Gavin James. 2023. "Phenotypic and genotypic diversity of Puccinia sorghi in Eastern Australia: implications for maize breeding programs ." PhytoFrontiers. 3 (3), pp. 610-618. https://doi.org/10.1094/PHYTOFR-12-22-0151-R

Article

Peronosclerospora neglecta sp. nov.—a widespread and overlooked threat to corn (maize) production in the tropics
Muis, Amran, Ryley, Malcolm J., Tan, Yu Pei, Suharjo, Radix, Nonci, Nurnina, Danaatmadja, Yanuar, Hidayat, Iman, Widiastuti, Ani, Widinugraheni, Sri, Shivas, Roger G. and Thines, Marco. 2023. "Peronosclerospora neglecta sp. nov.—a widespread and overlooked threat to corn (maize) production in the tropics ." Mycological Progress: international journal of fungal sciences. 22 (2). https://doi.org/10.1007/s11557-022-01862-5

Article

Aiding coastal wetland restoration via the belowground soil microbiome: an overview
Birnbaum, Christina and Trevathan-Tackett, Stacey M.. 2023. "Aiding coastal wetland restoration via the belowground soil microbiome: an overview." Restoration Ecology. 31 (7). https://doi.org/10.1111/rec.13824

Article

Tolerance of wheat (Triticum aestivum) genotypes to root-lesion nematode (Pratylenchus thornei) in the subtropical grain region of eastern Australia
Thompson, John P., Sheedy, Jason G., Robinson, Neil A. and Clewett, Timothy G.. 2021. "Tolerance of wheat (Triticum aestivum) genotypes to root-lesion nematode (Pratylenchus thornei) in the subtropical grain region of eastern Australia." Euphytica: international journal on plant breeding. 217 (3), pp. 1-30. https://doi.org/10.1007/s10681-020-02761-0

Article