Centre for Crop Health


Latest research outputs

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Construction and Deconstruction: Materials and substances from 'waste'
Burey, Paulomi, Feldman, Jessica, Seligmann, Hannah, Song, Eric, Flynn, Matthew, Helwig, Andreas, Gharineiat, Zahra, Seneviratne, Dinuki, Whiteside, Eliza, Shelley, Tristan, Priesler, Nils, Manalo, Allan, Mirzaghorbanali, Ali, Nourizadeh, Hadi, Roberts, Michae, Nicol, Rose, Redmond, Petrea, Lynch, Mark, Dearnaley, John, ..., Germon, Geoff. 2023. "Construction and Deconstruction: Materials and substances from 'waste'." Chemistry in Australia. (June-August 2023), pp. 16-21.

Magazine

Phenotypic and genotypic diversity of Puccinia sorghi in Eastern Australia: implications for maize breeding programs
Quade, Aurelie, Park, Robert F., Stodart, Benjamin, Ding, Yi, Zhang, Peng, Thang, Mike, Poudel, Barsha, Vaghefi, Niloofar and Ash, Gavin James. 2023. "Phenotypic and genotypic diversity of Puccinia sorghi in Eastern Australia: implications for maize breeding programs ." PhytoFrontiers. 3 (3), pp. 610-618. https://doi.org/10.1094/PHYTOFR-12-22-0151-R

Article

Peronosclerospora neglecta sp. nov.—a widespread and overlooked threat to corn (maize) production in the tropics
Muis, Amran, Ryley, Malcolm J., Tan, Yu Pei, Suharjo, Radix, Nonci, Nurnina, Danaatmadja, Yanuar, Hidayat, Iman, Widiastuti, Ani, Widinugraheni, Sri, Shivas, Roger G. and Thines, Marco. 2023. "Peronosclerospora neglecta sp. nov.—a widespread and overlooked threat to corn (maize) production in the tropics ." Mycological Progress: international journal of fungal sciences. 22 (2). https://doi.org/10.1007/s11557-022-01862-5

Article

Aiding coastal wetland restoration via the belowground soil microbiome: an overview
Birnbaum, Christina and Trevathan-Tackett, Stacey M.. 2023. "Aiding coastal wetland restoration via the belowground soil microbiome: an overview." Restoration Ecology. 31 (7). https://doi.org/10.1111/rec.13824

Article

Tolerance of wheat (Triticum aestivum) genotypes to root-lesion nematode (Pratylenchus thornei) in the subtropical grain region of eastern Australia
Thompson, John P., Sheedy, Jason G., Robinson, Neil A. and Clewett, Timothy G.. 2021. "Tolerance of wheat (Triticum aestivum) genotypes to root-lesion nematode (Pratylenchus thornei) in the subtropical grain region of eastern Australia." Euphytica: international journal on plant breeding. 217 (3), pp. 1-30. https://doi.org/10.1007/s10681-020-02761-0

Article

Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens
Liu, Hongwei, Li, Jiayu, Carvalhais, Lilia C., Percy, Cassandra D., Verma, Jay Prakash, Schenk, Peer M. and Singh, Brajesh K.. 2021. "Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens." New Phytologist. 229 (5), pp. 2873-2885. https://doi.org/10.1111/nph.17057

Article

Cryptic diversity found in Didymellaceae from Australian native legumes
Keirnan, Elizabeth C., Tan, Yu Pei, Laurence, Matthew H., Mertin, Allison A., Liew, Edward C. Y., Summerell, Brett A. and Shivas, Roger G.. 2021. "Cryptic diversity found in Didymellaceae from Australian native legumes." MycoKeys. 78, pp. 1-20. https://doi.org/10.3897/mycokeys.78.60063

Article

Grain protein concentration at elevated [CO2] is determined by genotype dependent variations in nitrogen remobilisation and nitrogen utilisation efficiency in wheat
Thompson, Michael, Okamoto, Mamoru, Martin, Anke and Seneweera, Saman. 2022. "Grain protein concentration at elevated [CO2] is determined by genotype dependent variations in nitrogen remobilisation and nitrogen utilisation efficiency in wheat." Plant Physiology and Biochemistry. 192, pp. 120-128. https://doi.org/10.1016/j.plaphy.2022.10.003

Article

Draft Genome Sequences of Dickeya Species Associated with Soft Rot Diseases in Pineapple (Ananas comosus) and Banana (Musa spp.)
Young, Anthony J., Birt, Henry W. G., Vaghefi, Niloofar, Hoelzle, Robert D. and Dennis, Paul G.. 2022. "Draft Genome Sequences of Dickeya Species Associated with Soft Rot Diseases in Pineapple (Ananas comosus) and Banana (Musa spp.)." Microbiology Resource Announcements. 11 (11), pp. 1-2. https://doi.org/10.1128/mra.00716-22

Notes or commentaries

Fusarium pseudograminearum and F. culmorum affect the root system architecture of bread wheat
Saad, Ahmed, Christopher, Jack, Martin, Anke, McDonald, Stephen and Percy, Cassandra. 2023. "Fusarium pseudograminearum and F. culmorum affect the root system architecture of bread wheat." The Crop Journal. 11 (1), pp. 316-321. https://doi.org/10.1016/j.cj.2022.08.013

Article

Discovery of resistance to Pratylenchus neglectus among P. thornei-resistant Iranian landrace wheats and the introgression of both resistances into advanced breeding lines
Sheedy, Jason G., Lin, Jing and Thompson, John P.. 2022. "Discovery of resistance to Pratylenchus neglectus among P. thornei-resistant Iranian landrace wheats and the introgression of both resistances into advanced breeding lines." Plant Pathology. 71 (9), pp. 2017-2028. https://doi.org/10.1111/ppa.13616

Article

Current and Future Approaches to Mitigate Conflict between Humans and Asian Elephants: The Potential Use of Aversive Geofencing Devices
Cabral de Mel, Surendranie Judith, Seneweera, Saman, de Mel, Ruvinda Kasun, Dangolla, Ashoka, Weerakoon, Devaka Keerthi, Maraseni, Tek and Allen, Benjamin Lee. 2022. "Current and Future Approaches to Mitigate Conflict between Humans and Asian Elephants: The Potential Use of Aversive Geofencing Devices." Animals. 12 (21), pp. 1-29. https://doi.org/10.3390/ani12212965

Article

The diversity of microfungi associated with grasses in the Sporobolus indicus complex in Queensland, Australia
Steinrucken, Tracey V., Vitelli, Joseph S., Holdom, David G. and Tan, Yu Pei. 2022. "The diversity of microfungi associated with grasses in the Sporobolus indicus complex in Queensland, Australia." Frontiers in Fungal Biology. 3, pp. 1-18. https://doi.org/10.3389/ffunb.2022.956837

Article

Investigation of Two QTL Conferring Seedling Resistance to Fusarium Crown Rot in Barley on Reducing Grain Yield Loss under Field Environments
Zheng, Zhi, Powell, Jonathan, Gao, Shang, Percy, Cassandra, Kelly, Alison, Macdonald, Bethany, Zhou, Meixue, Davies, Philip and Liu, Chunji. 2022. "Investigation of Two QTL Conferring Seedling Resistance to Fusarium Crown Rot in Barley on Reducing Grain Yield Loss under Field Environments." Agronomy. 12 (6), pp. 1-14. https://doi.org/10.3390/agronomy12061282

Article

IMA Genome - F16 Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta
Wingfield, Brenda D., De Vos, Lieschen, Wilson, Andi M., Duong, Tuan A., Vaghefi, Niloofar, Botes, Angela, Kharwar, Ravindra Nath, Chand, Ramesh, Poudel, Barsha, Aliyu, Habibu, Barbetti, Martin J., Chen, ShuaiFei, de Maayer, Pieter, Liu, FeiFei, Navathe, Sudhir, Sinha, Shagun, Steenkamp, Emma T., Suzuki, Hiroyuki, Tshisekedi, Kalonji A., ..., Wingfield, Michael J.. 2022. "IMA Genome - F16 Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta." IMA Fungus: the global mycological journal. 13 (1), pp. 1-22. https://doi.org/10.1186/s43008-022-00089-z

Article

Winter Cereal Reactions to Common Root Rot and Crown Rot Pathogens in the Field
Saad, Ahmed, Macdonald, Bethany, Martin, Anke, Knight, Noel L. and Percy, Cassandra. 2022. "Winter Cereal Reactions to Common Root Rot and Crown Rot Pathogens in the Field." Agronomy. 12 (10), pp. 1-18. https://doi.org/10.3390/agronomy12102571

Article

Using a hybrid mapping population to identify genomic regions of Pyrenophpra teres associated with virulence
Martin, Anke and Dahanayaka, Buddhika. 2022. "Using a hybrid mapping population to identify genomic regions of Pyrenophpra teres associated with virulence." Frontiers in Plant Science. 13, pp. 1-13. https://doi.org/10.3389/fpls.2022.925107

Article

Fungal Planet description sheets: 1383–1435
Crous, P. W., Boers, J., Holdom, D., Osieck, E. R., Steinrucken, T. V., Tan, Y. P., Vitelli, J. S., Shivas, R. G., Barrett, M., Broadbridge, J., Larsson, E., Lebel, T., Pinruan, U., Sommai, S., Alvarado, P., Bonito, G., Decock, C. A., De la Pena-Lastra, S., Delgado, G., ..., Groenewald, J. Z.. 2022. "Fungal Planet description sheets: 1383–1435." Persoonia. 48, pp. 1-153. https://doi.org/10.3767/persoonia.2022.48.08

Article

Resporulation of Metarhizium anisopliae granules on soil and mortality of Tenebrio molitor: Implications for wireworm management in sweetpotato
Shah, Sudhan, Ash, Gavin J. and Wilson, Bree A. L.. 2023. "Resporulation of Metarhizium anisopliae granules on soil and mortality of Tenebrio molitor: Implications for wireworm management in sweetpotato." Annals of Applied Biology. 182 (1), pp. 65-76. https://doi.org/10.1111/aab.12797

Article

Research priorities for global food security under extreme events
Mehrabi, Zia, Delzeit, Ruth, Ignaciuk, Adriana, Levers, Christian, Braich, Ginni, Bajaj, Kushank, Amo-Aidoo, Araba, Anderson, Weston, Balgah, Roland A., Benton, Tim G., Chari, Martin M., Ellis, Erle C., Gahi, Narcisse, Gaupp, Franziska, Garibaldi, Lucas A., Gerber, James S., Godde, Cecile M., Grass, Ingo, Heimann, Tobias, ..., You, Liangzhi. 2022. "Research priorities for global food security under extreme events." One Earth. 5 (7), pp. 756-766. https://doi.org/10.1016/j.oneear.2022.06.008

Article

Resistance to root-lesion nematode Pratylenchus neglectus identified in a new collection of two wild chickpea species (Cicer reticulatum and C. echinospermum) from Turkey
Rostad, Hannah E., Reen, Roslyn A., Mumford, Michael H., Zwart, Rebecca S. and Thompson, John P.. 2022. "Resistance to root-lesion nematode Pratylenchus neglectus identified in a new collection of two wild chickpea species (Cicer reticulatum and C. echinospermum) from Turkey." Plant Pathology. 71 (5), pp. 1205-1219. https://doi.org/10.1111/ppa.13544

Article

Cereal and Pulse Crops with Improved Resistance to Pratylenchus thornei Are Needed to Maximize Wheat Production and Expand Crop Sequence Options
Owen, Kirsty J., Clewett, Timothy G., Bell, Kerry L. and Thompson, John P. 2022. "Cereal and Pulse Crops with Improved Resistance to Pratylenchus thornei Are Needed to Maximize Wheat Production and Expand Crop Sequence Options." Agronomy. 12 (3), pp. 1-16. https://doi.org/10.3390/agronomy12030573

Article

The role of nutrients underlying interactions among root‑nodule bacteria (Bradyrhizobium sp.), arbuscular mycorrhizal fungi (Funneliformis mosseae) and root‑lesion nematodes (Pratylenchus thornei) in nitrogen fixation and growth of mung bean (Vigna radiata)
Gough, E. C., Owen, K. J., Zwart, R. S. and Thompson, J. P.. 2022. "The role of nutrients underlying interactions among root‑nodule bacteria (Bradyrhizobium sp.), arbuscular mycorrhizal fungi (Funneliformis mosseae) and root‑lesion nematodes (Pratylenchus thornei) in nitrogen fixation and growth of mung bean (Vigna radiata)." Plant and Soil: international journal on plant-soil relationships. 472 (1-2), pp. 421-449. https://doi.org/10.1007/s11104-021-05254-8

Article

First Draft Genome Assemblies of Pleochaeta shiraiana and Phyllactinia moricola, Two Tree-Parasitic Powdery Mildew Fungi with Hemiendophytic Mycelia
Kusch, Stefan, Vaghefi, Niloofar, Takamatsu, Susumu, Liu, Shu-Yan, Nemeth, Mark Z., Seress, Diana, Frantzeskakis, Lamprinos, Chiu, Pin-En, Panstruga, Ralph and Kiss, Levente. 2022. "First Draft Genome Assemblies of Pleochaeta shiraiana and Phyllactinia moricola, Two Tree-Parasitic Powdery Mildew Fungi with Hemiendophytic Mycelia." Phytopathology: International Journal of the American Phytopathological Society. 112 (4), pp. 961-967. https://doi.org/10.1094/PHYTO-08-21-0337-A

Article

NIR sensing and machine learning to rapidly assess crown rot in wheat
Humpal, Jacob, McCarthy, Cheryl, Percy, Cassandra and Thomasson, J. Alex. 2020. "NIR sensing and machine learning to rapidly assess crown rot in wheat." GRDC Grains Research Update: Driving Profit Through Research. Goondiwindi, Australia 03 - 04 Mar 2020 Australia.

Paper

Detection of crown rot in wheat utilising near-infrared spectroscopy: towards remote and robotic sensing
Humpal, Jacob, McCarthy, Cheryl, Percy, Cassy and Thomasson, J. Alex. 2020. "Detection of crown rot in wheat utilising near-infrared spectroscopy: towards remote and robotic sensing." Thomasson, J. Alex and Torres-Rua, Alfonso F. (ed.) Autonomous Air and Ground Sensing Systems for Agricultural Optimization and Phenotyping V (SPIE 2020). Online 27 Apr - 08 May 2020 United States. https://doi.org/10.1117/12.2557949

Paper

Nanoparticle technology for separation of cellulose, hemicellulose and lignin nanoparticles from lignocellulose biomass: A short review
Hamawand, Ihsan, Seneweera, Saman, Kumarasinghe, Pubudu and Bundschuh, Jochen. 2020. "Nanoparticle technology for separation of cellulose, hemicellulose and lignin nanoparticles from lignocellulose biomass: A short review." Nano-Structures and Nano-Objects. 24, pp. 1-5. https://doi.org/10.1016/j.nanoso.2020.100601

Article

Machine vision learning for crop disease and quality parameters
Humpal, Jacob, McCarthy, Cheryl, Thomasson, J. Alex and Percy, Cassy. 2018. "Machine vision learning for crop disease and quality parameters." 21st Precision Agriculture Symposium (2018). Adelaide, Australia Australia.

Presentation

Space Agriculture: Sensing Crops in Space
Humpal, Jacob, McCarthy, Cheryl, Baillie, Craig, Percy, Cassy and Brett, Peter. 2022. "Space Agriculture: Sensing Crops in Space." GRDC Update Papers.

Article

Constitutive and Induced Expression of Total Phenol and Phenol Oxidases in Wheat Genotypes Ranging in Resistance/Susceptibility to the Root-Lesion Nematode Pratylenchus thornei
Rahaman, Md Motiur, Zwart, Rebecca S. and Thompson, John P.. 2020. "Constitutive and Induced Expression of Total Phenol and Phenol Oxidases in Wheat Genotypes Ranging in Resistance/Susceptibility to the Root-Lesion Nematode Pratylenchus thornei." Plants. 9 (4), pp. 1-17. https://doi.org/10.3390/plants9040485

Article

Summer crop disease breakthroughs
Kelly, Lisa, Owen, Kirsty, Sharman, Murray, Vukovic, Peter and Adorada, Dante L.. 2021. "Summer crop disease breakthroughs." GroundCover.

Article

Integrated disease management tools to manage summer crop diseases in the northern region
Adorada, Dante L. and Ryan, Juanita. 2020. Integrated disease management tools to manage summer crop diseases in the northern region. Australia. Grains Research and Development Corporation.

Technical report

The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum
Poudel, Barsha, Purushotham, Neeraj, Jones, Ashley, Nasim, Jamila, Adorada, Dante L., Sparks, Adam H., Schwessinger, Benjamin and Vaghefi, Niloofar. 2022. "The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum." Genome Biology and Evolution. 14 (6), pp. 1-7. https://doi.org/10.1093/gbe/evac081

Article

Magnaporthiopsis species associated with patch diseases of turfgrasses in Australia
Wong, P. T. W., Tan, Y. P., Weese, T. L. and Shivas, R. G.. 2022. "Magnaporthiopsis species associated with patch diseases of turfgrasses in Australia." Mycosphere Online: Journal of Fungal Biology. 13 (1), pp. 602-611. https://doi.org/10.5943/mycosphere/13/1/5

Article

Fusarium and allied fusarioid taxa (FUSA). 1
Crous, P. W., Sandoval-Denis, M., Costa, M. M., Groenewald, J. Z., van Iperen, A. L., Starink-Willemse, M., Hernandez-Restrepo, M., Kandemir, H., Ulaszewski, B., de Boer, W., Abdel-Azeem, A. M., Abdollahzadeh, J., Akulov, A., Bakhshi, M., Bezerra, J. D. P., Bhunjun, C. S., Camara, M. P. S., Chaverri, P., Vieira, W. A. S., ..., Thines, M.. 2022. "Fusarium and allied fusarioid taxa (FUSA). 1." Fungal Systematics and Evolution. 9, pp. 161-200. https://doi.org/10.3114/fuse.2022.09.08

Article

Value Proposition of Different Methods for Utilisation of Sugarcane Wastes
Hamawand, Ihsan, da Silva, Wilton, Seneweera, Saman and Bundschuh, Jochen. 2021. "Value Proposition of Different Methods for Utilisation of Sugarcane Wastes." Energies. 14 (17), pp. 1-31. https://doi.org/10.3390/en14175483

Article

Thiolated arsenic in natural systems: What is current, what is new and what needs to be known
Herath, Indika, Vithanage, Meththika, Seneweera, Saman and Bundschuh, Jochen. 2018. "Thiolated arsenic in natural systems: What is current, what is new and what needs to be known." Environment International. 115, pp. 370-386. https://doi.org/10.1016/j.envint.2018.03.027

Article

Carbon dioxide (CO2) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries
Zhu, Chunwu, Kobayashi, Kazuhiko, Loladze, Irakli, Zhu, Jianguo, Jiang, Qian, Xu, Xi, Liu, Gang, Seneweera, Saman, Ebi, Kristie L., Drewnowski, Adam, Fukagawa, Naomi K. and Ziska, Lewis H.. 2018. "Carbon dioxide (CO2) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries." Science Advances. 4 (5), pp. 1-8. https://doi.org/10.1126/sciadv.aaq1012

Article

Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain
Perera, Ishara, Fukushima, Ayaka, Akabane, Tatsuki, Horiguchi, Genki, Seneweera, Saman and Hirotsu, Naoki. 2019. "Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain." Scientific Reports. 9, pp. 1-11. https://doi.org/10.1038/s41598-019-51485-2

Article

Lower grain nitrogen content of wheat at elevated CO2 can be improved through post-anthesis NH4+ supplement
Fernando, Nimesha, Hirotsu, Naoki, Panozzo, Joe, Tausz, Michael, Norton, Robert M. and Seneweera, Saman. 2017. "Lower grain nitrogen content of wheat at elevated CO2 can be improved through post-anthesis NH4+ supplement." Journal of Cereal Science. 74, pp. 79-85. https://doi.org/10.1016/j.jcs.2017.01.009

Article