Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain

Article

Perera, Ishara, Fukushima, Ayaka, Akabane, Tatsuki, Horiguchi, Genki, Seneweera, Saman and Hirotsu, Naoki. 2019. "Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain." Scientific Reports. 9, pp. 1-11. https://doi.org/10.1038/s41598-019-51485-2
Article Title

Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain

ERA Journal ID201487
Article CategoryArticle
AuthorsPerera, Ishara (Author), Fukushima, Ayaka (Author), Akabane, Tatsuki (Author), Horiguchi, Genki (Author), Seneweera, Saman (Author) and Hirotsu, Naoki (Author)
Journal TitleScientific Reports
Journal Citation9, pp. 1-11
Article Number14866
Number of Pages11
Year2019
PublisherNature Publishing Group
Place of PublicationUnited Kingdom
ISSN2045-2322
Digital Object Identifier (DOI)https://doi.org/10.1038/s41598-019-51485-2
Web Address (URL)https://www.nature.com/articles/s41598-019-51485-2
Abstract

Phytic acid (PA) is the primary phosphorus (P) storage compound in the seeds of cereals and legumes. Low PA crops, which are considered an effective way to improve grain nutrient availability and combat environmental issues relating to seed P have been developed using mutational and reverse genetics approaches. Here, we identify molecular mechanism regulating PA content among natural rice variants. First, we performed genome-wide association (GWA) mapping of world rice core collection (WRC) accessions to understand the genetic determinants underlying PA trait in rice. Further, a comparative study was undertaken to identify the differences in PA accumulation, protein profiles, and gene expression in low (WRC 5) and high PA (WRC 6) accessions. GWA results identified myo-inositol 3-phosphate synthase 1 (INO1) as being closely localized to a significant single nucleotide polymorphism. We found high rates of PA accumulation 10 days after flowering, and our results indicate that INO1 expression was significantly higher in WRC 6 than in WRC 5. Seed proteome assays found that the expression of INO1 was significantly higher in WRC 6. These results suggest that not only the gene itself but regulation of INO1 gene expression at early developmental stages is important in determining PA content in rice.

KeywordsChromosome Mapping; Edible Grain; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genome, Plant; Genome-Wide Association Study; Inositol Phosphates; Intramolecular Lyases; Oryza; Phytic Acid; Plant Proteins; Polymorphism, Single Nucleotide; Quantitative Trait, Heritable; Seeds
ANZSRC Field of Research 2020300404. Crop and pasture biochemistry and physiology
Byline AffiliationsToyo University, Japan
Centre for Crop Health
Institution of OriginUniversity of Southern Queensland
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Myers, Samuel S., Zanobetti, Antonella, Kloog, Itai, Huybers, Peter, Leakey, Andrew D. B., Bloom, Arnold, Carlisle, Eli, Dietterich, Lee H., Fitzgerald, Glenn, Hasegawa, Toshihiro, Holbrook, N. Michele, Nelson, Randall L., Ottman, Michael J., Raboy, Victor, Sakai, Hidemitsu, Sartor, Karla A., Schwartz, Joel, Seneweera, Saman, Tausz, Michael and Usui, Yasuhiro. 2014. "Increasing CO2 threatens human nutrition." Nature. 510 (7503), pp. 139-142. https://doi.org/10.1038/nature13179
Does a freely tillering wheat cultivar benefit more from elevated CO2 than a restricted tillering cultivar in a water-limited environment?
Tausz-Posch, Sabine, Dempsey, Raymond W., Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn and Tausz, Michael. 2015. "Does a freely tillering wheat cultivar benefit more from elevated CO2 than a restricted tillering cultivar in a water-limited environment?" European Journal of Agronomy. 64, pp. 21-28. https://doi.org/10.1016/j.eja.2014.12.009
Intraspecific variation in growth and yield response to elevated CO2 in wheat depends on the differences of leaf mass per unit area
Thilakarathne, Chamindathee L., Tausz-Posch, Sabine, Cane, Karen, Norton, Robert M., Tausz, Michael and Seneweera, Saman. 2013. "Intraspecific variation in growth and yield response to elevated CO2 in wheat depends on the differences of leaf mass per unit area ." Functional Plant Biology: an international journal of plant function. 40 (2), pp. 185-194. https://doi.org/10.1071/FP12057
Effect of fertilization on forage yield and quality, nutrients uptake and soil properties in the more intensive cropping system
Li, Wen Xi, Lu, Jian Wei, Seneweera, Saman P., Chen, Fang, Lu, Jun Ming and Li, Xiao Kun. 2010. "Effect of fertilization on forage yield and quality, nutrients uptake and soil properties in the more intensive cropping system ." Journal of Food, Agriculture and Environment. 8 (2), pp. 427-434.
Release of antimicrobial peptides through bromelain hydrolysis of leatherjacket (Meuchenia sp.) insoluble proteins
Salampessy, Junus, Phillips, Michael, Seneweera, Saman and Kailasapathy, Kasipathy. 2010. "Release of antimicrobial peptides through bromelain hydrolysis of leatherjacket (Meuchenia sp.) insoluble proteins ." Food Chemistry. 120 (2), pp. 556-560. https://doi.org/10.1016/j.foodchem.2009.10.054
Microencapsulated enzymes from Aspergillus oryzae accelerate cheddar cheese ripening and enrich biologically active peptide profile
Seneweera, Saman and Kailasapathy, Kasipathy. 2010. "Microencapsulated enzymes from Aspergillus oryzae accelerate cheddar cheese ripening and enrich biologically active peptide profile ." Australian Journal of Dairy Technology. 65 (3), pp. 174-177.
Reduced nitrogen allocation to expanding leaf blades suppresses ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis and leads to photosynthetic acclimation to elevated CO2 in rice
Seneweera, S.. 2011. "Reduced nitrogen allocation to expanding leaf blades suppresses ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis and leads to photosynthetic acclimation to elevated CO2 in rice ." Photosynthetica. 49 (1), pp. 145-148. https://doi.org/10.1007/s11099-011-0006-2
Effects of elevated CO2 on plant growth and nutrient partitioning of rice (Oryza sativa L.) at rapid tillering and physiological maturity
Seneweera, Saman. 2011. "Effects of elevated CO2 on plant growth and nutrient partitioning of rice (Oryza sativa L.) at rapid tillering and physiological maturity ." Journal of Plant Interactions. 6 (1), pp. 35-42. https://doi.org/10.1080/17429145.2010.513483
New insight into photosynthetic acclimation to elevated CO2: the role of leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase content in rice leaves
Seneweera, Saman, Makino, Amane, Hirotsu, Naoki, Norton, Robert and Suzuki, Yuji. 2011. "New insight into photosynthetic acclimation to elevated CO2: the role of leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase content in rice leaves ." Environmental and Experimental Botany. 71 (2), pp. 128-136. https://doi.org/10.1016/j.envexpbot.2010.11.002
Impact of microencapsulated peptidase (Aspergillus oryzae) on cheddar cheese proteolysis and its biologically active peptide profile
Seneweera, Saman and Kailasapathy, Kaila. 2011. "Impact of microencapsulated peptidase (Aspergillus oryzae) on cheddar cheese proteolysis and its biologically active peptide profile ." Protein and Peptide Letters: international journal for rapid publication of short papers in protein and peptide science. 18 (7), pp. 741-746. https://doi.org/10.2174/092986611795446076
Effect of elevated carbon dioxide on growth and nitrogen fixation of two soybean cultivars in northern China
Lam, Shu Kee, Hao, Xingyu, Lin, Erda, Han, Xue, Norton, Rob, Mosier, Arvin R., Seneweera, Saman and Chen, Deli. 2012. "Effect of elevated carbon dioxide on growth and nitrogen fixation of two soybean cultivars in northern China ." Biology and Fertility of Soils. 48 (5), pp. 603-606. https://doi.org/10.1007/s00374-011-0648-z
Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?
Tausz-Posch, Sabine, Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn J. and Tausz, Michael. 2012. "Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?" Field Crops Research. 133, pp. 160-166. https://doi.org/10.1016/j.fcr.2012.04.007
Improving yield potential in crops under elevated CO2: integrating the photosynthetic and nitrogen utilization efficiencies
Kant, Surya, Seneweera, Saman, Rodin, Joakim, Materne, Michael, Burch, David, Rothstein, Steven J. and Spangenberg, German. 2012. "Improving yield potential in crops under elevated CO2: integrating the photosynthetic and nitrogen utilization efficiencies ." Frontiers in Plant Science. 3, pp. 1-9. https://doi.org/10.3389/fpls.2012.00162
Rising atmospheric CO2 concentration affects mineral nutrient and protein concentration of wheat grain
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert, Fitzgerald, Glenn and Seneweera, Saman. 2012. "Rising atmospheric CO2 concentration affects mineral nutrient and protein concentration of wheat grain." Food Chemistry. 133 (4), pp. 1307-1311. https://doi.org/10.1016/j.foodchem.2012.01.105
Wheat grain quality under increasing atmospheric CO2 concentrations in a semi-arid cropping system
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Walker, Cassandra, Stangoulis, James and Seneweera, Saman. 2012. "Wheat grain quality under increasing atmospheric CO2 concentrations in a semi-arid cropping system ." Journal of Cereal Science. 56 (3), pp. 684-690. https://doi.org/10.1016/j.jcs.2012.07.010
Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations
Tausz, Michael, Tausz-Posch, Sabine, Norton, Robert M., Fitzgerald, Glenn J., Nicolas, Marc E. and Seneweera, Saman. 2013. "Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations ." Environmental and Experimental Botany. 88, pp. 71-80. https://doi.org/10.1016/j.envexpbot.2011.12.005
The effect of elevated CO2 on photochemistry and antioxidative defence capacity in wheat depends on environmental growing conditions: a FACE study
Tausz-Posch, Sabine, Borowiak, Klaudia, Dempsey, Raymond W., Norton, Robert M., Seneweera, Saman, Fitzgerald, Glenn J. and Tausz, Michael. 2013. "The effect of elevated CO2 on photochemistry and antioxidative defence capacity in wheat depends on environmental growing conditions: a FACE study." Environmental and Experimental Botany. 88, pp. 81-92. https://doi.org/10.1016/j.envexpbot.2011.12.002
Will intra-specific differences in transpiration efficiency in wheat be maintained in a high CO2 world? A FACE study
Tausz-Posch, Sabine, Norton, Robert M., Seneweera, Saman, Fitzgerald, Glenn J. and Tausz, Michael. 2013. "Will intra-specific differences in transpiration efficiency in wheat be maintained in a high CO2 world? A FACE study." Physiologia Plantarum. 148 (2), pp. 232-245. https://doi.org/10.1111/j.1399-3054.2012.01701.x
Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Nicolas, Marc E. and Seneweera, Saman. 2014. "Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments." Journal of Cereal Science. 59 (2), pp. 137-144. https://doi.org/10.1016/j.jcs.2013.12.002
Elevated CO2 alters grain quality of two bread wheat cultivars grown under different environmental conditions
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Neumann, Nathan, Fitzgerald, Glenn J. and Seneweera, Saman. 2014. "Elevated CO2 alters grain quality of two bread wheat cultivars grown under different environmental conditions." Agriculture, Ecosystems and Environment. 185, pp. 24-33. https://doi.org/10.1016/j.agee.2013.11.023