Development of a mini core collection from Sri Lankan traditional rice for flowering time variation

Article

Rathnathunga, Udari, Senanayake, Gamini, Dissanayake, Nimal, Seneweera, Saman and Geekiyanage, Sudarshanee. 2016. "Development of a mini core collection from Sri Lankan traditional rice for flowering time variation." Australian Journal of Crop Science. 10 (9), pp. 1357-1367. https://doi.org/10.21475/ajcs.2016.10.09.p7865
Article Title

Development of a mini core collection from Sri Lankan traditional rice for flowering time variation

ERA Journal ID44764
Article CategoryArticle
AuthorsRathnathunga, Udari (Author), Senanayake, Gamini (Author), Dissanayake, Nimal (Author), Seneweera, Saman (Author) and Geekiyanage, Sudarshanee (Author)
Journal TitleAustralian Journal of Crop Science
Journal Citation10 (9), pp. 1357-1367
Number of Pages11
Year2016
PublisherSouthern Cross Journals
Place of PublicationAustralia
ISSN1835-2693
1835-2707
Digital Object Identifier (DOI)https://doi.org/10.21475/ajcs.2016.10.09.p7865
Web Address (URL)http://www.cropj.com/rathnathunga_10_9_2016_1357_1367.pdf
Abstract

Sri Lankan traditional rice germplasm (Oryza sativa indica) consists of a wide variety of morphology and days to flowering (DF). The objective of this research was to develop a mini core collection representing the DF variation of the total collection. Three hundred and eighty four rice accessions from 53 Sri Lankan traditional rice varieties were evaluated for morphological and flowering time variation. The experiment was carried at Rice Research and Development Institute, Bathalagoda, Sri Lanka during the late short day season (Maha), 2012/2013.Three hundred and forty five accessions flowered and 39 accessions did not flower during the experimental period of 210 days. Two principal component analyses (PCA) were performed and subsequently 2 dendograms were developed for flowered and not flowered accessions. Sixty eight percent of total observed variation was explained through 6 principal components (PC’s) by DF and fourteen quantitative morphological characters of 345 flowered accessions. Seventy nine percent of total observed variation of not flowered 39 accessions was explained through 4 PC’s by 9 quantitative morphological characters. Ninety accessions were selected from 2 dendograms for development of a mini core collection; out of which 85 accessions represented flowered accessions based on minimum and maximum DF variation in each cluster of the dendogram. Five randomly selected accessions represented each cluster of not flowered accessions. Minimum and maximum DF values of both total collection and mini core collection were 56 and 189 days, respectively. Average DF of total flowered collection and mini core collection was 79.16 ± 0.95 and 87.95 ± 3.1, respectively. A similar trend in the regression relationship between DF and plant height and, DF and leaf length of the leaf prior to flag leaf was observed in total flowered collection and mini core collection, indicating the representation of mini core collection for flowering time variation.

Keywordsdays to flowering, Oryza sativa, morphological characters, varietal diversity
ANZSRC Field of Research 2020310114. Systems biology
300406. Crop and pasture improvement (incl. selection and breeding)
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Byline AffiliationsUniversity of Ruhuna, Sri Lanka
International Rice Research Institute, India
Centre for Systems Biology
Institution of OriginUniversity of Southern Queensland
Funding source
Grant ID
NRC
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Does a freely tillering wheat cultivar benefit more from elevated CO2 than a restricted tillering cultivar in a water-limited environment?
Tausz-Posch, Sabine, Dempsey, Raymond W., Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn and Tausz, Michael. 2015. "Does a freely tillering wheat cultivar benefit more from elevated CO2 than a restricted tillering cultivar in a water-limited environment?" European Journal of Agronomy. 64, pp. 21-28. https://doi.org/10.1016/j.eja.2014.12.009
Intraspecific variation in growth and yield response to elevated CO2 in wheat depends on the differences of leaf mass per unit area
Thilakarathne, Chamindathee L., Tausz-Posch, Sabine, Cane, Karen, Norton, Robert M., Tausz, Michael and Seneweera, Saman. 2013. "Intraspecific variation in growth and yield response to elevated CO2 in wheat depends on the differences of leaf mass per unit area ." Functional Plant Biology: an international journal of plant function. 40 (2), pp. 185-194. https://doi.org/10.1071/FP12057
Effect of fertilization on forage yield and quality, nutrients uptake and soil properties in the more intensive cropping system
Li, Wen Xi, Lu, Jian Wei, Seneweera, Saman P., Chen, Fang, Lu, Jun Ming and Li, Xiao Kun. 2010. "Effect of fertilization on forage yield and quality, nutrients uptake and soil properties in the more intensive cropping system ." Journal of Food, Agriculture and Environment. 8 (2), pp. 427-434.
Release of antimicrobial peptides through bromelain hydrolysis of leatherjacket (Meuchenia sp.) insoluble proteins
Salampessy, Junus, Phillips, Michael, Seneweera, Saman and Kailasapathy, Kasipathy. 2010. "Release of antimicrobial peptides through bromelain hydrolysis of leatherjacket (Meuchenia sp.) insoluble proteins ." Food Chemistry. 120 (2), pp. 556-560. https://doi.org/10.1016/j.foodchem.2009.10.054
Microencapsulated enzymes from Aspergillus oryzae accelerate cheddar cheese ripening and enrich biologically active peptide profile
Seneweera, Saman and Kailasapathy, Kasipathy. 2010. "Microencapsulated enzymes from Aspergillus oryzae accelerate cheddar cheese ripening and enrich biologically active peptide profile ." Australian Journal of Dairy Technology. 65 (3), pp. 174-177.
Reduced nitrogen allocation to expanding leaf blades suppresses ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis and leads to photosynthetic acclimation to elevated CO2 in rice
Seneweera, S.. 2011. "Reduced nitrogen allocation to expanding leaf blades suppresses ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis and leads to photosynthetic acclimation to elevated CO2 in rice ." Photosynthetica. 49 (1), pp. 145-148. https://doi.org/10.1007/s11099-011-0006-2
Effects of elevated CO2 on plant growth and nutrient partitioning of rice (Oryza sativa L.) at rapid tillering and physiological maturity
Seneweera, Saman. 2011. "Effects of elevated CO2 on plant growth and nutrient partitioning of rice (Oryza sativa L.) at rapid tillering and physiological maturity ." Journal of Plant Interactions. 6 (1), pp. 35-42. https://doi.org/10.1080/17429145.2010.513483
New insight into photosynthetic acclimation to elevated CO2: the role of leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase content in rice leaves
Seneweera, Saman, Makino, Amane, Hirotsu, Naoki, Norton, Robert and Suzuki, Yuji. 2011. "New insight into photosynthetic acclimation to elevated CO2: the role of leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase content in rice leaves ." Environmental and Experimental Botany. 71 (2), pp. 128-136. https://doi.org/10.1016/j.envexpbot.2010.11.002
Impact of microencapsulated peptidase (Aspergillus oryzae) on cheddar cheese proteolysis and its biologically active peptide profile
Seneweera, Saman and Kailasapathy, Kaila. 2011. "Impact of microencapsulated peptidase (Aspergillus oryzae) on cheddar cheese proteolysis and its biologically active peptide profile ." Protein and Peptide Letters: international journal for rapid publication of short papers in protein and peptide science. 18 (7), pp. 741-746. https://doi.org/10.2174/092986611795446076
Effect of elevated carbon dioxide on growth and nitrogen fixation of two soybean cultivars in northern China
Lam, Shu Kee, Hao, Xingyu, Lin, Erda, Han, Xue, Norton, Rob, Mosier, Arvin R., Seneweera, Saman and Chen, Deli. 2012. "Effect of elevated carbon dioxide on growth and nitrogen fixation of two soybean cultivars in northern China ." Biology and Fertility of Soils. 48 (5), pp. 603-606. https://doi.org/10.1007/s00374-011-0648-z
Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?
Tausz-Posch, Sabine, Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn J. and Tausz, Michael. 2012. "Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?" Field Crops Research. 133, pp. 160-166. https://doi.org/10.1016/j.fcr.2012.04.007
Improving yield potential in crops under elevated CO2: integrating the photosynthetic and nitrogen utilization efficiencies
Kant, Surya, Seneweera, Saman, Rodin, Joakim, Materne, Michael, Burch, David, Rothstein, Steven J. and Spangenberg, German. 2012. "Improving yield potential in crops under elevated CO2: integrating the photosynthetic and nitrogen utilization efficiencies ." Frontiers in Plant Science. 3, pp. 1-9. https://doi.org/10.3389/fpls.2012.00162
Rising atmospheric CO2 concentration affects mineral nutrient and protein concentration of wheat grain
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert, Fitzgerald, Glenn and Seneweera, Saman. 2012. "Rising atmospheric CO2 concentration affects mineral nutrient and protein concentration of wheat grain." Food Chemistry. 133 (4), pp. 1307-1311. https://doi.org/10.1016/j.foodchem.2012.01.105
Wheat grain quality under increasing atmospheric CO2 concentrations in a semi-arid cropping system
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Walker, Cassandra, Stangoulis, James and Seneweera, Saman. 2012. "Wheat grain quality under increasing atmospheric CO2 concentrations in a semi-arid cropping system ." Journal of Cereal Science. 56 (3), pp. 684-690. https://doi.org/10.1016/j.jcs.2012.07.010
Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations
Tausz, Michael, Tausz-Posch, Sabine, Norton, Robert M., Fitzgerald, Glenn J., Nicolas, Marc E. and Seneweera, Saman. 2013. "Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations ." Environmental and Experimental Botany. 88, pp. 71-80. https://doi.org/10.1016/j.envexpbot.2011.12.005
The effect of elevated CO2 on photochemistry and antioxidative defence capacity in wheat depends on environmental growing conditions: a FACE study
Tausz-Posch, Sabine, Borowiak, Klaudia, Dempsey, Raymond W., Norton, Robert M., Seneweera, Saman, Fitzgerald, Glenn J. and Tausz, Michael. 2013. "The effect of elevated CO2 on photochemistry and antioxidative defence capacity in wheat depends on environmental growing conditions: a FACE study." Environmental and Experimental Botany. 88, pp. 81-92. https://doi.org/10.1016/j.envexpbot.2011.12.002
Will intra-specific differences in transpiration efficiency in wheat be maintained in a high CO2 world? A FACE study
Tausz-Posch, Sabine, Norton, Robert M., Seneweera, Saman, Fitzgerald, Glenn J. and Tausz, Michael. 2013. "Will intra-specific differences in transpiration efficiency in wheat be maintained in a high CO2 world? A FACE study." Physiologia Plantarum. 148 (2), pp. 232-245. https://doi.org/10.1111/j.1399-3054.2012.01701.x
Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Nicolas, Marc E. and Seneweera, Saman. 2014. "Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments." Journal of Cereal Science. 59 (2), pp. 137-144. https://doi.org/10.1016/j.jcs.2013.12.002
Elevated CO2 alters grain quality of two bread wheat cultivars grown under different environmental conditions
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Neumann, Nathan, Fitzgerald, Glenn J. and Seneweera, Saman. 2014. "Elevated CO2 alters grain quality of two bread wheat cultivars grown under different environmental conditions." Agriculture, Ecosystems and Environment. 185, pp. 24-33. https://doi.org/10.1016/j.agee.2013.11.023