The chromosome regions for increasing early growth in rice: role of sucrose biosynthesis and NH4+ uptake

Article

Nagai, Yuki, Matsumoto, Kouichi, Kakinuma, Yuri, Ujiie, Kazuhiro, Ishimaru, Ken, Gamage, Dananjali M., Thompson, Michael, Milham, Paul, Seneweera, Saman and Hirotsu, Naoki. 2016. "The chromosome regions for increasing early growth in rice: role of sucrose biosynthesis and NH4+ uptake." Euphytica: international journal on plant breeding. 211 (3), pp. 343-352. https://doi.org/10.1007/s10681-016-1743-x
Article Title

The chromosome regions for increasing early growth in rice: role of sucrose biosynthesis and NH4+ uptake

ERA Journal ID5306
Article CategoryArticle
AuthorsNagai, Yuki (Author), Matsumoto, Kouichi (Author), Kakinuma, Yuri (Author), Ujiie, Kazuhiro (Author), Ishimaru, Ken (Author), Gamage, Dananjali M. (Author), Thompson, Michael (Author), Milham, Paul (Author), Seneweera, Saman (Author) and Hirotsu, Naoki (Author)
Journal TitleEuphytica: international journal on plant breeding
Journal Citation211 (3), pp. 343-352
Number of Pages10
Year2016
PublisherSpringer
Place of PublicationNetherlands
ISSN0014-2336
1573-5060
Digital Object Identifier (DOI)https://doi.org/10.1007/s10681-016-1743-x
Web Address (URL)http://link.springer.com/content/pdf/10.1007%2Fs10681-016-1743-x.pdf
Abstract

To elucidate the mechanism of plant growth we investigated chromosome region affecting traits (CRATs) using the chromosome segment substitution lines derived from a cross between japonica ‘Koshihikari’ and indica ‘Kasalath’ using rice (Oryza sativa L.). Four CRATs associated with increased plant growth rate were identified which were derived from ‘Kasalath’ alleles on chromosomes 1, 6, 8 and 12. This was achieved by evaluating the net dry weight gain from seed germination to 30 day-old seedlings. Physiological analysis of substitution lines containing a ‘Kasalath’ allele chromosome segment in the ‘Koshihikari’ background revealed that the CRAT on chromosome 1 (EGR1 ) increased the relative growth rate by increasing the net assimilation rate (NAR), and increased expression of the OsSPS1 gene that encodes the rate-limiting enzyme in sucrose synthesis. In contrast, CRATs on chromosomes 6, 8 and 12 (EGR6 , EGR8 and EGR12 ) were associated with an increased uptake of NH4+, the major nitrogen source for rice. These results suggest that early growth of rice is controlled by multiple traits and sucrose biosynthesis and NH4+ uptake play key roles.

KeywordsQuantitative trait locus (QTL); rice; growth analysis; sucrose phosphate synthase; nitrogen uptake; seedling growth
ANZSRC Field of Research 2020300406. Crop and pasture improvement (incl. selection and breeding)
300402. Agro-ecosystem function and prediction
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Byline AffiliationsToyo University, Japan
National Institute of Agrobiological Sciences, Japan
Centre for Crop Health
University of Western Sydney
Institution of OriginUniversity of Southern Queensland
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Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert, Fitzgerald, Glenn, Khan, Alamgir and Seneweera, Saman. 2015. "Rising CO2 concentration altered wheat grain proteome and flour rheological characteristics." Food Chemistry. 170, pp. 448-454. https://doi.org/10.1016/j.foodchem.2014.07.044
Intraspecific variation in leaf growth of wheat (Triticum aestivum) under Australian Grain Free Air CO2 Enrichment (AGFACE): Is it regulated through carbon and/or nitrogen supply?
Thilakarathne, Chamindathee L., Tausz-Posch, Sabine, Cane, Karen, Norton, Robert M., Fitzgerald, Glenn J., Tausz, Michael and Seneweera, Saman. 2015. "Intraspecific variation in leaf growth of wheat (Triticum aestivum) under Australian Grain Free Air CO2 Enrichment (AGFACE): Is it regulated through carbon and/or nitrogen supply?" Functional Plant Biology: an international journal of plant function. 42 (3), pp. 299-308. https://doi.org/10.1071/FP14125
Increasing CO2 threatens human nutrition
Myers, Samuel S., Zanobetti, Antonella, Kloog, Itai, Huybers, Peter, Leakey, Andrew D. B., Bloom, Arnold, Carlisle, Eli, Dietterich, Lee H., Fitzgerald, Glenn, Hasegawa, Toshihiro, Holbrook, N. Michele, Nelson, Randall L., Ottman, Michael J., Raboy, Victor, Sakai, Hidemitsu, Sartor, Karla A., Schwartz, Joel, Seneweera, Saman, Tausz, Michael and Usui, Yasuhiro. 2014. "Increasing CO2 threatens human nutrition." Nature. 510 (7503), pp. 139-142. https://doi.org/10.1038/nature13179
Does a freely tillering wheat cultivar benefit more from elevated CO2 than a restricted tillering cultivar in a water-limited environment?
Tausz-Posch, Sabine, Dempsey, Raymond W., Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn and Tausz, Michael. 2015. "Does a freely tillering wheat cultivar benefit more from elevated CO2 than a restricted tillering cultivar in a water-limited environment?" European Journal of Agronomy. 64, pp. 21-28. https://doi.org/10.1016/j.eja.2014.12.009
Intraspecific variation in growth and yield response to elevated CO2 in wheat depends on the differences of leaf mass per unit area
Thilakarathne, Chamindathee L., Tausz-Posch, Sabine, Cane, Karen, Norton, Robert M., Tausz, Michael and Seneweera, Saman. 2013. "Intraspecific variation in growth and yield response to elevated CO2 in wheat depends on the differences of leaf mass per unit area ." Functional Plant Biology: an international journal of plant function. 40 (2), pp. 185-194. https://doi.org/10.1071/FP12057
Effect of fertilization on forage yield and quality, nutrients uptake and soil properties in the more intensive cropping system
Li, Wen Xi, Lu, Jian Wei, Seneweera, Saman P., Chen, Fang, Lu, Jun Ming and Li, Xiao Kun. 2010. "Effect of fertilization on forage yield and quality, nutrients uptake and soil properties in the more intensive cropping system ." Journal of Food, Agriculture and Environment. 8 (2), pp. 427-434.
Release of antimicrobial peptides through bromelain hydrolysis of leatherjacket (Meuchenia sp.) insoluble proteins
Salampessy, Junus, Phillips, Michael, Seneweera, Saman and Kailasapathy, Kasipathy. 2010. "Release of antimicrobial peptides through bromelain hydrolysis of leatherjacket (Meuchenia sp.) insoluble proteins ." Food Chemistry. 120 (2), pp. 556-560. https://doi.org/10.1016/j.foodchem.2009.10.054
Microencapsulated enzymes from Aspergillus oryzae accelerate cheddar cheese ripening and enrich biologically active peptide profile
Seneweera, Saman and Kailasapathy, Kasipathy. 2010. "Microencapsulated enzymes from Aspergillus oryzae accelerate cheddar cheese ripening and enrich biologically active peptide profile ." Australian Journal of Dairy Technology. 65 (3), pp. 174-177.
Reduced nitrogen allocation to expanding leaf blades suppresses ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis and leads to photosynthetic acclimation to elevated CO2 in rice
Seneweera, S.. 2011. "Reduced nitrogen allocation to expanding leaf blades suppresses ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis and leads to photosynthetic acclimation to elevated CO2 in rice ." Photosynthetica. 49 (1), pp. 145-148. https://doi.org/10.1007/s11099-011-0006-2
Effects of elevated CO2 on plant growth and nutrient partitioning of rice (Oryza sativa L.) at rapid tillering and physiological maturity
Seneweera, Saman. 2011. "Effects of elevated CO2 on plant growth and nutrient partitioning of rice (Oryza sativa L.) at rapid tillering and physiological maturity ." Journal of Plant Interactions. 6 (1), pp. 35-42. https://doi.org/10.1080/17429145.2010.513483
New insight into photosynthetic acclimation to elevated CO2: the role of leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase content in rice leaves
Seneweera, Saman, Makino, Amane, Hirotsu, Naoki, Norton, Robert and Suzuki, Yuji. 2011. "New insight into photosynthetic acclimation to elevated CO2: the role of leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase content in rice leaves ." Environmental and Experimental Botany. 71 (2), pp. 128-136. https://doi.org/10.1016/j.envexpbot.2010.11.002
Impact of microencapsulated peptidase (Aspergillus oryzae) on cheddar cheese proteolysis and its biologically active peptide profile
Seneweera, Saman and Kailasapathy, Kaila. 2011. "Impact of microencapsulated peptidase (Aspergillus oryzae) on cheddar cheese proteolysis and its biologically active peptide profile ." Protein and Peptide Letters: international journal for rapid publication of short papers in protein and peptide science. 18 (7), pp. 741-746. https://doi.org/10.2174/092986611795446076
Effect of elevated carbon dioxide on growth and nitrogen fixation of two soybean cultivars in northern China
Lam, Shu Kee, Hao, Xingyu, Lin, Erda, Han, Xue, Norton, Rob, Mosier, Arvin R., Seneweera, Saman and Chen, Deli. 2012. "Effect of elevated carbon dioxide on growth and nitrogen fixation of two soybean cultivars in northern China ." Biology and Fertility of Soils. 48 (5), pp. 603-606. https://doi.org/10.1007/s00374-011-0648-z
Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?
Tausz-Posch, Sabine, Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn J. and Tausz, Michael. 2012. "Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?" Field Crops Research. 133, pp. 160-166. https://doi.org/10.1016/j.fcr.2012.04.007
Improving yield potential in crops under elevated CO2: integrating the photosynthetic and nitrogen utilization efficiencies
Kant, Surya, Seneweera, Saman, Rodin, Joakim, Materne, Michael, Burch, David, Rothstein, Steven J. and Spangenberg, German. 2012. "Improving yield potential in crops under elevated CO2: integrating the photosynthetic and nitrogen utilization efficiencies ." Frontiers in Plant Science. 3, pp. 1-9. https://doi.org/10.3389/fpls.2012.00162
Rising atmospheric CO2 concentration affects mineral nutrient and protein concentration of wheat grain
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert, Fitzgerald, Glenn and Seneweera, Saman. 2012. "Rising atmospheric CO2 concentration affects mineral nutrient and protein concentration of wheat grain." Food Chemistry. 133 (4), pp. 1307-1311. https://doi.org/10.1016/j.foodchem.2012.01.105
Wheat grain quality under increasing atmospheric CO2 concentrations in a semi-arid cropping system
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Walker, Cassandra, Stangoulis, James and Seneweera, Saman. 2012. "Wheat grain quality under increasing atmospheric CO2 concentrations in a semi-arid cropping system ." Journal of Cereal Science. 56 (3), pp. 684-690. https://doi.org/10.1016/j.jcs.2012.07.010
Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations
Tausz, Michael, Tausz-Posch, Sabine, Norton, Robert M., Fitzgerald, Glenn J., Nicolas, Marc E. and Seneweera, Saman. 2013. "Understanding crop physiology to select breeding targets and improve crop management under increasing atmospheric CO2 concentrations ." Environmental and Experimental Botany. 88, pp. 71-80. https://doi.org/10.1016/j.envexpbot.2011.12.005
The effect of elevated CO2 on photochemistry and antioxidative defence capacity in wheat depends on environmental growing conditions: a FACE study
Tausz-Posch, Sabine, Borowiak, Klaudia, Dempsey, Raymond W., Norton, Robert M., Seneweera, Saman, Fitzgerald, Glenn J. and Tausz, Michael. 2013. "The effect of elevated CO2 on photochemistry and antioxidative defence capacity in wheat depends on environmental growing conditions: a FACE study." Environmental and Experimental Botany. 88, pp. 81-92. https://doi.org/10.1016/j.envexpbot.2011.12.002
Will intra-specific differences in transpiration efficiency in wheat be maintained in a high CO2 world? A FACE study
Tausz-Posch, Sabine, Norton, Robert M., Seneweera, Saman, Fitzgerald, Glenn J. and Tausz, Michael. 2013. "Will intra-specific differences in transpiration efficiency in wheat be maintained in a high CO2 world? A FACE study." Physiologia Plantarum. 148 (2), pp. 232-245. https://doi.org/10.1111/j.1399-3054.2012.01701.x
Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Fitzgerald, Glenn J., Myers, Samuel, Nicolas, Marc E. and Seneweera, Saman. 2014. "Intra-specific variation of wheat grain quality in response to elevated [CO2] at two sowing times under rain-fed and irrigation treatments." Journal of Cereal Science. 59 (2), pp. 137-144. https://doi.org/10.1016/j.jcs.2013.12.002
Elevated CO2 alters grain quality of two bread wheat cultivars grown under different environmental conditions
Fernando, Nimesha, Panozzo, Joe, Tausz, Michael, Norton, Robert M., Neumann, Nathan, Fitzgerald, Glenn J. and Seneweera, Saman. 2014. "Elevated CO2 alters grain quality of two bread wheat cultivars grown under different environmental conditions." Agriculture, Ecosystems and Environment. 185, pp. 24-33. https://doi.org/10.1016/j.agee.2013.11.023