Centre for Crop Health


Latest research outputs

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An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres
El-Mor, Iman, Fowler, Ryan, Platz, Greg, Sutherland, Mark and Martin, Anke. 2018. "An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres." Plant Disease: an international journal of applied plant pathology. 102 (4), pp. 760-763. https://doi.org/10.1094/PDIS-07-17-0980-RE

Article

An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum
Kelly, Alison, Macdonald, Bethany, Percy, Cassandra and Davies, Philip. 2021. "An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum." Journal of Phytopathology. 169 (6), pp. 339-349. https://doi.org/10.1111/jph.12970

Article

An integrated approach of rice hull biochar-alternative water management as a promising tool to decrease inorganic arsenic levels and to sustain essential element contents in rice
Kumarathilaka, Prasanna, Bundschuh, Jochen, Seneweera, Saman and Ok, Yong Sik. 2021. "An integrated approach of rice hull biochar-alternative water management as a promising tool to decrease inorganic arsenic levels and to sustain essential element contents in rice." Journal of Hazardous Materials. 405, pp. 1-9. https://doi.org/10.1016/j.jhazmat.2020.124188

Article

An international perspective on genetic structure and gene flow in Cercospora beticola populations
Knight, N. L., Vaghefi, N., Kikkert, J., Bolton, M. D., Secor, G. A., Hanson, L., Nelson, S. C. and Pethybridge, S. J.. 2018. "An international perspective on genetic structure and gene flow in Cercospora beticola populations." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States. American Phytopathological Society.

Poster

An international wheat diversity panel reveals novel sources of genetic resistance to tan spot in Australia
Taylor, Julian, Jorgensen, Dorthe, Moff, Caroline S., Chalmers, Ken J., Fox, Rebecca, Hollaway, Grant J., Cook, Melissa J., Neate, Stephen M., See, Pao Theen and Shankar, Manisha. 2023. "An international wheat diversity panel reveals novel sources of genetic resistance to tan spot in Australia." Theoretical and Applied Genetics: international journal of plant breeding research. 136 (3). https://doi.org/10.1007/s00122-023-04332-y

Article

An introduction to key distributions and models in epidemiology using R
Garrett, Karen A., Esker, Paul D. and Sparks, Adam H.. 2015. "An introduction to key distributions and models in epidemiology using R." Stevenson, Katherine L. and Jeger, Michael J. (ed.) Exercises in plant disease epidemiology. St. Paul, Minnesota. American Phytopathological Society. pp. 3-14

Textbook (chapter)

An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley
Knight, N. L., Platz, G. J., Lehmensiek, A. and Sutherland, M. W.. 2010. "An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley." Australasian Plant Pathology. 39 (3), pp. 207-216. https://doi.org/10.1071/AP09082

Article

Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat
Müller, Marion C., Kunz, Lukas, Schudel, Seraina, Lawson, Aaron W., Kammerecker, Sandrine, Isaksson, Jonatan, Wyler, Michele, Graf, Johannes, Sotiropoulos, Alexandro G.s, Praz, Coraline R., Manser, Beatrice, Wicker, Thomas, Bourras, Salim and Keller, Beat. 2022. "Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat." Proceedings of the National Academy of Sciences (PNAS). 119 (30). https://doi.org/10.1073/pnas.2108808119

Article

Arbuscular mycorrhizal fungal diversity in perennial pastures; responses to long-term lime application
Guo, Y. J., Ni, Y., Raman, H., Wilson, B. A. L., Ash, G. J., Wang, A. S. and Li, G. D.. 2012. "Arbuscular mycorrhizal fungal diversity in perennial pastures; responses to long-term lime application." Plant and Soil: international journal on plant-soil relationships. 351 (1-2), pp. 389-403. https://doi.org/10.1007/s11104-011-0976-7

Article

Arbuscular mycorrhizal fungal diversity increases growth and phosphorus uptake in C3 and C4 crop plants
Frew, Adam. 2019. "Arbuscular mycorrhizal fungal diversity increases growth and phosphorus uptake in C3 and C4 crop plants." Soil Biology and Biochemistry. 135, pp. 248-250. https://doi.org/10.1016/j.soilbio.2019.05.015

Article

Arbuscular mycorrhizal fungi acted synergistically with Bradyrhizobium sp. to improve nodulation, nitrogen fixation, plant growth and seed yield of mung bean (Vigna radiata) but increased the population density of the root‑lesion nematode Pratylenchus thornei
Gough, Elaine C., Owen, Kirsty J., Zwart, Rebecca S. and Thompson, John P.. 2021. "Arbuscular mycorrhizal fungi acted synergistically with Bradyrhizobium sp. to improve nodulation, nitrogen fixation, plant growth and seed yield of mung bean (Vigna radiata) but increased the population density of the root‑lesion nematode Pratylenchus thornei." Plant and Soil: international journal on plant-soil relationships. 465 (1-2), pp. 431-452. https://doi.org/10.1007/s11104-021-05007-7

Article

Arbuscular mycorrhizal fungi improve the growth and nodulation of the annual legume messina (Melilotus siculus) under saline and non-saline conditions
Wilson, B. A. L., Ash, G. J. and Harper, J. D. I.. 2012. "Arbuscular mycorrhizal fungi improve the growth and nodulation of the annual legume messina (Melilotus siculus) under saline and non-saline conditions." Crop and Pasture Science. 63 (2), pp. 164-178. https://doi.org/10.1071/CP11193

Article

Arbuscular mycorrhizal fungi promote silicon accumulation in plant roots, reducing the impacts of root herbivory
Frew, Adam, Powell, Jeff R., Allsopp, Peter G., Sallam, Nader and Johnson, Scott N.. 2017. "Arbuscular mycorrhizal fungi promote silicon accumulation in plant roots, reducing the impacts of root herbivory." Plant and Soil: international journal on plant-soil relationships. 419 (1-2), pp. 423-433. https://doi.org/10.1007/s11104-017-3357-z

Article

Arsenic accumulation in rice (Oryza sativa L.) is influenced by environment and genetic factors
Kumarathilaka, Prasanna, Seneweera, Saman, Meharg, Andrew and Bundschuh, Jochen. 2018. "Arsenic accumulation in rice (Oryza sativa L.) is influenced by environment and genetic factors." Science of the Total Environment. 642, pp. 485-496. https://doi.org/10.1016/j.scitotenv.2018.06.030

Article

Arsenic in cooked rice foods: assessing health risks and mitigation options
Kumarathilaka, Prasanna, Seneweera, Saman, Ok, Yong Sik, Meharg, Andrew and Bundschuh, Jochen. 2019. "Arsenic in cooked rice foods: assessing health risks and mitigation options." Environment International. 127, pp. 584-591. https://doi.org/10.1016/j.envint.2019.04.004

Article

Arsenic speciation dynamics in paddy rice soil-water environment: sources, physico-chemical, and biological factors - a review
Kumarathilaka, Prasanna, Seneweera, Saman, Meharg, Andrew and Bundschuh, Jochen. 2018. "Arsenic speciation dynamics in paddy rice soil-water environment: sources, physico-chemical, and biological factors - a review." Water Research. 140, pp. 403-414. https://doi.org/10.1016/j.watres.2018.04.034

Article

ascotraceR: An R Package Resource to Simulate the Spatiotemporal Spread of Ascochyta Blight in a Chickpea Field Over a Growing Season
Khaliq, Ihsanul, Melloy Paul and Sparks, Adam H.. 2022. "ascotraceR: An R Package Resource to Simulate the Spatiotemporal Spread of Ascochyta Blight in a Chickpea Field Over a Growing Season ." Phytopathology: International Journal of the American Phytopathological Society. 112 (9), pp. 2032-2035. https://doi.org/10.1094/PHYTO-01-22-0016-A

Notes or commentaries

Asexual and sexual morphs of Moesziomyces revisited
Kruse, Julia, Doehlemann, Gunther, Kemen, Eric and Thines, Marco. 2017. "Asexual and sexual morphs of Moesziomyces revisited." IMA Fungus: the global mycological journal. 8 (1), pp. 117-129. https://doi.org/10.5598/imafungus.2017.08.01.09

Article

Assessment of grain quality in terms of functional group response to elevated [CO2], water, and nitrogen using a meta‐analysis: grain protein, zinc, and iron under future climate
Al‐Hadeethi, Ikhlas, Li, Yan, Odhafa, Abdul Kareem H., Seneweera, Saman and Lam, Shu K.. 2019. "Assessment of grain quality in terms of functional group response to elevated [CO2], water, and nitrogen using a meta‐analysis: grain protein, zinc, and iron under future climate." Ecology and Evolution. 9 (13), pp. 7425-7437. https://doi.org/10.1002/ece3.5210

Article

Assessment of infection by Fusarium Pseudograminearum in wheat seedling tissues using quantitative PCR and a visual discoloration scale
Knight, Noel L., Sutherland, Mark W., Martin, Anke and Herde, Damian J.. 2012. "Assessment of infection by Fusarium Pseudograminearum in wheat seedling tissues using quantitative PCR and a visual discoloration scale." Plant Disease: an international journal of applied plant pathology. 96 (11), pp. 1661-1669. https://doi.org/10.1094/PDIS-12-11-1050-RE

Article

Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W. and Martin, Anke. 2018. "Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses." Molecular Breeding: new strategies in plant improvement. 38 (7), pp. 1-8. https://doi.org/10.1007/s11032-018-0838-6

Article

Australia offers unique insight into the ecology of arbuscular mycorrhizal fungi: An opportunity not to be lost
Frew, Adam and Aguilar-Trigueros, Carlos A.. 2023. "Australia offers unique insight into the ecology of arbuscular mycorrhizal fungi: An opportunity not to be lost." Austral Ecology: a journal of ecology in the Southern Hemisphere. 48 (8), pp. 1713-1720. https://doi.org/10.1111/aec.13451

Article

Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales
Kiss, Levente, Vaghefi, Niloofar, Bransgrove, Kaylene, Dearnaley, John D. W., Takamatsu, Susumu, Tan, Yu Pei, Marston, Craig, Liu, Shu-Yan, Jin, Dan-Ni, Adorada, Dante L., Bailey, Jordan, Cabrera de Alvarez, Maria Graciela, Daly, Andrew, Dirchwolf, Pamela Maia, Jones, Lynne, Nguyen, Thuan Dat, Edwards, Jacqueline, Ho, Wellcome, Kelly, Lisa, ..., Braun, Uwe. 2020. "Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales." Frontiers in Microbiology. 11, pp. 1-31. https://doi.org/10.3389/fmicb.2020.01571

Article

Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited
Tan, Yu Pei, Shivas, Roger G., Marney, Thomas S., Edwards, Jacqueline, Dearnaley, John, Jami, Fahimeh and Burgess, Treena I.. 2019. "Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited." Australasian Plant Pathology. 48 (1), pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7

Article

Austropleospora osteospermi gen. et sp. nov. and its host specificity and distribution on Chrysanthemoides monilifera ssp. rotundata in Australia
Morin, Louise, Shivas, R. G., Piper, M. C. and Tan, Y. P.. 2010. "Austropleospora osteospermi gen. et sp. nov. and its host specificity and distribution on Chrysanthemoides monilifera ssp. rotundata in Australia ." Fungal Diversity. 40 (1), pp. 65-74. https://doi.org/10.1007/s13225-009-0007-7

Article

Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews
Thines, Marco, Telle, Sabine, Choi, Young Joon, Tan, Yu Pei and Shivas, Roger G.. 2015. "Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews." IMA Fungus: the global mycological journal. 6 (2), pp. 483-491. https://doi.org/10.5598/imafungus.2015.06.02.12

Article

Belowground crop responses to root herbivory are associated with the community structure of native arbuscular mycorrhizal fungi
Ng, Anna, Wilson, Bree A.L. and Frew, Adam. 2023. "Belowground crop responses to root herbivory are associated with the community structure of native arbuscular mycorrhizal fungi." Applied Soil Ecology. 185. https://doi.org/10.1016/j.apsoil.2022.104797

Article

Belowground ecology of scarabs feeding on grass roots: current knowledge and future directions for management in Australasia
Frew, Adam, Barnett, Kirk, Nielsen, Uffe N., Riegler, Markus and Johnson, Scott N.. 2016. "Belowground ecology of scarabs feeding on grass roots: current knowledge and future directions for management in Australasia." Frontiers in Plant Science. 7 (321), pp. 1-15. https://doi.org/10.3389/fpls.2016.00321

Article

Benefits from below: silicon supplementation maintains legume productivity under predicted climate change scenarios
Johnson, Scott N., Ryalls, James M. W., Gherlenda, Andrew N., Frew, Adam and Hartley, Susan E.. 2018. "Benefits from below: silicon supplementation maintains legume productivity under predicted climate change scenarios." Frontiers in Plant Science. 9, pp. 1-9. https://doi.org/10.3389/fpls.2018.00202

Article

Biodiscovery and the Queensland Plant Pathology Herbarium
Shivas, Roger G., Beasley, Dean R., Bransgrove, Kaylene, Tan, Yu Pei and Bulow, Geoff. 2019. "Biodiscovery and the Queensland Plant Pathology Herbarium." Microbiology Australia. 40 (3), pp. 134-137. https://doi.org/10.1071/MA19036

Article

Bioenergy from cotton industry wastes: a review and potential
Hamawand, Ihsan, Sandell, Gary, Pittaway, Pam, Chakrabarty, Sayan, Yusaf, Talal, Chen, Guangnan, Seneweera, Saman, Al-Lwayzy, Saddam, Bennett, John and Hopf, Joshua. 2016. "Bioenergy from cotton industry wastes: a review and potential." Renewable and Sustainable Energy Reviews. 66, pp. 435-448. https://doi.org/10.1016/j.rser.2016.08.033

Article

Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley
Sutherland, M. W., Lehmensiek, A., Leist, C., Platz, G. and Usher, T. R.. 2009. "Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Indooroopilly, Australia.

Paper

bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]
Sparks, Adam H., Padgham, Mark, Parsonage, Hugh and Pembleton, Keith. 2017. bomrang: fetch Australian Government Bureau of Meteorology data in R [Journal of Open Source Software, vol. 2, no. 17, 411]. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.00411

Software

Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus
Kruse, J., McTaggart, A. R., Dhileepan, K., Musili, P. M., Mutie, F. M., Ntandu, J. E., Edogbanya, P. R. O., Chukwuma, E. C. and Shivas, R. G.. 2021. "Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus." Mycological Progress: international journal of fungal sciences. 20, pp. 191-201. https://doi.org/10.1007/s11557-020-01664-7

Article

Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus
Kruse, J., Piatek, M., Lutz, M. and Thines, M.. 2018. "Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus." Persoonia. 41, pp. 175-201. https://doi.org/10.3767/persoonia.2018.41.09

Article

Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?
Tausz-Posch, Sabine, Seneweera, Saman, Norton, Robert M., Fitzgerald, Glenn J. and Tausz, Michael. 2012. "Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO2?" Field Crops Research. 133, pp. 160-166. https://doi.org/10.1016/j.fcr.2012.04.007

Article

Can additional N fertiliser ameliorate the elevated CO2-induced depression in grain and tissue N concentrations of wheat on a high soil N background?
Tausz, M., Norton, R. M., Tausz-Posch, S., Low, M., Seneweera, S., O'Leary, G., Armstrong, R. and Fitzgerald, G. J.. 2017. "Can additional N fertiliser ameliorate the elevated CO2-induced depression in grain and tissue N concentrations of wheat on a high soil N background?" Journal of Agronomy and Crop Science. 203 (6), pp. 574-583. https://doi.org/10.1111/jac.12209

Article

Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?
Del Ponte, Emerson M., Sparks, Adam H., Cunniffe, Nik J. and Madden, Laurence V.. 2018. "Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?" 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.

Keynote

Carbon dioxide (CO2) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries
Zhu, Chunwu, Kobayashi, Kazuhiko, Loladze, Irakli, Zhu, Jianguo, Jiang, Qian, Xu, Xi, Liu, Gang, Seneweera, Saman, Ebi, Kristie L., Drewnowski, Adam, Fukagawa, Naomi K. and Ziska, Lewis H.. 2018. "Carbon dioxide (CO2) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries." Science Advances. 4 (5), pp. 1-8. https://doi.org/10.1126/sciadv.aaq1012

Article

Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers
O'Malley, Thomas B., Hay, Frank S., Scott, Jason B., Gent, David H., Shivas, Roger G. and Pethybridge, Sarah J.. 2015. "Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers." Canadian Journal of Plant Pathology. 37 (2), pp. 179-187. https://doi.org/10.1080/07060661.2015.1036122

Article