Mapping quantitative trait loci for resistance to Pratylenchus thornei from synthetic hexaploid wheat in the International Triticeae Mapping Initiative (ITMI) population

Article

Zwart, R. S., Thompson, J. P., Sheedy, J. G. and Nelson, J.. 2006. "Mapping quantitative trait loci for resistance to Pratylenchus thornei from synthetic hexaploid wheat in the International Triticeae Mapping Initiative (ITMI) population." Australian Journal of Agricultural Research. 57 (5), pp. 525-530. https://doi.org/10.1071/AR05177
Article Title

Mapping quantitative trait loci for resistance to Pratylenchus thornei from synthetic hexaploid wheat in the International Triticeae Mapping Initiative (ITMI) population

ERA Journal ID5177
Article CategoryArticle
AuthorsZwart, R. S., Thompson, J. P., Sheedy, J. G. and Nelson, J.
Journal TitleAustralian Journal of Agricultural Research
Journal Citation57 (5), pp. 525-530
Number of Pages6
Year2006
PublisherCSIRO Publishing
Place of PublicationAustralia
ISSN0004-9409
1444-9838
Digital Object Identifier (DOI)https://doi.org/10.1071/AR05177
Web Address (URL)https://www.publish.csiro.au/cp/ar05177
Abstract

Root-lesion nematode (Pratylenchus thornei) is a serious pathogen of wheat in many countries. The International Triticeae Mapping Initiative (ITMI) population of recombinant inbred lines (RILs) was assessed for resistance to P. thornei to determine the chromosome locations of the resistance genes. The ITMI population is derived from a cross between the resistant synthetic hexaploid wheat W-7984 and a susceptible bread wheat cultivar Opata 85. Two years of phenotypic data for resistance to P. thornei were obtained in replicated glasshouse trials. Quantitative trait locus (QTL) analysis was performed using available segregation and map data for 114 RILs. A QTL on chromosome 6DS showed consistent effects for reduced nematode numbers (partial resistance) across years and accounted for 11% and 23% of the phenotypic variation. A second QTL for P. thornei resistance on chromosome 2BS accounted for an additional 19% and 5%. Restriction fragment length polymorphism (RFLP) and simple sequence repeat (SSR) markers associated with the QTLs are physically located in regions rich in major genes at the distal ends of the short chromosome arms of 6D and 2B. SSR markers with potential for marker-assisted selection of P. thornei resistance effective in different genetic backgrounds have been identified.

Keywordsroot-lesion nematodes; bread wheat; molecular markers; MAS; composite interval mapping
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020300409. Crop and pasture protection (incl. pests, diseases and weeds)
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Byline AffiliationsDepartment of Primary Industries and Fisheries, Queensland
Centre for Crop Health (Operations)
Kansas State University, United States
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Thompson, J. P., Clewett, T. G. and O'Reilly, M. M.. 2015. "Optimising initial population density, growth time and nitrogen nutrition for assessing resistance of wheat cutivars to root-lesion nematode (Pratylenchus thornei)." Australasian Plant Pathology. 44 (2), pp. 133-147. https://doi.org/10.1007/s13313-015-0347-6
Wheat biomass and yield increased when populations of the root-lesion nematode (Pratylenchus thornei) were reduced through sequential rotation of partially resistant winter and summer crops
Owen, K. J., Clewett, T. G., Bell, K. L. and Thompson, J. P.. 2014. "Wheat biomass and yield increased when populations of the root-lesion nematode (Pratylenchus thornei) were reduced through sequential rotation of partially resistant winter and summer crops." Crop and Pasture Science. 65 (3), pp. 227-241. https://doi.org/10.1071/CP13295
Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures
Sheedy, J. G., McKay, A. C., Lewis, J., Vanstone, V. A., Fletcher, S., Kelly, A. and Thompson, J. P.. 2015. "Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures." Australasian Plant Pathology. 44 (2), pp. 175-182. https://doi.org/10.1007/s13313-014-0333-4
Root-lesion nematodes - crop rotations and varietal impacts on nematode populations
Owen, Kirsty, Clewett, Tim, Reen, Ros, Sheedy, Jason and Thompson, John. 2011. "Root-lesion nematodes - crop rotations and varietal impacts on nematode populations." 2011 GRDC Advisor Update, Goondiwindi. Goondiwindi, Australia 02 - 03 Mar 2011 Canberra, Australia.
Pre-breeding wheat for resistance to root-lesion nematodes
Thompson, John, Sheedy, Jason, Robinson, Neil, Reen, Ros, Clewett, Tim and Lin, Jing. 2012. "Pre-breeding wheat for resistance to root-lesion nematodes." 2012 GRDC Grains Research Update, Goondiwindi. Goondiwindi, Australia 12 Apr 2012 Canberra, Australia.
Summer crop decisions and root lesion nematodes
Owen, Kirsty, Clewett, Tim and Thompson, John. 2013. "Summer crop decisions and root lesion nematodes." 2013 GRDC Grains Research Update, Bellata and Inglestone. Bellata and Inglestone, Australia 16 Jul 2013 Canberra, Australia.
Latest nematode summer and winter crop rotation results
Owen, Kirsty, Clewett, Tim and Thompson, John. 2014. "Latest nematode summer and winter crop rotation results." 2014 GRDC Grains Research Update, Goondiwindi. Goondiwindi, Australia 04 Mar 2014 Canberra, Australia.
How nematodes reduce yield
Whish, J. P. M., Thompson, J. P., Clewett, T. G., Lawrence, J. L. and Wood, J.. 2014. "How nematodes reduce yield." 2014 GRDC Grains Research Update, Goondiwindi. Goondiwindi, Australia 04 Mar 2014 Canberra, Australia.
Resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus) in synthetic hexaploid wheats and their durum and Aegilops tauschii parents
Thompson, J. P.. 2008. "Resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus) in synthetic hexaploid wheats and their durum and Aegilops tauschii parents." Australian Journal of Agricultural Research. 59 (5), pp. 432-446. https://doi.org/10.1071/AR07222
Field inoculation with arbuscular-mycorrhizal fungi overcomes phosphorus and zinc deficiencies of linseed (Linum usitatissimum) in a vertisol subject to long-fallow disorder
Thompson, J. P., Clewett, T. G. and Fiske, M. L.. 2013. "Field inoculation with arbuscular-mycorrhizal fungi overcomes phosphorus and zinc deficiencies of linseed (Linum usitatissimum) in a vertisol subject to long-fallow disorder." Plant and Soil: international journal on plant-soil relationships. 371 (1-2), pp. 117-137. https://doi.org/10.1007/s11104-013-1679-z
QTL mapping of multiple foliar disease and root-lesion nematode resistances in wheat
Zwart, R. S., Thompson, J. P., Milgate, A. W., Bansal, U. K., Williamson, P. M., Raman, H. and Bariana, H. S.. 2010. "QTL mapping of multiple foliar disease and root-lesion nematode resistances in wheat." Molecular Breeding: new strategies in plant improvement. 26 (1), pp. 107-124. https://doi.org/10.1007/s11032-009-9381-9
Inheritance of resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus) in five doubled-haploid populations of wheat
Thompson, John P., Zwart, Rebecca S. and Butler, David. 2012. "Inheritance of resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus) in five doubled-haploid populations of wheat." Euphytica: international journal on plant breeding. 188 (2), pp. 209-219. https://doi.org/10.1007/s10681-012-0689-x
Crop rotation for the management of root-lesion nematodes in the northern grain region of Australia
Owen, K., Clewett, T. and Thompson, J.. 2008. "Crop rotation for the management of root-lesion nematodes in the northern grain region of Australia." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.
Survey for root-lesion and stunt nematodes in the northern Australian grain region
Thompson, J. P., Clewett, T. G., Reen, R. A., Sheedy, J. G. and O'Reilly, M. M.. 2008. "Survey for root-lesion and stunt nematodes in the northern Australian grain region." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.
Crop rotation to replace nematicide treatments for assessing chickpea varietal tolerance to Pratylenchus thornei
Reen, R. A., Clewett, T. G. and Thompson, J. P.. 2008. "Crop rotation to replace nematicide treatments for assessing chickpea varietal tolerance to Pratylenchus thornei." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.
Distribution, virulence and genetic management of root lesion nematodes in the Pacific Northwest USA
Sheedy, J. G., Smiley, R. W., Thompson, A. L., Easley, S. A. and Yan, G.. 2008. "Distribution, virulence and genetic management of root lesion nematodes in the Pacific Northwest USA." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.
Evaluating wheat for tolerance and resistance to root-lesion nematodes
Thompson, J. P., Clewett, T. G., Sheedy, J. G. and Seymour, N. P.. 2008. "Evaluating wheat for tolerance and resistance to root-lesion nematodes." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.
Resistance to the root-lesion nematode Pratylenchus thornei in wheat landraces and cultivars from the West Asia and North Africa (WANA) region
Thompson, J. P., O'Reilly, M. M. and Clewett, T. G.. 2009. "Resistance to the root-lesion nematode Pratylenchus thornei in wheat landraces and cultivars from the West Asia and North Africa (WANA) region." Crop and Pasture Science. 60 (12), pp. 1209-1217. https://doi.org/10.1071/CP09159
Root-lesion nematodes (Pratylenchus thornei and P. neglectus): a review of recent progress in managing a significant pest of grain crops in northern Australia
Thompson, J. P., Owen, K. J., Stirling, G. R. and Bell, M. J.. 2008. "Root-lesion nematodes (Pratylenchus thornei and P. neglectus): a review of recent progress in managing a significant pest of grain crops in northern Australia." Australasian Plant Pathology. 37 (3), pp. 235-242. https://doi.org/10.1071/AP08021
Inheritance of resistance to root-lesion nematode (Pratylenchus thornei) in wheat landraces and cultivars from the West Asia and North Africa (WANA) region
Thompson, J. P. and Seymour, N. P.. 2011. "Inheritance of resistance to root-lesion nematode (Pratylenchus thornei) in wheat landraces and cultivars from the West Asia and North Africa (WANA) region." Crop and Pasture Science. 62 (1), pp. 82-93. https://doi.org/10.1071/CP10309
Stunted cotton (Gossypium hirsutum L.) fully recovers biomass and yield of seed cotton after delayed root inoculation with spores of an arbuscular mycorrhizal fungus (Glomus mosseae)
Thompson, J. P., Seymour, N. P. and Clewett, T. G.. 2012. "Stunted cotton (Gossypium hirsutum L.) fully recovers biomass and yield of seed cotton after delayed root inoculation with spores of an arbuscular mycorrhizal fungus (Glomus mosseae)." Australasian Plant Pathology. 41 (4), pp. 431-437. https://doi.org/10.1007/s13313-012-0137-3
Root-lesion nematode (Pratylenchus thornei) reduces nutrient response, biomass and yield of wheat in sorghum-fallow-wheat cropping systems in a subtropical environment
Thompson, J. P., Mackenzie, J. and Sheedy, G. H.. 2012. "Root-lesion nematode (Pratylenchus thornei) reduces nutrient response, biomass and yield of wheat in sorghum-fallow-wheat cropping systems in a subtropical environment." Field Crops Research. 137, pp. 126-140. https://doi.org/10.1016/j.fcr.2012.08.011
Pratylenchus thornei populations reduce water uptake in intolerant wheat cultivars
Whish, J. P. M., Thompson, J. P., Clewett, T. G., Lawrence, J. L. and Wood, J.. 2014. "Pratylenchus thornei populations reduce water uptake in intolerant wheat cultivars." Field Crops Research. 161, pp. 1-10. https://doi.org/10.1016/j.fcr.2014.02.002
Pre-cropping with canola decreased Pratylenchus thornei populations, arbuscular mycorrhizal fungi, and yield of wheat
Owen, K. J., Clewett, T. G. and Thompson, J. P.. 2010. "Pre-cropping with canola decreased Pratylenchus thornei populations, arbuscular mycorrhizal fungi, and yield of wheat." Crop and Pasture Science. 61 (5), pp. 399-410. https://doi.org/10.1071/CP09345
Detection of Polymyxa graminis in a barley crop in Australia
Thompson, J. P., Clewett, T. G., Jennings, R. E., Sheedy, J. G., Owen, K. J. and Persley, D. M.. 2011. "Detection of Polymyxa graminis in a barley crop in Australia." Australasian Plant Pathology. 40 (1), pp. 66-75. https://doi.org/10.1007/s13313-010-0015-9
Detection and discrimination of Pratylenchus neglectus and P. thornei in DNA extracts from soil
Yan, Guiping, Smiley, Richard W., Okubara, Patricia A., Skantar, Andrea, Easley, Sandra A., Sheedy, Jason G. and Thompson, Alison L.. 2008. "Detection and discrimination of Pratylenchus neglectus and P. thornei in DNA extracts from soil." Plant Disease: an international journal of applied plant pathology. 92 (11), pp. 1480-1487. https://doi.org/10.1094/PDIS-92-11-1480
Hybridisation of Australian chickpea cultivars with wild Cicer spp. increases resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus)
Thompson, John P., Reen, Roslyn A., Clewett, Timothy G., Sheedy, Jason G., Kelly, Alison M., Gogel, Beverley J. and Knights, Edward J.. 2011. "Hybridisation of Australian chickpea cultivars with wild Cicer spp. increases resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus)." Australasian Plant Pathology. 40 (6), pp. 601-611. https://doi.org/10.1007/s13313-011-0089-z
First record of stubby-root nematode (Paratrichodorus porosus) associated with barley in Australia
Sheedy, J. G., Clewett, T. G., Hodda, M. and Thompson, J. P.. 2010. "First record of stubby-root nematode (Paratrichodorus porosus) associated with barley in Australia." Australasian Plant Disease Notes. 5 (1), pp. 66-69. https://doi.org/10.1071/DN10024
Vertical distribution of Pratylenchus spp. in silt loam soil and Pacific Northwest dryland crops
Smiley, Richard W., Sheedy, Jason G. and Easley, Sandra A.. 2008. "Vertical distribution of Pratylenchus spp. in silt loam soil and Pacific Northwest dryland crops." Plant Disease: an international journal of applied plant pathology. 92 (12), pp. 1662-1668. https://doi.org/10.1094/PDIS-92-12-1662
Occurrence of root-lesion nematodes (Pratylenchus thornei and P. neglectus) and stunt nematode (Merlinius brevidens) in the northern grain region of Australia
Thompson, J. P., Clewett, T. G., Sheedy, J. G., Reen, R. A., O'Reilly, M. M. and Bell, K. L.. 2010. "Occurrence of root-lesion nematodes (Pratylenchus thornei and P. neglectus) and stunt nematode (Merlinius brevidens) in the northern grain region of Australia." Australasian Plant Pathology. 39 (3), pp. 254-264. https://doi.org/10.1071/AP09094
Resistance to the root-lesion nematode Pratylenchus thornei of Iranian landrace wheat
Sheedy, J. G. and Thompson, J. P.. 2009. "Resistance to the root-lesion nematode Pratylenchus thornei of Iranian landrace wheat." Australasian Plant Pathology. 38 (5), pp. 478-489. https://doi.org/10.1071/AP09030
Diploid and tetraploid progenitors of wheat are valuable sources of resistance to the root lesion nematode Pratylenchus thornei
Sheedy, J. G., Thompson, J. P. and Kelly, A.. 2012. "Diploid and tetraploid progenitors of wheat are valuable sources of resistance to the root lesion nematode Pratylenchus thornei." Euphytica: international journal on plant breeding. 186 (2), pp. 377-391. https://doi.org/10.1007/s10681-011-0617-5
Evaluation of genetic diversity of Fusarium head blight resistance in European winter wheat
Zwart, Rebecca S., Muylle, Hilde, Van Bockstaele, Erik and Roldán-Ruiz, Isabel. 2008. "Evaluation of genetic diversity of Fusarium head blight resistance in European winter wheat." Theoretical and Applied Genetics: international journal of plant breeding research. 117 (5), pp. 813-828. https://doi.org/10.1007/s00122-008-0822-3
Combining ability analysis of Fusarium head blight resistance in western European wheat lines
Zwart, Rebecca S., Muylle, Hilde, Van Huylenbroeck, Johan, Van Bockstaele, Erik and Roldán-Ruiz, Isabel. 2008. "Combining ability analysis of Fusarium head blight resistance in western European wheat lines." Euphytica: international journal on plant breeding. 162 (3), pp. 449-456. https://doi.org/10.1007/s10681-007-9611-3
Identification of quantitative trait loci for resistance to two species of root-lesion nematode (Pratylenchus thornei and P. neglectus) in wheat
Zwart, R. S., Thompson, J. P. and Godwin, I. D.. 2005. "Identification of quantitative trait loci for resistance to two species of root-lesion nematode (Pratylenchus thornei and P. neglectus) in wheat ." Australian Journal of Agricultural Research. 56 (4), pp. 345-352. https://doi.org/10.1071/AR04223
Genetic analysis of resistance to root-lesion nematode (Pratylenchusthornei) in wheat
Zwart, R. S., Thompson, J. P. and Godwin, I. D.. 2004. "Genetic analysis of resistance to root-lesion nematode (Pratylenchusthornei) in wheat." Plant Breeding. 123 (3), pp. 209-212. https://doi.org/10.1111/j.1439-0523.2004.00986.x
Inheritance and mapping of 11 avirulence genes in Phytophthora sojae
May, K.J., Whisson, S.C., Zwart R.S., Searle, I.R., Irwin, J.A.G., Maclean, D.J., Carroll, B.J. and Drenth, A.. 2002. "Inheritance and mapping of 11 avirulence genes in Phytophthora sojae ." Fungal Genetics and Biology. 37 (1), pp. 1-12. https://doi.org/10.1016/S1087-1845(02)00027-0
Phytotoxicity of fosetyl Al and phosphonic acid to maize during production of vesicular-arbuscular mycorrhizal inoculum
Seymour, N. P., Thompson, J. P. and Fiske M. L.. 1994. "Phytotoxicity of fosetyl Al and phosphonic acid to maize during production of vesicular-arbuscular mycorrhizal inoculum ." Plant Disease: an international journal of applied plant pathology. 78 (5), pp. 441-446. https://doi.org/10.1094/PD-78-0441