Two decades of association mapping: Insights on disease resistance in major crops

Article

Gangurde, Sunil S., Xavier, Alencar, Naik, Yogesh Dashrath, Jha, Uday Chand, Rangari, Sagar Krushnaji, Kumar, Raj, Reddy, M. S. Sai, Channale, Sonal, Elango, Dinakaran, Mir, Reyazul Rouf, Zwart, Rebecca, Laxuman, C., Sudini, Hari Kishan, Pandey, Manish K., Punnuri, Somashekhar, Mendu, Venugopal, Reddy, Umesh K., Guo, Baozhu, Gangarao, N. V. P. R., ..., Thudi, Mahendar. 2022. "Two decades of association mapping: Insights on disease resistance in major crops." Frontiers in Plant Science. 13. https://doi.org/10.3389/fpls.2022.1064059
Article Title

Two decades of association mapping: Insights on disease resistance in major crops

ERA Journal ID200524
Article CategoryArticle
AuthorsGangurde, Sunil S., Xavier, Alencar, Naik, Yogesh Dashrath, Jha, Uday Chand, Rangari, Sagar Krushnaji, Kumar, Raj, Reddy, M. S. Sai, Channale, Sonal, Elango, Dinakaran, Mir, Reyazul Rouf, Zwart, Rebecca, Laxuman, C., Sudini, Hari Kishan, Pandey, Manish K., Punnuri, Somashekhar, Mendu, Venugopal, Reddy, Umesh K., Guo, Baozhu, Gangarao, N. V. P. R., Sharma, Vinay K., Wang, Xingjun, Zhao, Chuanzhi and Thudi, Mahendar
Journal TitleFrontiers in Plant Science
Journal Citation13
Article Number1064059
Number of Pages22
Year2022
PublisherFrontiers Media SA
Place of PublicationSwitzerland
ISSN1664-462X
Digital Object Identifier (DOI)https://doi.org/10.3389/fpls.2022.1064059
Web Address (URL)https://www.frontiersin.org/articles/10.3389/fpls.2022.1064059/full
Abstract

Climate change across the globe has an impact on the occurrence, prevalence, and severity of plant diseases. About 30% of yield losses in major crops are due to plant diseases; emerging diseases are likely to worsen the sustainable production in the coming years. Plant diseases have led to increased hunger and mass migration of human populations in the past, thus a serious threat to global food security. Equipping the modern varieties/hybrids with enhanced genetic resistance is the most economic, sustainable and environmentally friendly solution. Plant geneticists have done tremendous work in identifying stable resistance in primary genepools and many times other than primary genepools to breed resistant varieties in different major crops. Over the last two decades, the availability of crop and pathogen genomes due to advances in next generation sequencing technologies improved our understanding of trait genetics using different approaches. Genome-wide association studies have been effectively used to identify candidate genes and map loci associated with different diseases in crop plants. In this review, we highlight successful examples for the discovery of resistance genes to many important diseases. In addition, major developments in association studies, statistical models and bioinformatic tools that improve the power, resolution and the efficiency of identifying marker-trait associations. Overall this review provides comprehensive insights into the two decades of advances in GWAS studies and discusses the challenges and opportunities this research area provides for breeding resistant varieties.

Keywordsplant diseases; haplotypes; pangenomes; multiparent populations; k-mers; genome wide association studies
ANZSRC Field of Research 2020300409. Crop and pasture protection (incl. pests, diseases and weeds)
Byline AffiliationsAgriculture Research Service, United States
University of Georgia, United States
Purdue University, United States
Dr. Rajendra Prasad Central Agricultural University, India
Indian Institute of Pulses Research, India
Centre for Crop Health
Iowa State University, United States
Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST), India
University of Agricultural Sciences Raichur, India
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), India
Dr. Fort Valley State University, United States
University of Montana, United States
West Virginia University, United States
International Maize and Wheat Improvement Center, Kenya
Shandong Academy of Agricultural Sciences, China
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