Legume Pangenome: Status and Scope for Crop Improvement

Article

Jha, Uday Chand, Nayyar, Harsh, von Wettberg, Eric J. B., Naik, Yogesh Dashrath, Thudi, Mahendar and Siddique, Kadambot H. M.. 2022. "Legume Pangenome: Status and Scope for Crop Improvement." Plants. 11 (22). https://doi.org/10.3390/plants11223041
Article Title

Legume Pangenome: Status and Scope for Crop Improvement

ERA Journal ID213962
Article CategoryArticle
AuthorsJha, Uday Chand, Nayyar, Harsh, von Wettberg, Eric J. B., Naik, Yogesh Dashrath, Thudi, Mahendar and Siddique, Kadambot H. M.
Journal TitlePlants
Journal Citation11 (22)
Article Number3041
Number of Pages14
Year2022
PublisherMDPI AG
Place of PublicationSwitzerland
ISSN2223-7747
Digital Object Identifier (DOI)https://doi.org/10.3390/plants11223041
Web Address (URL)https://www.mdpi.com/2223-7747/11/22/3041
Abstract

In the last decade, legume genomics research has seen a paradigm shift due to advances in genome sequencing technologies, assembly algorithms, and computational genomics that enabled the construction of high-quality reference genome assemblies of major legume crops. These advances have certainly facilitated the identification of novel genetic variants underlying the traits of agronomic importance in many legume crops. Furthermore, these robust sequencing technologies have allowed us to study structural variations across the whole genome in multiple individuals and at the species level using ‘pangenome analysis.’ This review updates the progress of constructing pangenome assemblies for various legume crops and discusses the prospects for these pangenomes and how to harness the information to improve various traits of economic importance through molecular breeding to increase genetic gain in legumes and tackle the increasing global food crisis.

Keywordspangenome; structural variation; genome sequence; gene; crop domestication; legumes
Byline AffiliationsIndian Institute of Pulses Research, India
Panjab University, India
University of Vermont, United States
Dr. Rajendra Prasad Central Agricultural University, India
Shandong Academy of Agricultural Sciences, China
University of Southern Queensland
University of Western Australia
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