High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Cicer arietinum L.)

Article

Kumar, Raj, Sharma, Vinay Kumar, Rangari, Sagar Krushnaji, Jha, Uday Chand, Sahu, Aakash, Paul, Pronob J., Gupta, Shreshth, Gangurde, Sunil S., Kudapa, Himabindu, Mir, Reyazul Rouf, Gaur, Pooran M., Varshney, Rajeev K., Varshney, Rajeev K. and Thudi, Mahendar. 2023. "High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Cicer arietinum L.)." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1274759
Article Title

High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Cicer arietinum L.)

ERA Journal ID200524
Article CategoryArticle
AuthorsKumar, Raj, Sharma, Vinay Kumar, Rangari, Sagar Krushnaji, Jha, Uday Chand, Sahu, Aakash, Paul, Pronob J., Gupta, Shreshth, Gangurde, Sunil S., Kudapa, Himabindu, Mir, Reyazul Rouf, Gaur, Pooran M., Varshney, Rajeev K., Varshney, Rajeev K. and Thudi, Mahendar
Journal TitleFrontiers in Plant Science
Journal Citation14
Article Number1274759
Number of Pages9
Year2023
PublisherFrontiers Media SA
Place of PublicationSwitzerland
ISSN1664-462X
Digital Object Identifier (DOI)https://doi.org/10.3389/fpls.2023.1274759
Web Address (URL)https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2023.1274759/full
Abstract

The rising global temperatures seriously threaten sustainable crop production, particularly the productivity and production of heat-sensitive crops like chickpeas. Multiple QTLs have been identified to enhance the heat stress tolerance in chickpeas, but their successful use in breeding programs remains limited. Towards this direction, we constructed a high-density genetic map spanning 2233.5 cM with 1069 markers. Using 138 QTLs reported earlier, we identified six Meta-QTL regions for heat tolerance whose confidence interval was reduced by 2.7-folds compared to the reported QTLs. Meta-QTLs identified on CaLG01 and CaLG06 harbor QTLs for important traits, including days to 50% flowering, days to maturity, days to flower initiation, days to pod initiation, number of filled pods, visual score, seed yield per plant, biological yield per plant, chlorophyll content, and harvest index. In addition, key genes identified in Meta-QTL regions like Pollen receptor-like kinase 3 (CaPRK3), Flowering-promoting factor 1 (CaFPF1), Flowering Locus C (CaFLC), Heat stress transcription factor A-5 (CaHsfsA5), and Pollen-specific leucine-rich repeat extensins (CaLRXs) play an important role in regulating the flowering time, pollen germination, and growth. The consensus genomic regions, and the key genes reported in this study can be used in genomics-assisted breeding for enhancing heat tolerance and developing heat-resilient chickpea cultivars.

Keywordscandidate genes; confidence interval; heat stress; Meta-QTLs; recombinant inbred lines
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020300404. Crop and pasture biochemistry and physiology
Byline AffiliationsDr. Rajendra Prasad Central Agricultural University, India
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), India
Indian Institute of Pulses Research, India
International Rice Research Institute, India
University of Georgia, United States
Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST), India
Iowa State University, United States
Centre for Crop Health
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