Open Data, Materials and Code Introduction
Presentation
Gacenga, Francis, Sparks, Adam and Del Ponte, Emerson M.. 2019. "Open Data, Materials and Code Introduction." Panczack, R., Gacenga, F., Sparks, A., King, R., Baker, P., Li, L., Schnyder, N., Lim, C. and Vickers-Jones, R. (ed.) Re:Produce Workshop - A Theo Murphy Initiative. Brisbane, Australia 10 - 11 Dec 2019 Australia. https://doi.org/10.17605/OSF.IO/XQ7C5
| Paper/Presentation Title | Open Data, Materials and Code Introduction |
|---|---|
| Presentation Type | Presentation |
| Authors | Gacenga, Francis, Sparks, Adam and Del Ponte, Emerson M. |
| Editors | Panczack, R., Gacenga, F., Sparks, A., King, R., Baker, P., Li, L., Schnyder, N., Lim, C. and Vickers-Jones, R. |
| Year | 2019 |
| Place of Publication | Australia |
| Digital Object Identifier (DOI) | https://doi.org/10.17605/OSF.IO/XQ7C5 |
| Web Address (URL) of Paper | https://re-produce-opendatamaterialscode.netlify.app/talk/presentation_1/ |
| Web Address (URL) of Conference Proceedings | https://aas.eventsair.com/reproduce-workshop/ |
| Conference/Event | Re:Produce Workshop - A Theo Murphy Initiative |
| Event Details | Re:Produce Workshop - A Theo Murphy Initiative Delivery In person Event Date 10 to end of 11 Dec 2019 Event Location Brisbane, Australia Event Venue River Room, Customs House, 399 Queen Street, Brisbane, QLD Event Description The Re:produce workshop aims to address the challenges of making reproducible science by offering researchers tools to help them make their research more open, transparent and verifiable. Early- and mid-career researchers and PhD students are invited to join the workshop to engage in two days of talks and hands-on training designed to identify effective tools and methods to address the reproducibility of their research. . As a delegate at the Re:produce workshop, you will have the chance to refresh the concepts and tools of reproducible science, engage in meaningful discussions, apply practical solutions to enhance the quality and credibility of your research, and establish valuable connections with researchers from different disciplines. Event Web Address (URL) |
| Abstract | This workshop introduces how you can make your research data, materials and code open and available. We intend to introduce the concept of a research compendium as a means to ensure that these these goals are met and why you would want to share your materials openly. To help familiriase participants, information on FAIR compendia (Findable, Accessible, Interoperable, Reusable), using tools such as Jupyter notebooks and R Markdown for organising your materials and GitHub, GitLab, Bitbucket, Figshare, Zenodo, OSF and others for sharing them openly will be presented. The main presentation will be delivered by Associate Professor Emerson M. Del Ponte, @edelponte, from Universidade Federal de Viçosa (UFV) Brazil on his experiences using research compendia and pre-prints for making data, materials and code open and available. A panel discussion will include Dr. Francis Gacenga, A/Prof Adam H. Sparks, A/Prof Emerson M. Del Ponte and Ms Belinda Weaver (Griffith University), @cloudaus. Attendees will then have the opportunity to create a research compendium using OSF using either their own materials, or a set of materials provided by us for this exercise. By the end of this workshop users will have learned what tools are available to make their research data, materials and code open and available. To aid in this, we have put together a website with more information from the workshop with further suggested reading on the topic of research compendia and other resources that can be useful for participants to refer to, https://re-produce-opendatamaterialscode.netlify.com/. We have created this website using these tools: blogdown, RStudio, GitHub and Netlify and released it under a Creative Commons Attribution-NonCommercial 4.0 International License, these materials are available through OSF, DOI 10.17605/OSF.IO/8CSZW. All of the code and materials are available from GitHub, https://github.com/adamhsparks/ReProduce_Open_Data_Materials_and_Cod... |
| Keywords | Open Data, Reproducibility, FAIR, Open Access, Research Data Management |
| ANZSRC Field of Research 2020 | 460908. Information systems organisation and management |
| Byline Affiliations | University of Southern Queensland |
| Federal University of Vicosa, Brazil |
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Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert J. and Garrett, Karen A.. 2014. "Climate change may have limited effect on global risk of potato late blight." Global Change Biology. 20 (12), pp. 3621-3631. https://doi.org/10.1111/gcb.12587A review on crop losses, epidemiology and disease management of rice brown spot to identify research priorities and knowledge gaps
Barnwal, M. K., Kotasthane, A., Magculia, N., Mukherjee, P. K., Savary, S., Sharma, A. K., Singh, H. B., Singh, U. S., Sparks, A. H., Variar, M. and Zaidi, N.. 2013. "A review on crop losses, epidemiology and disease management of rice brown spot to identify research priorities and knowledge gaps." European Journal of Plant Pathology. 136 (3), pp. 443-457. https://doi.org/10.1007/s10658-013-0195-6Taking transgenic rice drought screening to the field
Gaudin, Amelie C. M., Henry, Amelia, Sparks, Adam H. and Slamet-Loedin, Inez H.. 2013. "Taking transgenic rice drought screening to the field." Journal of Experimental Botany. 64 (1), pp. 109-117. https://doi.org/10.1093/jxb/ers313An economic assessment of the impact of mango pulp weevil on the agricultural sector of Palawan, Philippines
McKinley, Justin D., Sparks, Adam H., Pede, Valerien O. and Duff, Bart. 2012. "An economic assessment of the impact of mango pulp weevil on the agricultural sector of Palawan, Philippines." The Philippine Agricultural Scientist: an international journal of tropical agriculture and related sciences. 95 (3), pp. 286-292.Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease
Garrett, K. A., Forbes, G. A., Savary, S., Skelsey, P., Sparks, A. H., Valdivia, C., van Bruggen, A. H. C., Willocquet, L., Djurle, A., Duveiller, E., Eckersten, H., Pande, S., Vera Cruz, C. and Yuen, J.. 2011. "Complexity in climate-change impacts: an analytical framework for effects mediated by plant disease." Plant Pathology. 60 (1), pp. 15-30. https://doi.org/10.1111/j.1365-3059.2010.02409.xInternational agricultural research tackling the effects of global and climate changes on plant diseases in the developing world
Savary, Serge, Nelson, Andrew, Sparks, Adam H, Willocquet, Laetitia, Duveiller, Etienne, Mahaku, George, Forbes, Greg, Garrett, Karen A., Hodson, David, Padgham, Jon, Pande, Suresh, Sharma, Mamta, Yuen, Jonathan and Djurle, Annika. 2011. "International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world." Plant Disease: an international journal of applied plant pathology. 95 (10), pp. 1204-1216. https://doi.org/10.1094/PDIS-04-11-0316A metamodeling framework for extending the application domain of process-based ecological models
Sparks, Adam H., Forbes, Gregory A., Hijmans, Robert and Garrett, Karen A.. 2011. "A metamodeling framework for extending the application domain of process-based ecological models." Ecosphere. 2 (8). https://doi.org/10.1890/ES11-00128.1IT service management: a cross-national study of ITIL adoption
Marrone, Mauricio, Gacenga, Francis, Cater-Steel, Aileen and Kolbe, Lutz. 2014. "IT service management: a cross-national study of ITIL adoption." Communications of the Association for Information Systems. 34 (1), pp. 865-892. https://doi.org/10.17705/1cais.03449The HPC next door: enabling research outcomes using QCIF HPC facilities
Gacenga, Francis, Bell, Jason, Samalca, Irvin K. and Brieva, Daniel. 2014. "The HPC next door: enabling research outcomes using QCIF HPC facilities." eResearch Australasia 2014 Conference: Towards Unified Global Research. Melbourne, Australia 27 - 31 Oct 2014Pleasant encounters of the VM kind: leveraging on NeCTAR VMs to achieve research outcomes
Gacenga, Francis, Kelly, Nick and Rayment, Erin. 2014. "Pleasant encounters of the VM kind: leveraging on NeCTAR VMs to achieve research outcomes." eResearch Australasia 2014 Conference: Towards Unified Global Research. Melbourne, Australia 27 - 31 Oct 2014 Sydney, Australia.You don't know what you don't know: ethics and participant consent issues for eResearch users
Ostini, Jenny, Gacenga, Francis, Pocock, Celmara and Whiteside, Eliza. 2014. "You don't know what you don't know: ethics and participant consent issues for eResearch users." eResearch Australasia 2014 Conference: Towards Unified Global Research. Melbourne, Australia 27 - 31 Oct 2014 Sydney, Australia.A proposal and evaluation of a design method in design science research
Gacenga, Francis, Cater-Steel, Aileen, Toleman, Mark and Tan, Wui-Gee. 2012. "A proposal and evaluation of a design method in design science research." Electronic Journal of Business Research Methods. 10 (2), pp. 89-100.A performance measurement framework for IT service management
Gacenga, Francis Njoroge. 2013. A performance measurement framework for IT service management. PhD Thesis Doctor of Philosophy. University of Southern Queensland.Extending the IT service quality measurement framework through a systematic literature review
Lepmets, Marion, Cater-Steel, Aileen, Gacenga, Francis and Ras, Eric. 2012. "Extending the IT service quality measurement framework through a systematic literature review." Journal of Service Science Research. 4 (1), pp. 7-47. https://doi.org/10.1007/s12927-012-0001-6