Population genomics of Macrophomina spp. reveals cryptic host specialization and evidence for meiotic recombination

Article

Pennerman, K., Goldman, P., Dilla-Ermita, C., Ramos, G., Jaime, J., Lopez-Hernandez, J., Ramos, J., Aviles, M., Borrero, C., Gomez, A., Neal, J., Chilvers, M., Ortiz, V., Stukenbrock, E., Goldman, G., Mengitsu, A., Lopez-Nicora, H., Sacher, G., Vaghefi, N., ..., Henry, P.. 2025. "Population genomics of Macrophomina spp. reveals cryptic host specialization and evidence for meiotic recombination." Molecular Plant-Microbe Interactions. First Look. https://doi.org/10.1094/MPMI-03-25-0032-R
Article Title

Population genomics of Macrophomina spp. reveals cryptic host specialization and evidence for
meiotic recombination

ERA Journal ID2766
Article CategoryArticle
AuthorsPennerman, K., Goldman, P., Dilla-Ermita, C., Ramos, G., Jaime, J., Lopez-Hernandez, J., Ramos, J., Aviles, M., Borrero, C., Gomez, A., Neal, J., Chilvers, M., Ortiz, V., Stukenbrock, E., Goldman, G., Mengitsu, A., Lopez-Nicora, H., Sacher, G., Vaghefi, N., Kiss, L., Benz, J., Machado, A., Seijo, T., Peres, N., Martin, F., Broome, J., Ivors, K., Cole, G., Knapp, S., McFarlane, D., Mattner, S., Gambardella, M., Gluck-Thaler, E. and Henry, P.
Journal TitleMolecular Plant-Microbe Interactions
Journal CitationFirst Look
Article NumberFirst Look
Year2025
PublisherAmerican Phytopathological Society
ISSN0894-0282
1943-7706
Digital Object Identifier (DOI)https://doi.org/10.1094/MPMI-03-25-0032-R
Web Address (URL)https://apsjournals.apsnet.org/doi/10.1094/MPMI-03-25-0032-R
Abstract

Knowledge of the factors structuring populations of pathogenic fungi is fundamental to disease management efforts and basic biology. However, this crucial information is missing for many important pathogens, including broad host range and drought-associated pathogens from the globally distributed Macrophomina genus. The objectives of this work were to evaluate the evidence for host specialization, geographic adaptation, and recombination using a global survey of Macrophomina isolates from diverse geographic, temporal, and host sources. We obtained high-quality short-read sequence data for 463 Macrophomina spp. isolates, representing four putative species, collected from 91 host plant species and soil in 23 countries. Analysis of bi-allelic, single nucleotide polymorphismsrevealed high diversity, admixture, and equal mating type ratios suggesting on-going recombination. Although most tested isolates asymptomatically colonized strawberry, only strawberry-derived isolates caused disease on this host. These isolates were all in a single lineage, suggesting the ability to cause disease on strawberry is not widespread among M. phaseolina. Significant associations were also found between isolation from soybean plants and specific population clusters, suggesting that specialization for virulence or reproduction has also occurred for soybean. Geography × isolate genotype associations were weak, suggesting Macrophomina spp. were frequently trafficked between regions. Reference free whole genome comparisons support current boundaries among four Macrophomina species, and new molecular markers were designed to specifically identify each species. Contrary to expectations, M. phaseolina should be considered a single species with both specialist and generalist populations in which meiosis can maintain genetic diversity.

Article Publishing Charge (APC) FundingProject Funding
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020310704. Microbial genetics
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Poudel, Barsha, Shivas, Roger G., Adorada, Dante L., Barbetti, Martin J., Bithell, Sean L., Kelly, Lisa A., Moore, Natalie, Sparks, Adam H., Tan, Yu Pei, Thomas, Geoff, van Leur, Joop and Vaghefi, Niloofar. 2021. "Hidden diversity of Macrophomina associated with broadacre and horticultural crops in Australia." European Journal of Plant Pathology. 161, pp. 1-23. https://doi.org/10.1007/s10658-021-02300-0
Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex
Vaghefi, Niloofar, Shivas, Roger G., Sharma, Sandeep, Nelson, Scot C. and Pethybridge, Sarah J.. 2021. "Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex." Mycological Progress: international journal of fungal sciences. 20 (3), pp. 261-287. https://doi.org/10.1007/s11557-021-01666-z
Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales
Kiss, Levente, Vaghefi, Niloofar, Bransgrove, Kaylene, Dearnaley, John D. W., Takamatsu, Susumu, Tan, Yu Pei, Marston, Craig, Liu, Shu-Yan, Jin, Dan-Ni, Adorada, Dante L., Bailey, Jordan, Cabrera de Alvarez, Maria Graciela, Daly, Andrew, Dirchwolf, Pamela Maia, Jones, Lynne, Nguyen, Thuan Dat, Edwards, Jacqueline, Ho, Wellcome, Kelly, Lisa, ..., Braun, Uwe. 2020. "Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales." Frontiers in Microbiology. 11, pp. 1-31. https://doi.org/10.3389/fmicb.2020.01571
A fresh look at grape powdery mildew (Erysiphe necator) A and B genotypes revealed frequent mixed infections and only B genotypes in flag shoot samples
Csikos, Anett, Nemeth, Mark Z., Frenkel, Omer, Kiss, Levente and Vaczy, Kalman Zoltan. 2020. "A fresh look at grape powdery mildew (Erysiphe necator) A and B genotypes revealed frequent mixed infections and only B genotypes in flag shoot samples." Plants. 9 (9), pp. 1-12. https://doi.org/10.3390/plants9091156
Whole-Genome Data from Curtobacterium flaccumfaciens pv. flaccumfaciens Strains Associated with Tan Spot of Mungbean and Soybean Reveal Diverse Plasmid Profiles
Vaghefi, Niloofar, Adorada, Dante L., Huth, Lauren, Kelly, Lisa A., Poudel, Barsha, Young, Anthony and Sparks, Adam H.. 2021. "Whole-Genome Data from Curtobacterium flaccumfaciens pv. flaccumfaciens Strains Associated with Tan Spot of Mungbean and Soybean Reveal Diverse Plasmid Profiles." Molecular Plant-Microbe Interactions. 34 (10), pp. 1216-1222. https://doi.org/10.1094/MPMI-05-21-0116-A
Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean
Vaghefi, Niloofar, Adorada, Dante, Adorada, Encarnacion, Kelly, Lisa, Young, Anthony and Sparks, Adam. 2019. "Characterising the genotypic diversity of Curtobacterium flaccumfaciens pv. Flaccumfaciens, the cause of tan spot on mungbean." 2019 Australian Summer Grains Conference: Enduring Farm Profitability (ASCG 2019). Gold Coast, Australia 08 - 10 Jul 2019
What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?
Vaghefi, N., Adorada, D., Adorada, E., Kelly, L., Young, A. and Sparks, A.. 2019. "What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean?" 22nd Biennial Australasian Plant Pathology Society Conference (APPS 2019): Strong Foundations, Future Innovations. Melbourne, Australia 25 - 28 Nov 2019
Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum
Purushotham, Neeraj, Jones, Ashley, Poudel, Barsha, Nasim, Jamila, Adorada, Dante, Sparks, Adam, Schwessinger, Benjamin and Vaghefi, Niloofar. 2020. "Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum." Molecular Plant-Microbe Interactions. 33 (5), pp. 724-726. https://doi.org/10.1094/MPMI-12-19-0356-A
Fungal Planet description sheets: 1042-1111
Crous, P. W., Wingfield, M. J., Chooi, Y.-H., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano-Lira, J. F., Valenzuela-Lopez, N., Hubka, V., Shivas, R. G., Stchigel, A. M., Holdom, D. G., Jurjevic, Z., Kachalkin, A. V., Lebel, T., Lock, C., Martin, M. P., ..., Groenewald, J. Z.. 2020. "Fungal Planet description sheets: 1042-1111." Persoonia. 44, pp. 301-459. https://doi.org/10.3767/persoonia.2020.44.11
Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters
Jeffress, Sarah, Arun-Chinnappa, Kiruba, Stodart, Ben, Vaghefi, Niloofar, Tan, Yu Pei and Ash, Gavin. 2020. "Genome mining of the citrus pathogen Elsinoe fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters." PLoS One. 15 (5). https://doi.org/10.1371/journal.pone.0227396
A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)
Kusch, Stefan, Nemeth, Mark Z., Vaghefi, Niloofar, Ibrahim, Heba M.M., Panstruga, Ralph and Kiss, Levente. 2020. "A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper (Capsicum annuum)." Molecular Plant-Microbe Interactions. 33 (6), pp. 782-786. https://doi.org/10.1094/MPMI-02-20-0029-A
Re-visiting management options for charcoal rot in sorghum (updated)
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2019. "Re-visiting management options for charcoal rot in sorghum (updated)." GRDC Communities.
Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia
Vaghefi, Niloofar, Thompson, Susan M., Kimber, Rohan B.E., Thomas, Geoff J., Kant, Pragya, Barbetti, Martin J. and van Leur, Joop A.G.. 2020. "Phylogeny and pathogenicity of Stemphylium species associated with Fabaceae in Australia." Mycological Progress: international journal of fungal sciences. 19, pp. 381-396. https://doi.org/10.1007/s11557-020-01566-8
Fungal planet description sheets: 951–1041
Crous, P. W., Wingfield, M. J., Lombard, L., Roets, F., Swart, W. J., Alvarado, P., Carnegie, A. J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A. V., Baseia, I. G., Bellanger, J. -M., Bessette, A. E., Bessette, A. R., De la Pena-Lastra, S., Garcia, D., Gene, J., Pham, T. H. G., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 951–1041." Persoonia. 43, pp. 223-425. https://doi.org/10.3767/persoonia.2019.43.06
The Parauncinula polyspora Draft Genome Provides Insights into Patterns of Gene Erosion and Genome Expansion in Powdery Mildew Fungi
Frantzeskakis, Lamprinos, Nemeth, Mark Z., Barsoum, Mirna, Kusch, Stefan, Kiss, Levente, Takamatsu, Susumu and Panstruga, Ralph. 2019. "The Parauncinula polyspora Draft Genome Provides Insights into Patterns of Gene Erosion and Genome Expansion in Powdery Mildew Fungi." mBio. 10 (5), pp. 1-17. https://doi.org/10.1128/mBio.01692-19
Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers
Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, Anke. 2019. "Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers." Plant Pathology. 68 (7), pp. 1331-1336. https://doi.org/10.1111/ppa.13035
Genera of phytopathogenic fungi: GOPHY 3
Marin-Felix, Y., Hernandez-Restrepo, M., Iturrieta-Gonzalez, I., Garcia, D., Gene, J., Groenewald, J. Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R. K., Taylor, P. W. J., Ambers, C., Bonthond, G., Edwards, J., Krueger-Hadfield, S. A., Luangsa-ard, J. J., Morton, L., Moslemi, A., Sandoval-Denis, M., ..., Crous, P. W.. 2019. "Genera of phytopathogenic fungi: GOPHY 3." Studies in Mycology. 94, pp. 1-124. https://doi.org/10.1016/j.simyco.2019.05.001
Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin
Knight, Noel L., Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Secor, Gary A., Rivera, Viviana V., Hanson, Linda E., Nelson, Scot C. and Pethybridge, Sarah J.. 2019. "Genetic diversity and structure in regional Cercospora beticola populations from Beta vulgaris ssp. vulgaris suggest two clusters of separate origin." Phytopathology: International Journal of the American Phytopathological Society. 109 (7), pp. 1280-1292. https://doi.org/10.1094/PHYTO-07-18-0264-R
Phylogeny and taxonomy of Golovinomyces orontii revisited
Braun, U., Shin, H. D., Takamatsu, S., Meeboon, J., Kiss, L., Lebeda, A., Kitner, M. and Gotz, M.. 2019. "Phylogeny and taxonomy of Golovinomyces orontii revisited." Mycological Progress: international journal of fungal sciences. 18 (3), pp. 335-357. https://doi.org/10.1007/s11557-018-1453-y
Green fluorescent protein transformation sheds more light on a widespread mycoparasitic interaction
Nemeth, Mark Z., Pintye, Alexandra, Horvath, Aron N., Vagi, Pal, Kovacs, Gabor M., Gorfer, Markus and Kiss, Levente. 2019. "Green fluorescent protein transformation sheds more light on a widespread mycoparasitic interaction." Phytopathology: International Journal of the American Phytopathological Society. 109 (8), pp. 1404-1416. https://doi.org/10.1094/PHYTO-01-19-0013-R
Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris
Vaghefi, Niloofar, Silva, Alex, Koenick, Lori B. and Pethybridge, Sarah J.. 2019. "Genome resource for Neocamarosporium betae (syn. Pleospora betae), the cause of Phoma Leaf Spot and Root Rot on Beta vulgaris." Molecular Plant-Microbe Interactions. 32 (7), pp. 787-789. https://doi.org/10.1094/MPMI-12-18-0334-A
Ray blight of pyrethrum in Australia: a review of the current status and future opportunities
Bhuiyan, M. A. H. B., Vaghefi, N. and Taylor, P. W. J.. 2019. "Ray blight of pyrethrum in Australia: a review of the current status and future opportunities." Plant Pathology. 68 (4), pp. 620-627. https://doi.org/10.1111/ppa.13000
An international perspective on genetic structure and gene flow in Cercospora beticola populations
Knight, N. L., Vaghefi, N., Kikkert, J., Bolton, M. D., Secor, G. A., Hanson, L., Nelson, S. C. and Pethybridge, S. J.. 2018. "An international perspective on genetic structure and gene flow in Cercospora beticola populations." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States. American Phytopathological Society.
Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA
Koenick, L., Knight, N. L., Vaghefi, N., du Toit, L. and Pethybridge, S. J.. 2018. "Genetic structure of Phoma betae populations on Beta vulgaris in New York and Washington States, USA." 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 St Paul, United States.
A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys
Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium. Adelaide, Australia 04 - 08 Sep 2018 Australia.
Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Development of microsatellite markers for quantifying genetic diversity of Pleospora betae
Koenick, Lori, Vaghefi, Niloofar, Knight, Noel L., du Toit, Lindsey and Pethybridge, Sarah J.. 2017. "Development of microsatellite markers for quantifying genetic diversity of Pleospora betae." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.
Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2018. "Temporal genetic differentiation of Cercospora beticola populations in New York Table beet fields." Plant Disease: an international journal of applied plant pathology. 102 (11), pp. 2074-2082. https://doi.org/10.1094/PDIS-01-18-0175-RE
First report of powdery mildew on goji berry (Lycium barbarum) caused by arthrocladiella mougeotii in Queensland, Australia
Kiss, L., Stuart, K., Grigg, J., Calvert, J. and Dearnaley, J. D. W.. 2018. "First report of powdery mildew on goji berry (Lycium barbarum) caused by arthrocladiella mougeotii in Queensland, Australia." Plant Disease: an international journal of applied plant pathology. 102 (2), p. 446. https://doi.org/10.1094/PDIS-07-17-1055-PDN
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata
Wingfield, Brenda D., Bills, Gerald F., Dong, Yang, Huang, Wenli, Nel, Wilma J., Swalarsk-Parry, Benedicta S., Vaghefi, Niloofar, Wilken, Markus P., An, Zhiqiang, de Beer, Z. Wilhelm, De Vos, Lieschen, Chen, Li, Duong, Tuan A., Gao, Yun, Hammerbacher, Almuth, Kikkert, Julie R., Li, Yan, Li, Huiying, Li, Kuan, ..., Zhang, Xiaoling. 2018. "Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata." IMA Fungus: the global mycological journal. 9 (1), pp. 199-223. https://doi.org/10.5598/imafungus.2018.09.01.13
Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]
Adorada, Dante, Kelly, Lisa, Vaghefi, Niloofar and Sparks, Adam H,. 2018. "Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]." GRDC Field Crop Diseases Community of Practice. 1 October 2018, pp. 1-8.
From leaf to continent: the multi-scale distribution of an invasive cryptic pathogen complex on oak
Desprez-Loustau, Marie-Laure, Massot, Marie, Toigo, Maude, Fort, Tania, Aday Kaya, Ayse Gulden, Boberg, Johanna, Braun, Uwe, Capdevielle, Xavier, Cech, Thomas, Chandelier, Anne, Christova, Petya, Corcobado, Tamara, Dogmus, Tugba, Dutech, Cyril, Fabreguettes, Olivier, Faivre d'Arcier, Julie, Gross, Andrin, Horta Jung, Marilia, Iturritxa, Eugenia, ..., Tack, Ayco J.M.. 2018. "From leaf to continent: the multi-scale distribution of an invasive cryptic pathogen complex on oak." Fungal Ecology. 36, pp. 39-50. https://doi.org/10.1016/j.funeco.2018.08.001
Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia
Kiss, Levente, Kovacs, Gabor M., Boka, Karoly, Bohar, Gyula, Boharne, Krisztina Varga, Nemeth, Mark Z., Takamatsu, Susumu, Shin, Hyeon-Dong, Hayova, Vera, Nischwitz, Claudia, Seier, Marion K., Evans, Harry C., Cannon, Paul F., Ash, Gavin James, Shivas, Roger G. and Muller-Scharer, Heinz. 2018. "Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia." Scientific Reports. 8, pp. 1-14. https://doi.org/10.1038/s41598-018-29102-5
First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA
Hay, F., Vaghefi, N., Strickland, D., Hadad, R. and Pethybridge, S.. 2018. "First report of Colletotrichum fioriniae causing anthracnose of elephant garlic (Allium ampeloprasum var. ampeloprasum) in New York, USA." New Disease Reports. 38 (1), pp. 1-1. https://doi.org/10.5197/j.2044-0588.2018.038.001
Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]
Adorada, Dante, Vaghefi, Niloofar and Sparks, Adam. 2018. "Re-visiting management options for charcoal rot in sorghum [eXtension AUS Field Crop Diseases, 19 March 2018 - Online community]." eXtension AUS Field Crop Diseases. 19 March 2018, pp. 1-8.
Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris
Vaghefi, Niloofar, Kikkert, Julie R., Hay, Frank S., Carver, Gavriela D., Koenick, Lori B., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2018. "Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris." Fungal Biology. 122 (4), pp. 264-282. https://doi.org/10.1016/j.funbio.2018.01.008
Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe
Guarnaccia, V., Groenewald, J. Z., Woodhall, J., Armengol, J., Cinelli, T., Eichmeier, A., Ezra, D., Fontaine, F., Gramaje, D., Gutierrez-Aguirregabiria, A., Kaliterna, J., Kiss, L., Larignon, P., Luque, J., Mugnai, L., Naor, V., Raposo, R., Sandor, E., Vaczy, K. Z. and Crous, P. W.. 2018. "Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe." Persoonia. 40, pp. 135-153. https://doi.org/10.3767/persoonia.2018.40.06
First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note
Hay, F. S., Vaghefi, N., Ivy, A. and Pethybridge, S. J.. 2017. "First report of carrot root rot caused by Rhexocercosporidium carotae in the United States - a disease note." Plant Disease: an international journal of applied plant pathology. 101 (1), pp. 248-248. https://doi.org/10.1094/PDIS-05-16-0656-PDN
Dothiorella omnivora isolated from grapevine with trunk disease symptoms in Hungary
Vaczy, Kalman Zoltan, Nemeth, Mark Z., Csikos, Anett, Kovacs, Gabor M. and Kiss, Levente. 2018. "Dothiorella omnivora isolated from grapevine with trunk disease symptoms in Hungary." European Journal of Plant Pathology. 150 (3), pp. 817-824. https://doi.org/10.1007/s10658-017-1323-5
First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York
Hay, F. S., Maloney, E., Vaghefi, N., Shivas, R. G and Pethybridge, S. J. 2017. "First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York." Plant Disease: an international journal of applied plant pathology. 101 (11), pp. 1953-1953. https://doi.org/10.1094/PDIS-05-17-0648-PDN
Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015
Pethybridge, S. J., Vaghefi, N. and Kikkert, J.. 2016. "Efficacy of fungicides for the control of Cercospora leaf spot in processing table beet, 2015." Plant Disease Management Reports. 3 (Report No. 10), pp. 1-1.
Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Horticultural characteristics and susceptibility of table beet cultivars to Cercospora Leaf Spot in New York." Horttechnology. 27 (4), pp. 530-538.
Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata
Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., ..., Wingfield, Michael J.. 2015. "Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata." IMA Fungus: the global mycological journal. 6 (1), pp. 233-248. https://doi.org/10.5598/imafungus.2015.06.01.15
Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields
Vaghefi, Niloofar, Hay, Frank S., Ades, Peter K., Pethybridge, Sarah Jane, Ford, Rebecca and Taylor, Paul W. J.. 2015. "Rapid changes in the genetic composition of Stagonosporopsis tanaceti population in Australian pyrethrum fields." Phytopathology: International Journal of the American Phytopathological Society. 105 (3), pp. 358-369. https://doi.org/10.1094/PHYTO-08-14-0212-R
No indication of strict host associations in a widespread mycoparasite: Grapevine Powdery Mildew (Erysiphe necator) is attacked by phylogenetically distant Ampelomyces strains in the field
Pintye, Alexandra, Bereczky, Zsolt, Kovacs, Gabor M., Nagy, Laszlo G., Xu, Xiangming, Legler, Sara Elisabetta, Vaczy, Zsuzsanna, Vaczy, Kalman Zoltan, Caffi, Tito, Rossi, Vittorio and Kiss, Levente. 2012. "No indication of strict host associations in a widespread mycoparasite: Grapevine Powdery Mildew (Erysiphe necator) is attacked by phylogenetically distant Ampelomyces strains in the field." Phytopathology: International Journal of the American Phytopathological Society. 102 (7), pp. 707-716. https://doi.org/10.1094/PHYTO-10-11-0270
Detection and quantification of Leveillula taurica growth in pepper leaves
Zheng, Zheng, Nonomura, Teruo, Boka, Karoly, Matsuda, Yoshinori, Visser, Richard G. F., Toyoda, Hideyoshi, Kiss, Levente and Bai, Yuling. 2013. "Detection and quantification of Leveillula taurica growth in pepper leaves." Phytopathology: International Journal of the American Phytopathological Society. 103 (6), pp. 623-632. https://doi.org/10.1094/PHYTO-08-12-0198-R
New insights into the life cycle of the wheat powdery mildew: direct observation of ascosporic infection in Blumeria graminis f. sp. tritici
Jankovics, Tünde, Komaromi, Judit, Fabian, Attila, Jager, Katalin, Vida, Gyula and Kiss, Levente. 2015. "New insights into the life cycle of the wheat powdery mildew: direct observation of ascosporic infection in Blumeria graminis f. sp. tritici." Phytopathology: International Journal of the American Phytopathological Society. 105 (6), pp. 797-804. https://doi.org/10.1094/PHYTO-10-14-0268-R
Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A., Nelson, Scot C. and Pethybridge, Sarah J.. 2017. "Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing." PLoS One. 12 (10). https://doi.org/10.1371/journal.pone.0186488
Abscisic acid activates pathogenesis-related defense gene signaling in lentils
Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270
Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii
Vaghefi, Niloofar, Nelson, Scot C., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii." Scientific Reports. 7. https://doi.org/10.1038/s41598-017-01929-4
De novo genome assembly of Cercospora beticola for microsatellite marker development and validation
Vaghefi, Niloofar, Kikkert, Julie R., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2017. "De novo genome assembly of Cercospora beticola for microsatellite marker development and validation." Fungal Ecology. 26, pp. 125-134. https://doi.org/10.1016/j.funeco.2017.01.006
Management of cercospora leaf spot in conventional and organic table beet production
Pethybridge, Sarah J., Vaghefi, Niloofar and Kikkert, Julie R.. 2017. "Management of cercospora leaf spot in conventional and organic table beet production." Plant Disease: an international journal of applied plant pathology. 101 (9), pp. 1642-1651. https://doi.org/10.1094/PDIS-04-17-0528-RE
Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management
Vaghefi, N., Kikkert, J. and Pethybridge, S.. 2016. "Structure of Cercospora beticola populations in organic and conventional table beet production in New York and implications for disease management." 76th Annual Meeting of the Northeastern Division: The American Phytopathological Society. Ithaca, United States 19 - 21 Oct 2016 United States. American Phytopathological Society. https://doi.org/10.1094/PHYTO-107-2-S2.5
Occurrence of grey mould on Bucida buceras, a tree of subtropical origin, under indoor conditions - a disease note
Richweisz, A., Nemeth, M. Z., Kiss, L. and Ersek, T.. 2015. "Occurrence of grey mould on Bucida buceras, a tree of subtropical origin, under indoor conditions - a disease note." Acta Phytopathologica et Entomologica Hungarica. 50 (1). https://doi.org/10.1556/038.50.2015.1.1
Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia
Vaghefi, N., Hay, F. S., Ades, P. K., Pethybridge, S. J., Ford, R. and Taylor, P. W. J.. 2014. "Phylogenetic and population genetic analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia." 10th International Mycological Congress (IMC10 2014). Bangkok, Thailand 03 - 08 Aug 2014
Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W.. 2012. "Taxonomic reassessment of the ray blight pathogen of pyrethrum in Australia." 2012 American Phytopathological Society Annual Meeting (APS 2012). Rhode Island, United States of America 04 - 08 Aug 2012 United States. American Phytopathological Society.
Foreword: special issue on fungal grapevine diseases
Kiss, Levente, Holb, Imre J., Rossi, Vittorio, Cadle-Davidson, Lance and Jeger, Michael J.. 2016. "Foreword: special issue on fungal grapevine diseases." European Journal of Plant Pathology. 144 (4), pp. 693-694. https://doi.org/10.1007/s10658-015-0844-z
Incidence and pathogenicity of Didymella americana on table beet in new york
Vaghefi, Niloofar, Kikkert, Julie R. and Pethybridge, Sarah J.. 2016. "Incidence and pathogenicity of Didymella americana on table beet in new york." Plant Health Progress. 17, pp. 270-272. https://doi.org/10.1094/PHP-BR-16-0064
A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis
Vaghefi, Niloofar, Mustafa, Barkat M., Dulal, Nabeen, Selby-Pham, Jamie, Taylor, Paul W. J. and Ford, Rebecca. 2013. "A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis." Phytopathologia Mediterranea. 52 (1), pp. 192-201.
A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov.
Barimani, M., Pethybridge, S. J., Vaghefi, N., Hay, F. S. and Taylor, P. W. J.. 2013. "A new anthracnose disease of pyrethrum caused by Colletotrichum tanaceti sp. nov." Plant Pathology. 62 (6), pp. 1248-1257. https://doi.org/10.1111/ppa.12054
Stagonosporopsis spp. associated with ray blight disease of Asteraceae
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W. and Taylor, P. W. J.. 2012. "Stagonosporopsis spp. associated with ray blight disease of Asteraceae." Australasian Plant Pathology. 41 (6), pp. 675-686. https://doi.org/10.1007/s13313-012-0161-3
Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields
Vaghefi, Niloofar, Ades, Peter K., Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2015. "Identification of the MAT1 locus in Stagonosporopsis tanaceti, and exploring its potential for sexual reproduction in Australian pyrethrum fields." Fungal Biology. 119 (5), pp. 408-419. https://doi.org/10.1016/j.funbio.2014.04.004
Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight
Vaghefi, Niloofar, Pethybridge, Sarah J., Hay, Frank S., Ford, Rebecca, Nicolas, Marc E. and Taylor, Paul W. J.. 2016. "Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight." Australasian Plant Pathology. 45 (6), pp. 561-570. https://doi.org/10.1007/s13313-016-0446-z
Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae
Vaghefi, Niloofar, Hay, Frank S., Pethybridge, Sarah J., Ford, Rebecca and Taylor, Paul W. J.. 2016. "Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae." European Journal of Plant Pathology. 146 (3), pp. 581-595. https://doi.org/10.1007/s10658-016-0944-4
Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York
Vaghefi, Niloofar, Hay, Frank S., Kikkert, Julie and Pethybridge, Sarah J.. 2016. "Genotypic diversity and resistance to azoxystrobin of Cercospora beticola on processing table beet in New York." Plant Disease: an international journal of applied plant pathology. 100 (7), pp. 1466-1473. https://doi.org/10.1094/PDIS-09-15-1014-RE
First report of Oidium longipes as the causal agent of Petunia Powdery Mildew in the United Kingdom
Kiss, L. and Bereczky, Z.. 2011. "First report of Oidium longipes as the causal agent of Petunia Powdery Mildew in the United Kingdom." Plant Disease: an international journal of applied plant pathology. 95 (3), p. 361. https://doi.org/10.1094/PDIS-09-10-0680
Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi
Kiss, Levente, Pintye, Alexandra, Kovacs, Gabor M., Jankovics, Tunde, Fontaine, Michael C., Harvey, Nick, Xu, Xiangming, Nicot, Philippe C., Bardin, Marc, Shykoff, Jacqui A. and Giraud, Tatiana. 2011. "Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi." Molecular Ecology. 20 (7), pp. 1492-1507. https://doi.org/10.1111/j.1365-294X.2011.05007.x
Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe
Gladieux, Pierre, Giraud, Tatiana, Kiss, Levente, Genton, Benjamin J., Jonot, Odile and Shykoff, Jacqui A.. 2011. "Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe." Biological Invasions. 13 (4), pp. 933-944. https://doi.org/10.1007/s10530-010-9880-y
Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level
Li, Chengwei, Faino, Luigi, Dong, Lin, Fan, Junmei, Kiss, Levente, de Giovanni, Claudio, Lebeda, Ales, Scott, John, Matsuda, Yoshinori, Toyoda, Hideyoshi, Lindhout, Pim, Visser, Richard G. F., Bonnema, Guusje and Bai, Yuling. 2012. "Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level." Molecular Plant Pathology. 13 (2), pp. 148-159. https://doi.org/10.1111/j.1364-3703.2011.00737.x
Variation in the nrDNA ITS sequences of some powdery mildew species: do routine molecular identification procedures hide valuable information?
Kovacs, Gabor M., Jankovics, Tunde and Kiss, Levente. 2011. "Variation in the nrDNA ITS sequences of some powdery mildew species: do routine molecular identification procedures hide valuable information?" European Journal of Plant Pathology. 131 (1), pp. 135-141. https://doi.org/10.1007/s10658-011-9793-3
A hyperparasite affects the population dynamics of a wild plant pathogen
Tollenaere, C., Pernechele, B., Makinen, H. S., Parratt, S. R., Nemeth, M. Z., Kovacs, G. M., Kiss, L., Tack, A. J. M. and Laine, A.-L.. 2014. "A hyperparasite affects the population dynamics of a wild plant pathogen." Molecular Ecology. 23 (23), pp. 5877-5887. https://doi.org/10.1111/mec.12908
First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) I. The Microsphaera lineage
Takamatsu, Susumu, Ito, Hanako, Shiroya, Yoshiaki, Kiss, Levente and Heluta, Vasyl. 2015. "First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) I. The Microsphaera lineage." Mycologia. 107 (3), pp. 475-489. https://doi.org/10.3852/15-007
Puccinia komarovii var. glanduliferae var. nov.: a fungal agent for the biological control of Himalayan balsam (Impatiens glandulifera)
Tanner, Robert A., Ellison, Carol A., Seier, Marion K., Kovacs, Gabor M., Kassai-Jager, Edit, Bereczky, Zsolt, Varia, Sonal, Djeddour, Djami, Singh, Mool Chand, Csiszar, Agnes, Csontos, Péter, Kiss, Levente and Evans, Harry C.. 2014. "Puccinia komarovii var. glanduliferae var. nov.: a fungal agent for the biological control of Himalayan balsam (Impatiens glandulifera)." European Journal of Plant Pathology. 141 (2), pp. 247-266. https://doi.org/10.1007/s10658-014-0539-x
First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) II. The Uncinula lineage
Takamatsu, Susumu, Ito, Hanako, Shiroya, Yoshiaki, Kiss, Levente and Heluta, Vasyl. 2015. "First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) II. The Uncinula lineage." Mycologia. 107 (5), pp. 903-914. https://doi.org/10.3852/15-062
Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia
Gaudeul, Myriam, Giraud, Tatiana, Kiss, Levente and Shykoff, Jacqui A.. 2011. "Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia." PLoS One. 6 (3). https://doi.org/10.1371/journal.pone.0017658
New records of microcyclic conidiogenesis in some powdery mildew fungi
Pintye, Alexandra, Legler, Sara Elisabetta and Kiss, Levente. 2011. "New records of microcyclic conidiogenesis in some powdery mildew fungi." Mycoscience. 52 (3), pp. 213-216. https://doi.org/10.1007/s10267-010-0093-0
Peach rusty spot is caused by the apple powdery mildew fungus, Podosphaera leucotricha
Jankovics, Tünde, Dolovac, Nenad, Bulajic, Aleksandra, Krstic, Branka, Pascal, Thierry, Bardin, Marc, Nicot, Philippe C. and Kiss, Levente. 2011. "Peach rusty spot is caused by the apple powdery mildew fungus, Podosphaera leucotricha." Plant Disease: an international journal of applied plant pathology. 95 (6), pp. 719-724. https://doi.org/10.1094/PDIS-10-10-0711
Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi
Kiss, Levente. 2012. "Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi." University of Adelaide. 109 (27), p. 1811. https://doi.org/10.1073/pnas.1207143109
Host phenology and geography as drivers of differentiation in generalist fungal mycoparasites
Pintye, Alexandra, Ropars, Jeanne, Harvey, Nick, Shin, Hyeon Dong, Leyronas, Christel, Nicot, Philippe C., Giraud, Tatiana and Kiss, Levente. 2015. "Host phenology and geography as drivers of differentiation in generalist fungal mycoparasites." PLoS One. 10 (3). https://doi.org/10.1371/journal.pone.0120703
Does the parasite follow its host? Occurrence of morphologically barely distinguishable powdery mildew anamorphs on Oenothera spp. in different parts of the world
Bereczky, Zsolt, Pintye, Alexandra, Csontos, Peter, Braun, Uwe and Kiss, Levente. 2015. "Does the parasite follow its host? Occurrence of morphologically barely distinguishable powdery mildew anamorphs on Oenothera spp. in different parts of the world." Mycoscience. 56 (3), pp. 267-272. https://doi.org/10.1016/j.myc.2014.08.001
One stop shop: backbone trees for important phytopathogenic genera: I (2014)
Hyde, Kevin D., Nilsson, R. Henrik, Alias, S. Aisyah, Ariyawansa, Hiran A., Blair, Jaime E., Cai, Lei, de Cock, Arthur W. A. M., Dissanayake, Asha J., Glockling, Sally L., Goonasekara, Ishani D., Gorczak, Michal, Hahn, Matthias, Jayawardena, Ruvishika S., van Kan, Jan A. L., Lawrence, Matthew H., Levesque, C. Andre, Li, Xinghong, Liu, Jian-Kui, Maharachchikumbura, Sajeewa S. N., ..., Zhou, Nan. 2014. "One stop shop: backbone trees for important phytopathogenic genera: I (2014)." Fungal Diversity. 67 (1), pp. 21-125. https://doi.org/10.1007/s13225-014-0298-1
First detection of tomato powdery mildew caused by Oidium neolycopersici in South Africa
Lebeda, A., Mieslerova, B., Jankovics, T., Kiss, L. and van der Linde, E. J.. 2015. "First detection of tomato powdery mildew caused by Oidium neolycopersici in South Africa." South African Journal of Botany. 99, pp. 153-157. https://doi.org/10.1016/j.sajb.2015.03.196
Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii
Vaghefi, Niloofar, Pethybridge, Sarah J., Shivas, Roger G. and Nelson, Scot C.. 2016. "Confirmation of Paracercospora egenula causing leaf spot of eggplant in Hawaii." Australasian Plant Disease Notes. 11 (1), pp. 35-37. https://doi.org/10.1007/s13314-016-0223-4
Refining a method for ascospore viability testing in overwintering chasmothecia of Erysiphe necator
Vagi, Pal, Caffi, Tito, Vaczy, Kalman Zoltan, Nemeth, Mark Z. and Kiss, Levente. 2016. "Refining a method for ascospore viability testing in overwintering chasmothecia of Erysiphe necator." European Journal of Plant Pathology. 144 (4), pp. 799-802. https://doi.org/10.1007/s10658-015-0797-2
Sporulation rate in culture and mycoparasitic activity, but not mycohost specificity, are the key factors for selecting Ampelomyces strains for biocontrol of grapevine powdery mildew (Erysiphe necator)
Legler, Sara Elisabetta, Pintye, Alexandra, Caffi, Tito, Gulyas, Szilvia, Bohar, Gyula, Rossi, Vittorio and Kiss, Levente. 2016. "Sporulation rate in culture and mycoparasitic activity, but not mycohost specificity, are the key factors for selecting Ampelomyces strains for biocontrol of grapevine powdery mildew (Erysiphe necator)." European Journal of Plant Pathology. 144 (4), pp. 723-736. https://doi.org/10.1007/s10658-015-0834-1
Molecular identification and pathogenicity assessment of a rust fungus infecting common ragweed (Ambrosia artemisiifolia) in its native North American range
Kassai-Jager, Edit, Seier, Marion K., Evans, Harry C. and Kiss, Levente. 2016. "Molecular identification and pathogenicity assessment of a rust fungus infecting common ragweed (Ambrosia artemisiifolia) in its native North American range." European Journal of Plant Pathology. 145 (1), pp. 81-87. https://doi.org/10.1007/s10658-015-0815-4