Variation in the nrDNA ITS sequences of some powdery mildew species: do routine molecular identification procedures hide valuable information?

Article

Kovacs, Gabor M., Jankovics, Tunde and Kiss, Levente. 2011. "Variation in the nrDNA ITS sequences of some powdery mildew species: do routine molecular identification procedures hide valuable information?" European Journal of Plant Pathology. 131 (1), pp. 135-141. https://doi.org/10.1007/s10658-011-9793-3
Article Title

Variation in the nrDNA ITS sequences of some powdery mildew species: do routine molecular identification procedures hide valuable information?

ERA Journal ID2587
Article CategoryArticle
AuthorsKovacs, Gabor M. (Author), Jankovics, Tunde (Author) and Kiss, Levente (Author)
Journal TitleEuropean Journal of Plant Pathology
Journal Citation131 (1), pp. 135-141
Number of Pages7
Year2011
PublisherSpringer
Place of PublicationNetherlands
ISSN0929-1873
1573-8469
Digital Object Identifier (DOI)https://doi.org/10.1007/s10658-011-9793-3
Web Address (URL)http://download.springer.com/static/pdf/457/art%253A10.1007%252Fs10658-011-9793-3.pdf?originUrl=http%3A%2F%2Flink.springer.com%2Farticle%2F10.1007%2Fs10658-011-9793-3&token2=exp=1496210298~acl=%2Fstatic%2Fpdf%2F457%2Fart%25253A10.1007%25252Fs10658-011-979
Abstract

During the past years, nrDNA ITS sequences have supported the identification of many powdery mildew fungi because comprehensive analyses showed that differences in these sequences have always correlated with the delimitation of different species and formae speciales of the Erysiphales. Published data, obtained using direct sequencing of the PCR products, suggested that even one to five nucleotide differences in the ITS sequences delimit different, albeit closely related, species, and/or indicate differences in host range patterns. Here we show that such differences in the ITS sequences can be detected even in a single sample of a powdery mildew fungus. We sequenced the ITS region in 17 samples, representing six powdery mildew species, both directly and after cloning the PCR products. Among these, samples of O. longipes exhibited two or three, samples of O. neolycopersici three or four, those of an Oidium sp. from Chelidonium majus up to seven, and a sample of another Oidium sp. from Passiflora caerulea two different ITS types determined after cloning. No ITS nucleotide polymorphisms were found in samples of O. lycopersici and Erysiphe aquilegiae. This suggests that some powdery mildew taxa are more variable at the ITS level than others. Thus, although the ITS sequences determined by direct sequencing represent robust data useful in delimitation and phylogenetic analysis of distinct species of the Erysiphales, these need to be used with precaution, and preferably determined after cloning, especially when dealing with closely related taxa at species and sub-species levels. With this method a hitherto undetected genetic diversity of powdery mildews can be revealed.

KeywordsErysiphales; GenBank; ITS polymorphism; paralogue sequences; applied microbiology and biotechnology; molecular techniques; microbial diseases and parasites; plant pathology; fungal pathogens and diseases; plant science; biochemistry; molecular biology; plant/microbe interactions; plant science; plant pathology and symbioses; plant pathology; fungi - general; diseases;
ANZSRC Field of Research 2020310509. Genomics
310705. Mycology
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Byline AffiliationsHungarian Academy of Sciences, Hungary
Institution of OriginUniversity of Southern Queensland
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Li, Chengwei, Faino, Luigi, Dong, Lin, Fan, Junmei, Kiss, Levente, de Giovanni, Claudio, Lebeda, Ales, Scott, John, Matsuda, Yoshinori, Toyoda, Hideyoshi, Lindhout, Pim, Visser, Richard G. F., Bonnema, Guusje and Bai, Yuling. 2012. "Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level." Molecular Plant Pathology. 13 (2), pp. 148-159. https://doi.org/10.1111/j.1364-3703.2011.00737.x
A hyperparasite affects the population dynamics of a wild plant pathogen
Tollenaere, C., Pernechele, B., Makinen, H. S., Parratt, S. R., Nemeth, M. Z., Kovacs, G. M., Kiss, L., Tack, A. J. M. and Laine, A.-L.. 2014. "A hyperparasite affects the population dynamics of a wild plant pathogen." Molecular Ecology. 23 (23), pp. 5877-5887. https://doi.org/10.1111/mec.12908
First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) I. The Microsphaera lineage
Takamatsu, Susumu, Ito, Hanako, Shiroya, Yoshiaki, Kiss, Levente and Heluta, Vasyl. 2015. "First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) I. The Microsphaera lineage." Mycologia. 107 (3), pp. 475-489. https://doi.org/10.3852/15-007
Puccinia komarovii var. glanduliferae var. nov.: a fungal agent for the biological control of Himalayan balsam (Impatiens glandulifera)
Tanner, Robert A., Ellison, Carol A., Seier, Marion K., Kovacs, Gabor M., Kassai-Jager, Edit, Bereczky, Zsolt, Varia, Sonal, Djeddour, Djami, Singh, Mool Chand, Csiszar, Agnes, Csontos, Péter, Kiss, Levente and Evans, Harry C.. 2014. "Puccinia komarovii var. glanduliferae var. nov.: a fungal agent for the biological control of Himalayan balsam (Impatiens glandulifera)." European Journal of Plant Pathology. 141 (2), pp. 247-266. https://doi.org/10.1007/s10658-014-0539-x
First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) II. The Uncinula lineage
Takamatsu, Susumu, Ito, Hanako, Shiroya, Yoshiaki, Kiss, Levente and Heluta, Vasyl. 2015. "First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae) II. The Uncinula lineage." Mycologia. 107 (5), pp. 903-914. https://doi.org/10.3852/15-062
Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia
Gaudeul, Myriam, Giraud, Tatiana, Kiss, Levente and Shykoff, Jacqui A.. 2011. "Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia." PLoS One. 6 (3). https://doi.org/10.1371/journal.pone.0017658
New records of microcyclic conidiogenesis in some powdery mildew fungi
Pintye, Alexandra, Legler, Sara Elisabetta and Kiss, Levente. 2011. "New records of microcyclic conidiogenesis in some powdery mildew fungi." Mycoscience. 52 (3), pp. 213-216. https://doi.org/10.1007/s10267-010-0093-0
Peach rusty spot is caused by the apple powdery mildew fungus, Podosphaera leucotricha
Jankovics, Tünde, Dolovac, Nenad, Bulajic, Aleksandra, Krstic, Branka, Pascal, Thierry, Bardin, Marc, Nicot, Philippe C. and Kiss, Levente. 2011. "Peach rusty spot is caused by the apple powdery mildew fungus, Podosphaera leucotricha." Plant Disease: an international journal of applied plant pathology. 95 (6), pp. 719-724. https://doi.org/10.1094/PDIS-10-10-0711
Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi
Kiss, Levente. 2012. "Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi." University of Adelaide. 109 (27), p. 1811. https://doi.org/10.1073/pnas.1207143109
Host phenology and geography as drivers of differentiation in generalist fungal mycoparasites
Pintye, Alexandra, Ropars, Jeanne, Harvey, Nick, Shin, Hyeon Dong, Leyronas, Christel, Nicot, Philippe C., Giraud, Tatiana and Kiss, Levente. 2015. "Host phenology and geography as drivers of differentiation in generalist fungal mycoparasites." PLoS One. 10 (3). https://doi.org/10.1371/journal.pone.0120703
Does the parasite follow its host? Occurrence of morphologically barely distinguishable powdery mildew anamorphs on Oenothera spp. in different parts of the world
Bereczky, Zsolt, Pintye, Alexandra, Csontos, Peter, Braun, Uwe and Kiss, Levente. 2015. "Does the parasite follow its host? Occurrence of morphologically barely distinguishable powdery mildew anamorphs on Oenothera spp. in different parts of the world." Mycoscience. 56 (3), pp. 267-272. https://doi.org/10.1016/j.myc.2014.08.001
First detection of tomato powdery mildew caused by Oidium neolycopersici in South Africa
Lebeda, A., Mieslerova, B., Jankovics, T., Kiss, L. and van der Linde, E. J.. 2015. "First detection of tomato powdery mildew caused by Oidium neolycopersici in South Africa." South African Journal of Botany. 99, pp. 153-157. https://doi.org/10.1016/j.sajb.2015.03.196
Refining a method for ascospore viability testing in overwintering chasmothecia of Erysiphe necator
Vagi, Pal, Caffi, Tito, Vaczy, Kalman Zoltan, Nemeth, Mark Z. and Kiss, Levente. 2016. "Refining a method for ascospore viability testing in overwintering chasmothecia of Erysiphe necator." European Journal of Plant Pathology. 144 (4), pp. 799-802. https://doi.org/10.1007/s10658-015-0797-2
Sporulation rate in culture and mycoparasitic activity, but not mycohost specificity, are the key factors for selecting Ampelomyces strains for biocontrol of grapevine powdery mildew (Erysiphe necator)
Legler, Sara Elisabetta, Pintye, Alexandra, Caffi, Tito, Gulyas, Szilvia, Bohar, Gyula, Rossi, Vittorio and Kiss, Levente. 2016. "Sporulation rate in culture and mycoparasitic activity, but not mycohost specificity, are the key factors for selecting Ampelomyces strains for biocontrol of grapevine powdery mildew (Erysiphe necator)." European Journal of Plant Pathology. 144 (4), pp. 723-736. https://doi.org/10.1007/s10658-015-0834-1
Molecular identification and pathogenicity assessment of a rust fungus infecting common ragweed (Ambrosia artemisiifolia) in its native North American range
Kassai-Jager, Edit, Seier, Marion K., Evans, Harry C. and Kiss, Levente. 2016. "Molecular identification and pathogenicity assessment of a rust fungus infecting common ragweed (Ambrosia artemisiifolia) in its native North American range." European Journal of Plant Pathology. 145 (1), pp. 81-87. https://doi.org/10.1007/s10658-015-0815-4
HAT-P-57b: A Short-period Giant Planet Transiting a Bright Rapidly Rotating A8V Star Confirmed Via Doppler Tomography
Hartman, J. D., Bakos, G. A., Buchhave, L. A., Torres, G., Latham, D. W., Kovacs, G., Bhatti, W., Csubry, Z., de Val-Borro, M., Penev, K., Huang, C. X., Beky, B., Bieryla, A., Quinn, S. N., Howard, A. W., Marcy, G. W., Johnson, J. A., Isaacson, H., Fischer, D. A., ..., Sari, P.. 2015. "HAT-P-57b: A Short-period Giant Planet Transiting a Bright Rapidly Rotating A8V Star Confirmed Via Doppler Tomography." The Astronomical Journal. 150 (6), pp. 1-17. https://doi.org/10.1088/0004-6256/150/6/197
HAT-P-56b: An Inflated Massive Hot Jupiter Transiting a Bright F Star Followed Up with K2 Campaign 0 Observations
Huang, C. X., Hartman, J. D., Bakos, G. A., Penev, K., Bhatti, W., Bieryla, A., de Val-Borro, M., Latham, D. W., Buchhave, L. A., Csubry, Z., Kovacs, G., Beky, B., Falco, E., Berlind, P., Calkins, M. L., Esquerdo, G. A., Lazar, J., Papp, I. and Sari, P.. 2015. "HAT-P-56b: An Inflated Massive Hot Jupiter Transiting a Bright F Star Followed Up with K2 Campaign 0 Observations." The Astronomical Journal. 150 (3), pp. 1-11. https://doi.org/10.1088/0004-6256/150/3/85
HAT-P-44b, HAT-P-45b, and HAT-P-46b: Three Transiting Hot Jupiters in Possible Multi-planet Systems
Hartman, J. D., Bakos, G. A., Torres, G., Kovacs, G., Johnson, J. A., Howard, A. W., Marcy, G. W., Latham, D. W., Bieryla, A., Buchhave, L. A., Bhatti, W., Beky, B., Csubry, Z., Penev, K., de Val-Borro, M., Noyes, R. W., Fischer, D. A., Esquerdo, G. A., Everett, M., ..., Sari, P.. 2014. "HAT-P-44b, HAT-P-45b, and HAT-P-46b: Three Transiting Hot Jupiters in Possible Multi-planet Systems." The Astronomical Journal. 147 (6), pp. 1-18. https://doi.org/10.1088/0004-6256/147/6/128
HATSouth: A Global Network of Fully Automated Identical Wide-Field Telescopes
Bakos, G. A., Csubry, Z., Penev, K., Bayliss, D., Jordan, A., Afonso, C., Hartman, J. D., Henning, T., Kovacs, G., Noyes, R. W., Beky, B., Suc, V., Csak, B., Rabus, M., Lazar, J., Papp, I., Sari, P., Conroy, P., Zhou, G., ..., Ueltzhoeffer, K.. 2013. "HATSouth: A Global Network of Fully Automated Identical Wide-Field Telescopes." Publications of the Astronomical Society of the Pacific. 125 (924), pp. 154-182. https://doi.org/10.1086/669529