Global Spread, Genetic Differentiation, and Selection of Barley Spot Form Net Blotch Isolates

Article

Hassett, Kealan, Muria-Gonzalez, Mariano Jordi, Martin, Anke, Karakaya, Aziz, Oguz, Arzu Çelik, Bakonyi, Jószef, Knight, Noel L., Prins, Renée and Ellwood, Simon R.. 2024. "Global Spread, Genetic Differentiation, and Selection of Barley Spot Form Net Blotch Isolates." Phytopathology: International Journal of the American Phytopathological Society. 114 (7), pp. 1542-1553. https://doi.org/10.1094/PHYTO-11-23-0442-R
Article Title

Global Spread, Genetic Differentiation, and Selection of Barley Spot Form Net Blotch Isolates

ERA Journal ID2639
Article CategoryArticle
AuthorsHassett, Kealan, Muria-Gonzalez, Mariano Jordi, Martin, Anke, Karakaya, Aziz, Oguz, Arzu Çelik, Bakonyi, Jószef, Knight, Noel L., Prins, Renée and Ellwood, Simon R.
Journal TitlePhytopathology: International Journal of the American Phytopathological Society
Journal Citation114 (7), pp. 1542-1553
Number of Pages12
Year2024
PublisherAmerican Phytopathological Society
Place of PublicationUnited States
ISSN0031-949X
1943-7684
Digital Object Identifier (DOI)https://doi.org/10.1094/PHYTO-11-23-0442-R
Web Address (URL)https://apsjournals.apsnet.org/doi/10.1094/PHYTO-11-23-0442-R
AbstractSpot form net blotch, caused by Pyrenophora teres f. maculata, is a significant necrotrophic disease of barley that spread worldwide in the twentieth century. Genetic relationships were analyzed to determine the diversity, survival, and dispersal of a diverse collection of 346 isolates from Australia, Southern Africa, North America, Asia Minor, and Europe. The results, based on genome-wide DArTseq data, indicated that isolates from Turkey were the most differentiated with regional sub-structuring, together with individuals closely related to geographically distant genotypes. Elsewhere, population subdivision related to country of origin was evident, although low levels of admixturing was found that may represent rare genotypes or migration from unsampled populations. Canadian isolates were the next most diverged, and Australian and South African the most closely related. With the exception of Turkish isolates, multiple independent Cyp51A mutation events (which confer insensitivity to demethylation inhibitor fungicides) between countries and within regions was evident, with strong selection for a transposable element insertion at the 3’ end of the promoter and counterselection elsewhere. Individuals from Western Australia shared genomic regions and Cyp51A haplotypes with South African isolates, suggesting a recent common origin. Copyright © 2024 The Author(s).
Keywordsdiversity arrays technology; ungicide resistance; Hordeumvulgare; soft selective sweeps
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020300409. Crop and pasture protection (incl. pests, diseases and weeds)
Byline AffiliationsCurtin University
Centre for Crop Health
Ankara University, Turkiye
HUN-REN Centre for Agricultural Research, Hungary
CenGen, South Africa
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McLean, M. S., Martin, A., Gupta, S., Sutherland, M. W., Hollaway, G. J. and Platz, G. J.. 2014. "Validation of a new spot form of net blotch differential set and evidence for hybridisation between the spot and net forms of net blotch in Australia." Australasian Plant Pathology. 43 (3), pp. 223-233. https://doi.org/10.1007/s13313-014-0285-8
Infection of wheat tissues by Fusarium pseudograminearum
Knight, N. L., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2009. "Infection of wheat tissues by Fusarium pseudograminearum." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.
Crown rot of winter cereals: integrating molecular studies and germplasm improvement
Sutherland, Mark W., Bovill, W. D., Eberhard, F. S., Lehmensiek, A., Herde, D. and Simpfendorfer, S.. 2009. "Crown rot of winter cereals: integrating molecular studies and germplasm improvement." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.
Use of SSR markers to determine the genetic purity of a popular Australian wheat variety and consequences for stripe rust reactions
Simpfendorfer, S., Martin, A. and Sutherland, M. W.. 2013. "Use of SSR markers to determine the genetic purity of a popular Australian wheat variety and consequences for stripe rust reactions." Seed Science and Technology. 41 (1), pp. 98-106. https://doi.org/10.15258/sst.2013.41.1.09
Spread of Fusarium pseudograminearum in wheat seedling tissues from a single inoculation point
Knight, N. L. and Sutherland, M. W.. 2013. "Spread of Fusarium pseudograminearum in wheat seedling tissues from a single inoculation point." Australasian Plant Pathology. 42 (5), pp. 609-615. https://doi.org/10.1007/s13313-013-0225-z
QTLs for water absorption and flour yield identified in the doubled haploid wheat population Lang/QT8766
Fox, G. P., Martin, A., Kelly, A. M., Sutherland, M. W., Martin, D., Banks, P. M. and Sheppard, J.. 2013. "QTLs for water absorption and flour yield identified in the doubled haploid wheat population Lang/QT8766." Euphytica: international journal on plant breeding. 192 (3), pp. 453-462. https://doi.org/10.1007/s10681-013-0885-3
Introgression of hexaploid sources of crown rot resistance into durum wheat
Martin, A., Simpfendorfer, S., Hare, R. A. and Sutherland, M. W.. 2013. "Introgression of hexaploid sources of crown rot resistance into durum wheat." Euphytica: international journal on plant breeding. 192 (3), pp. 463-470. https://doi.org/10.1007/s10681-013-0890-6
Histopathological assessment of wheat seedling tissues infected by Fusarium pseudograminearum
Knight, N. L. and Sutherland, M. W.. 2013. "Histopathological assessment of wheat seedling tissues infected by Fusarium pseudograminearum ." Plant Pathology. 62 (3), pp. 679-687. https://doi.org/10.1111/j.1365-3059.2012.02663.x
Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification
Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W.. 2012. "Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification." Euphytica: international journal on plant breeding. 188 (3), pp. 325-332. https://doi.org/10.1007/s10681-012-0644-x
Assessment of infection by Fusarium Pseudograminearum in wheat seedling tissues using quantitative PCR and a visual discoloration scale
Knight, Noel L., Sutherland, Mark W., Martin, Anke and Herde, Damian J.. 2012. "Assessment of infection by Fusarium Pseudograminearum in wheat seedling tissues using quantitative PCR and a visual discoloration scale." Plant Disease: an international journal of applied plant pathology. 96 (11), pp. 1661-1669. https://doi.org/10.1094/PDIS-12-11-1050-RE
QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion
Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W.. 2012. "QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion." Euphytica: international journal on plant breeding. 185 (1), pp. 37-45. https://doi.org/10.1007/s10681-011-0608-6
Quantitative PCR and histopathological investigations of cereal tissues during infection by the crown rot pathogen Fusarium pseudograminearum
Knight, N. L., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2011. "Quantitative PCR and histopathological investigations of cereal tissues during infection by the crown rot pathogen Fusarium pseudograminearum." Tran-Nguyen, Lucy (ed.) 4th Asian Conference on Plant Pathology and the 18th Biennial Australasian Plant Pathology Society Conference (ACPP/APPS 2011): New Frontiers in Plant Pathology for Asia and Oceania. Darwin, Australia 26 - 29 Apr 2011 Toowoomba, Australia.
Retention of D genome chromosomes in pentaploid wheat crosses
Martin, A., Simpfendorfer, S., Hare, R. A., Eberhard, F. S. and Sutherland, M. W.. 2011. "Retention of D genome chromosomes in pentaploid wheat crosses." Heredity. 107 (4), pp. 315-319. https://doi.org/10.1038/hdy.2011.17
A rapid differential staining technique for Fusarium pseudograminearum in cereal tissues during crown rot infections
Knight, N. L. and Sutherland, M. W.. 2011. "A rapid differential staining technique for Fusarium pseudograminearum in cereal tissues during crown rot infections ." Plant Pathology. 60 (6), pp. 1140-1143. https://doi.org/10.1111/j.1365-3059.2011.02462.x
Chromosomal loci associated with endosperm hardness in a malting barley cross
Walker, Cassandra K., Panozzo, J. F., Ford, R., Eckermann, P., Moody, D., Lehmensiek, A. and Appels, R.. 2011. "Chromosomal loci associated with endosperm hardness in a malting barley cross." Theoretical and Applied Genetics: international journal of plant breeding research. 122 (1), pp. 151-162. https://doi.org/10.1007/s00122-010-1431-5
Markers for resistance to three foliar diseases in barley
Lehmensiek, A., Sutherland, M., Bovill, J. H., Platz, G. J., McNamara, R. B. and Mace, E.. 2010. "Markers for resistance to three foliar diseases in barley." Ceccarelli, Salvatore and Grando, Stefania (ed.) 10th International Barley Genetics Symposium (IBGS 2008). Alexandria, Egypt 05 - 10 Apr 2008
Quantitative PCR and histopathological assessment of cereal infection by fusarium pseudograminearum
Knight, Noel Liam. 2011. Quantitative PCR and histopathological assessment of cereal infection by fusarium pseudograminearum . PhD Thesis Doctor of Philosophy. University of Southern Queensland.
The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley
Lehmensiek, Anke, Sutherland, Mark W. and McNamara, Raymond B.. 2008. "The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley." Theoretical and Applied Genetics: international journal of plant breeding research. 117 (5), pp. 721-728. https://doi.org/10.1007/s00122-008-0813-4
Mapping of adult plant resistance to net form of net blotch in three Australian barley populations
Lehmensiek, A., Platz, G. J., Mace, E., Poulsen, D. and Sutherland, M. W.. 2007. "Mapping of adult plant resistance to net form of net blotch in three Australian barley populations." Australian Journal of Agricultural Research. 58 (12), pp. 1191-1197. https://doi.org/10.1071/AR07141
Simple sequence repeat markers associated with three quantitative trait loci for black point resistance can be used to enrich selection populations in bread wheat
Christopher, M. J., Williamson, P. M., Michalowitz, M., Jennings, R., Lehmensiek, A., Sheppard, J. and Banks, P.. 2007. "Simple sequence repeat markers associated with three quantitative trait loci for black point resistance can be used to enrich selection populations in bread wheat." Australian Journal of Agricultural Research. 58 (9), pp. 867-873. https://doi.org/10.1071/AR05435
Curation of wheat maps to improve map accuracy and QTL detection
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W. and Daggard, G. E.. 2005. "Curation of wheat maps to improve map accuracy and QTL detection." Australian Journal of Agricultural Research. 56 (12), pp. 1347-1354. https://doi.org/10.1071/AR05126
QTLs for black-point resistance in wheat and the identification of potential markers for use in breeding programmes
Lehmensiek, A., Campbell, A. W., Williamson, P. M., Michalowitz, M., Sutherland, M. W. and Daggard, G. E.. 2004. "QTLs for black-point resistance in wheat and the identification of potential markers for use in breeding programmes." Plant Breeding. 123 (5), pp. 410-416. https://doi.org/10.1111/j.1439-0523.2004.01013.x
Resistance gene analogues of wheat: molecular genetic analysis of ESTs
McFadden, H. G., Lehmensiek, A. and Lagudah, E. S.. 2006. "Resistance gene analogues of wheat: molecular genetic analysis of ESTs." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (6), pp. 987-1002. https://doi.org/10.1007/s00122-006-0358-3
Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome
Akbari, Mona, Wenzl, Peter, Caig, Vanessa, Carling, Jason, Xia, Ling, Yang, Shiying, Uszynski, Grzegorz, Mohler, Volker, Lehmensiek, Anke, Kuchel, Haydn, Hayden, Mathew J., Howes, Neil, Sharp, Peter, Vaughan, Peter, Rathmell, Bill, Huttner, Eric and Kilian, Andrzej. 2006. "Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (8), pp. 1409-1420. https://doi.org/10.1007/s00122-006-0365-4
Flour yield QTLs in three Australian doubled haploid wheat populations
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W., Martin, D. and Daggard, G. E.. 2006. "Flour yield QTLs in three Australian doubled haploid wheat populations." Australian Journal of Agricultural Research. 57 (10), pp. 1115-1122. https://doi.org/10.1071/AR05375
Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population
Collard, B. C. Y., Grams, R. A., Bovill, W. D., Percy, C. D., Jolley, R., Lehmensiek, A., Wildermuth, G. B. and Sutherland, M. W.. 2005. "Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population." Plant Breeding. 124 (6), pp. 532-537. https://doi.org/10.1111/j.1439-0523.2005.01163.x
Molecular characterization of a Triticum timopheevii introgression in a Wentworth/Lang population
Lehmensiek, A., Bovill, W. D., Banks, P. M. and Sutherland, M. W.. 2008. "Molecular characterization of a Triticum timopheevii introgression in a Wentworth/Lang population." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Progress in comparing fusarium pseudograminearum infection levels and crown rot symptoms in stem internodes of cereals
Petrisko, J. E., Knight, N. and Sutherland, M. W.. 2010. "Progress in comparing fusarium pseudograminearum infection levels and crown rot symptoms in stem internodes of cereals." Stirling, Graham R. (ed.) 6th Australasian Soilborne Diseases Symposium. Twin Waters, Australia 09 - 11 Aug 2010 Australia.
Infection of wheat tissues by fusarium pseudograminearum
Knight, N. L., Percy, C., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2008. "Infection of wheat tissues by fusarium pseudograminearum." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Validation of black point QTL in wheat
Tah, P. R., Lehmensiek, A., Williamson, P. M., Michalowitz, M., Done, A. and Daggard, G. E.. 2008. "Validation of black point QTL in wheat." Appels, Rudi, Eastwood, Russell, Lagudah, Peter, Mackay, Michael, McIntyre, Lynne and Sharp, Peter J. (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Identification of genetic regions associated with black point in barley
Tah, Priya R., Lehmensiek, A., Fox, Glen P., Mace, Emma, Sulman, Maria, Bloustein, Gary and Daggard, Grant E.. 2010. "Identification of genetic regions associated with black point in barley." Field Crops Research. 115 (1), pp. 61-66. https://doi.org/10.1016/j.fcr.2009.10.003
Molecular mapping of adult plant stripe rust resistance in wheat and identification of pyramided QTL genotypes
Bariana, H. S., Bansal, U. K., Schmidt, A., Lehmensiek, A., Kaur, J., Miah, H., Howes, N. and McIntyre, C. L.. 2010. "Molecular mapping of adult plant stripe rust resistance in wheat and identification of pyramided QTL genotypes." Euphytica: international journal on plant breeding. 176 (2), pp. 251-260. https://doi.org/10.1007/s10681-010-0240-x
Mapping spot blotch resistance genes in four barley populations
Bovill, Jessica, Lehmensiek, Anke, Sutherland, Mark W., Platz, Greg. J., Usher, Terry, Franckowiak, Jerome and Mace, Emma. 2010. "Mapping spot blotch resistance genes in four barley populations." Molecular Breeding: new strategies in plant improvement. 26 (4), pp. 653-666. https://doi.org/10.1007/s11032-010-9401-9
Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH
Eberhard, Friederike S., Zhang, Peng, Lehmensiek, Anke, Hare, Ray A., Simpfendorfer, Steven and Sutherland, Mark W.. 2010. "Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH." Crop and Pasture Science. 61 (8), pp. 619-624. https://doi.org/10.1071/CP10131
An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley
Knight, N. L., Platz, G. J., Lehmensiek, A. and Sutherland, M. W.. 2010. "An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley." Australasian Plant Pathology. 39 (3), pp. 207-216. https://doi.org/10.1071/AP09082
Genomic regions associated with common root rot resistance in the barley variety Delta
Lehmensiek, A., Bovill, J., Sutherland, M. W. and McNamara, R. B.. 2010. "Genomic regions associated with common root rot resistance in the barley variety Delta." Australasian Plant Pathology. 39 (3), pp. 241-246. https://doi.org/10.1071/AP09089
Population structure of South African and Australian Pyrenophora teres isolates
Lehmensiek, A., Bester-van der Merwe, A. E., Sutherland, M. W., Platz, G., Kriel, W. M., Potgieter, G. F. and Prins, R.. 2010. "Population structure of South African and Australian Pyrenophora teres isolates." Plant Pathology. 59 (3), pp. 504-515. https://doi.org/10.1111/j.1365-3059.2009.02231.x
Genetic mapping in the Triticeae
Lehmensiek, Anke, Bovill, William, Wenzl, Peter, Langridge, Peter and Appels, Rudi. 2009. "Genetic mapping in the Triticeae." Feuillet, Catherine and Muehlbauer, Gary (ed.) Genetics and genomics of the Triticeae. New York, NY. United States. Springer. pp. 201-235
QTL mapping of stripe, leaf and stem rust resistance genes in a Kariega x Avocet S doubled haploid wheat population
Prins, R., Pretorius, Z. A., Bender, C. M. and Lehmensiek, A.. 2011. "QTL mapping of stripe, leaf and stem rust resistance genes in a Kariega x Avocet S doubled haploid wheat population." Molecular Breeding: new strategies in plant improvement. 27 (2), pp. 259-270. https://doi.org/10.1007/s11032-010-9428-y
Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley
Sutherland, M. W., Lehmensiek, A., Leist, C., Platz, G. and Usher, T. R.. 2009. "Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Indooroopilly, Australia.
Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH
Eberhard, F. S., Zhang, P., Lehmensiek, A., Sutherland, M. W., Hare, R. and Simpfendorfer, S.. 2008. "Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH." Appels, Rudi, Eastwood, Russell, Lagudah, Evans, Mackay, Michael, McIntyre, Lynne, Sharp, Peter and Langridge, Peter (ed.) 11th International Wheat Genetics Sympoium (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats
Sutherland, Mark, Bovill, W. D., Horne, M., Lehmensiek, A., Eberhard, F., Percy, C., Wildermuth, G. B., Simpfendorfer, S. and Hare, R.. 2008. "The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats." 10th International Fusarium and Fusarium Genomics Workshop 2008. Sardinia, Italy 30 Aug - 02 Sep 2008 Sardinia,Italy.
Mapping markers for priority traits in the northern grains region of Australia
Mace, E., Sutherland, Mark, Lehmensiek, Anke, Bovill, Bill, Bovill, Jessica, Collard, Bert, Daggard, Grant and Christopher, M. J.. 2006. "Mapping markers for priority traits in the northern grains region of Australia." ITMI Workshop and ACPFG Genomics Symposium (2006). Victor Harbour, Australia 27 - 31 Aug 2006
Strategies for fine mapping QTLs for crown rot resistance in wheats
Bovill, W. D., Collard, B. C. Y., Lehmensiek, Anke, Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Strategies for fine mapping QTLs for crown rot resistance in wheats." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong.
Molecular mapping of durable rust resistance in wheat and its implication in breeding
Bariana, H. S., Miah, H., Brown, G. N., Willey, N. and Lehmensiek, A.. 2007. "Molecular mapping of durable rust resistance in wheat and its implication in breeding." 7th International Wheat Conference (IWC 2005). Argentina 27 Nov - 02 Dec 2005 https://doi.org/10.1007/1-4020-5497-1_88
Genetic mapping of gray leaf spot (GLS) resistance genes in maize
Lehmensiek, A., Esterhuizen, A. M., Van Staden, D., Nelson, S. W. and Retief, A. E.. 2001. "Genetic mapping of gray leaf spot (GLS) resistance genes in maize ." Theoretical and Applied Genetics: international journal of plant breeding research. 103 (5), pp. 797-803. https://doi.org/10.1007/s001220100599