Centre for Crop Health
Latest research outputs
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Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?
Del Ponte, Emerson M., Sparks, Adam H., Cunniffe, Nik J. and Madden, Laurence V.. 2018. "Can rainfall be a useful predictor of epidemic risk across temporal and spatial scales?" 11th International Congress of Plant Pathology (ICPP 2018): Plant Health in a Global Economy. Boston, United States 29 Jul - 03 Aug 2018 United States.Keynote
Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli
Roach, R., Mann, R., Gambley, C. G., Chapman, T., Shivas, R. G. and Rodoni, B.. 2019. "Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli." BMC Genomics. 20 (1 - 310), pp. 1-22. https://doi.org/10.1186/s12864-019-5600-xArticle
Novel sources of resistance to root-lesion nematode (Pratylenchus thornei) in a new collection of wild Cicer species (C. reticulatum and C. echinospermum) to improve resistance in cultivated chickpea (C. arietinum)
Reen, Roslyn A., Mumford, Michael H. and Thompson, John P.. 2019. "Novel sources of resistance to root-lesion nematode (Pratylenchus thornei) in a new collection of wild Cicer species (C. reticulatum and C. echinospermum) to improve resistance in cultivated chickpea (C. arietinum)." Phytopathology: International Journal of the American Phytopathological Society. 109, pp. 1270-1279. https://doi.org/10.1094/PHYTO-02-19-0047-RArticle
A dual rescaled Mitscherlich model of the simultaneous savings in phosphorus and zinc fertiliser from arbuscular mycorrhizal fungal colonisation of linseed (Linum usitatissimum L.)
Seymour, Nicole P., Edwards, David G. and Thompson, John P.. 2019. "A dual rescaled Mitscherlich model of the simultaneous savings in phosphorus and zinc fertiliser from arbuscular mycorrhizal fungal colonisation of linseed (Linum usitatissimum L.)." Plant and Soil: international journal on plant-soil relationships. 440 (1-2), pp. 97-118. https://doi.org/10.1007/s11104-019-04065-2Article
Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period
Page, Kathryn L., Dang, Yash P., Dalal, Ram C., Reeves, Steven, Thomas, Greg, Wang, Weijin and Thompson, John P.. 2019. "Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period." Soil and Tillage Research. 194, pp. 1-8. https://doi.org/10.1016/j.still.2019.104319Article
Mitigation of arsenic accumulation in rice: an agronomical, physico-chemical, and biological approach – a critical review
Kumarathilaka, Prasanna, Seneweera, Saman, Ok, Yong Sik, Meharg, Andrew A. and Bundschuh, Jochen. 2020. "Mitigation of arsenic accumulation in rice: an agronomical, physico-chemical, and biological approach – a critical review." Critical Reviews in Environmental Science and Technology. 50 (1), pp. 31-71. https://doi.org/10.1080/10643389.2019.1618691Article
Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by Normalised Difference Vegetation Index (NDVI) is predictive of grain yield
Robinson, Neil A., Sheedy, Jason G., Macdonald, Bethany J., Owen, Kirsty J. and Thompson, John P.. 2019. "Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by Normalised Difference Vegetation Index (NDVI) is predictive of grain yield." Annals of Applied Biology. 174 (3), pp. 388-401. https://doi.org/10.1111/aab.12504Article
A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys
Adorada, D. L., Gonzales, P., McKay, A., Vaghefi, N. and Sparks, A. H.. 2018. "A broad look at charcoal rot in the Northern Region broadacre crops through soil sampling and in-crop surveys." 10th Australasian Soilborne Diseases Symposium. Adelaide, Australia 04 - 08 Sep 2018 Australia.Presentation
Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York
Knight, Noel L., Vaghefi, Niloofar, Hansen, Zachariah R., Kikkert, Julie R. and Pethybridge, Sarah J.. 2017. "Temporal shifts in genetic structure and differentiation of Cercospora beticola populations in table beet fields of New York." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.Presentation
Development of microsatellite markers for quantifying genetic diversity of Pleospora betae
Koenick, Lori, Vaghefi, Niloofar, Knight, Noel L., du Toit, Lindsey and Pethybridge, Sarah J.. 2017. "Development of microsatellite markers for quantifying genetic diversity of Pleospora betae." 2017 Annual Meeting of the Northeastern Division of the American Phytopathological Society. Quebec City, Canada 01 - 03 Nov 2017 St Paul, United States. American Phytopathological Society.Presentation
Arsenic in cooked rice foods: assessing health risks and mitigation options
Kumarathilaka, Prasanna, Seneweera, Saman, Ok, Yong Sik, Meharg, Andrew and Bundschuh, Jochen. 2019. "Arsenic in cooked rice foods: assessing health risks and mitigation options." Environment International. 127, pp. 584-591. https://doi.org/10.1016/j.envint.2019.04.004Article
Molecular mechanisms of growth responses to elevated atmospheric carbon dioxide in wheat (Triticum aestivum L.)
Gamage, Dananjali Mekhala. 2018. Molecular mechanisms of growth responses to elevated atmospheric carbon dioxide in wheat (Triticum aestivum L.). PhD Thesis Doctor of Philosophy. University of southern Queensland. https://doi.org/10.26192/5f69868cdccdfPhD Thesis
Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present
Dotaona, Ronnie, Wilson, Bree A. L., Ash, Gavin J., Holloway, Joanne and Stevens, Mark M.. 2017. "Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present." Journal of Invertebrate Pathology. 148, pp. 67-72. https://doi.org/10.1016/j.jip.2017.05.010Article
Effects of elevated carbon dioxide on photosynthesis and carbon partitioning: a perspective on root sugar sensing and hormonal crosstalk
Thompson, Michael, Gamage, Dananjali, Hirotsu, Naoki, Martin, Anke and Seneweera, Saman. 2017. "Effects of elevated carbon dioxide on photosynthesis and carbon partitioning: a perspective on root sugar sensing and hormonal crosstalk." Frontiers in Physiology. 8, pp. 1-13. https://doi.org/10.3389/fphys.2017.00578Article
Ray blight of pyrethrum in Australia: a review of the current status and future opportunities
Bhuiyan, M. A. H. B., Vaghefi, N. and Taylor, P. W. J.. 2019. "Ray blight of pyrethrum in Australia: a review of the current status and future opportunities." Plant Pathology. 68 (4), pp. 620-627. https://doi.org/10.1111/ppa.13000Article
New insights into the cellular mechanisms of plant growth at elevated atmospheric carbon dioxide concentrations
Gamage, Dananjali, Thompson, Michael, Sutherland, Mark, Hirotsu, Naoki, Makino, Amane and Seneweera, Saman. 2018. "New insights into the cellular mechanisms of plant growth at elevated atmospheric carbon dioxide concentrations." Plant, Cell and Environment. 41 (6), pp. 1233-1246. https://doi.org/10.1111/pce.13206Article
ThetaProbe
Sparks, Adam H.. 2018. ThetaProbe. Adam Sparks. https://doi.org/10.5281/zenodo.1043615Software
Survival of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol is influenced by rate of progressive soil desiccation
Thompson, J. P., Rostad, H. E. and Whish, J. P. M.. 2017. "Survival of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol is influenced by rate of progressive soil desiccation." Annals of Applied Biology. 170 (1), pp. 78-88. https://doi.org/10.1111/aab.12316Article
Concepts, approaches, and avenues for modelling crop health and crop losses
Savary, Serge, Nelson, Andrew D., Djurle, Annika, Esker, Paul D., Sparks, Adam H., Amorim, Lilian, Filho, Armamando Bergamin, Caffi, Tito, Castilla, Nancy, Garrett, Karen, McRoberts, Neil, Rossi, Vitorrio, Yuen, Jonathan and Willocquet, Laetitia. 2018. "Concepts, approaches, and avenues for modelling crop health and crop losses." European Journal of Agronomy. 100, pp. 4-18. https://doi.org/10.1016/j.eja.2018.04.003Article
The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae
Riess, Kai, Schon, Max E., Ziegler, Rebekka, Lutz, Matthias, Shivas, Roger G., Piatek, Marcin and Garnica, Sigisfredo. 2019. "The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae." Organisms Diversity and Evolution. 19 (1), pp. 13-30. https://doi.org/10.1007/s13127-018-0384-4Article
An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres
El-Mor, Iman, Fowler, Ryan, Platz, Greg, Sutherland, Mark and Martin, Anke. 2018. "An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres." Plant Disease: an international journal of applied plant pathology. 102 (4), pp. 760-763. https://doi.org/10.1094/PDIS-07-17-0980-REArticle
Arsenic accumulation in rice (Oryza sativa L.) is influenced by environment and genetic factors
Kumarathilaka, Prasanna, Seneweera, Saman, Meharg, Andrew and Bundschuh, Jochen. 2018. "Arsenic accumulation in rice (Oryza sativa L.) is influenced by environment and genetic factors." Science of the Total Environment. 642, pp. 485-496. https://doi.org/10.1016/j.scitotenv.2018.06.030Article
Linear modelling of soil temperature effects on root lesion nematode population densities in R [Blog post]
Sparks, Adam H. and Thompson, John P.. 2018. "Linear modelling of soil temperature effects on root lesion nematode population densities in R [Blog post]." Open Plant Pathology Notes. February 2018, pp. 1-24. https://doi.org/10.5281/zenodo.1173391Letter
The first smut fungus, Thecaphora anthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae)
Kruse, Julia, Kummer, Volker, Shivas, Roger G. and Thines, Marco. 2018. "The first smut fungus, Thecaphora anthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae)." MycoKeys. 41, pp. 39-50. https://doi.org/10.3897/mycokeys.41.28454Article
Identification and mapping of net form of net blotch resistance in South African barley
Martin, Anke, Platz, Gregory J., de Klerk, Daniel, Fowler, Ryan A., Smit, Francois, Potgieter, Francois G. and Prins, Renee. 2018. "Identification and mapping of net form of net blotch resistance in South African barley." Molecular Breeding: new strategies in plant improvement. 38 (5), pp. 1-10. https://doi.org/10.1007/s11032-018-0814-1Article
Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions
Syme, Robert A., Martin, Anke, Wyatt, Nathan A., Lawrence, Julie A., Muria-Gonzalez, Mariano J., Friesen, Timothy L. and Ellwood, Simon R.. 2018. "Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions." Frontiers in Genetics. 9, pp. 1-15. https://doi.org/10.3389/fgene.2018.00130Article
First report of powdery mildew on goji berry (Lycium barbarum) caused by arthrocladiella mougeotii in Queensland, Australia
Kiss, L., Stuart, K., Grigg, J., Calvert, J. and Dearnaley, J. D. W.. 2018. "First report of powdery mildew on goji berry (Lycium barbarum) caused by arthrocladiella mougeotii in Queensland, Australia." Plant Disease: an international journal of applied plant pathology. 102 (2), p. 446. https://doi.org/10.1094/PDIS-07-17-1055-PDNArticle
Arsenic speciation dynamics in paddy rice soil-water environment: sources, physico-chemical, and biological factors - a review
Kumarathilaka, Prasanna, Seneweera, Saman, Meharg, Andrew and Bundschuh, Jochen. 2018. "Arsenic speciation dynamics in paddy rice soil-water environment: sources, physico-chemical, and biological factors - a review." Water Research. 140, pp. 403-414. https://doi.org/10.1016/j.watres.2018.04.034Article
Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]
Adorada, Dante, Kelly, Lisa, Vaghefi, Niloofar and Sparks, Adam H,. 2018. "Summer paddock survey finds fungal and bacterial diseases decreased but not eliminated [GRDC Field Crop Diseases Community of Practice, 1 October 2018 - Online community]." GRDC Field Crop Diseases Community of Practice. 1 October 2018, pp. 1-8.Letter
DAQ00186 2017 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease
Sparks, Adam H., Adorada, Dante L., Adorada, Encar, Gonzales, Precila, Kelly, Lisa, Sharman, Murray and Grams, Raechelle. 2017. DAQ00186 2017 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease. Australia. Grains Research and Development Corporation.Project report
DAQ00186 2016 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease
Sparks, Adam H., Adorada, Dante, Kelly, Lisa, Sharman, Murray, Thompson, Sue, Wenham, Kylie, White, Jodie and Grams, Raechelle. 2017. DAQ00186 2016 progress report: improving grower surveillance, management, epidemiology, knowledge and tools to manage crop disease. Australia. Grains Research and Development Corporation.Project report
nasapower: a NASA POWER global meteorology, surface solar energy and climatology data client for R [Journal of Open Source Software, vol. 3, no. 30, 1035
Sparks, Adam H.. 2018. nasapower: a NASA POWER global meteorology, surface solar energy and climatology data client for R [Journal of Open Source Software, vol. 3, no. 30, 1035. Baltimore, Maryland, United States. NumFOCUS. https://doi.org/10.21105/joss.01035Software
Diagnosing plant diseases: what do we ask and why do we ask for it? [Online community]
Adorada, Dante L., Sigel, Louise, Kelly, Lisa and Sparks, Adam. 2017. "Diagnosing plant diseases: what do we ask and why do we ask for it? [Online community]." GRDC Communities.Article
Mungbean powdery mildew management with fungicide [Online community]
Sparks, Adam and Kelly, Lisa. 2017. "Mungbean powdery mildew management with fungicide [Online community]." GRDC Communities. 15 December 2017.Article
Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W. and Martin, Anke. 2018. "Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses." Molecular Breeding: new strategies in plant improvement. 38 (7), pp. 1-8. https://doi.org/10.1007/s11032-018-0838-6Article
A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W., Knight, Noel L. and Martin, Anke. 2018. "A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses." Crop and Pasture Science. 69 (2), pp. 121-130. https://doi.org/10.1071/CP17240Article
From leaf to continent: the multi-scale distribution of an invasive cryptic pathogen complex on oak
Desprez-Loustau, Marie-Laure, Massot, Marie, Toigo, Maude, Fort, Tania, Aday Kaya, Ayse Gulden, Boberg, Johanna, Braun, Uwe, Capdevielle, Xavier, Cech, Thomas, Chandelier, Anne, Christova, Petya, Corcobado, Tamara, Dogmus, Tugba, Dutech, Cyril, Fabreguettes, Olivier, Faivre d'Arcier, Julie, Gross, Andrin, Horta Jung, Marilia, Iturritxa, Eugenia, ..., Tack, Ayco J.M.. 2018. "From leaf to continent: the multi-scale distribution of an invasive cryptic pathogen complex on oak." Fungal Ecology. 36, pp. 39-50. https://doi.org/10.1016/j.funeco.2018.08.001Article
Fungal planet description sheets: 716-784
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Gene, J., Guarro, J., Baseia, I. G., Garcia, D., Gusmao, L. F. P., Souza-Motta, C. M., Thangavel, R., Adamcik, S., Barili, A., Barnes, C. W., Bezerra, J. D. P., Bordallo, J. J., Cano-Lira, J. F., de Oliveira, R. J. V., Ercole, E., ..., Groenewald, J. Z.. 2018. "Fungal planet description sheets: 716-784." Persoonia. 40, pp. 240-393. https://doi.org/10.3767/persoonia.2018.40.10Article
Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia
Kiss, Levente, Kovacs, Gabor M., Boka, Karoly, Bohar, Gyula, Boharne, Krisztina Varga, Nemeth, Mark Z., Takamatsu, Susumu, Shin, Hyeon-Dong, Hayova, Vera, Nischwitz, Claudia, Seier, Marion K., Evans, Harry C., Cannon, Paul F., Ash, Gavin James, Shivas, Roger G. and Muller-Scharer, Heinz. 2018. "Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia." Scientific Reports. 8, pp. 1-14. https://doi.org/10.1038/s41598-018-29102-5Article
Genetic analysis of crosses between hexaploid bread (Triticum aestivum L.) and tetraploid durum wheat (T. turgidum spp durum)
Padmanaban, Sriram. 2018. Genetic analysis of crosses between hexaploid bread (Triticum aestivum L.) and tetraploid durum wheat (T. turgidum spp durum). PhD Thesis Doctor of Philosophy. University of Southern Queensland. https://doi.org/10.26192/5c0dab7af69d1PhD Thesis
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