Molecular detection of diverse Leifsonia strains associated with sugarcane

Article

Young, Anthony J. and Nock, Catherine J.. 2017. "Molecular detection of diverse Leifsonia strains associated with sugarcane." Plant Disease: an international journal of applied plant pathology. 101 (8), pp. 1422-1431. https://doi.org/10.1094/PDIS-01-17-0016-RE
Article Title

Molecular detection of diverse Leifsonia strains associated with sugarcane

ERA Journal ID2647
Article CategoryArticle
AuthorsYoung, Anthony J. (Author) and Nock, Catherine J. (Author)
Journal TitlePlant Disease: an international journal of applied plant pathology
Journal Citation101 (8), pp. 1422-1431
Number of Pages10
Year2017
PublisherAmerican Phytopathological Society
Place of PublicationUnited States
ISSN0191-2917
1943-7692
Digital Object Identifier (DOI)https://doi.org/10.1094/PDIS-01-17-0016-RE
Abstract

Leifsonia xyli subsp. xyli, causal agent of ratoon stunting disease (RSD) of sugarcane (Saccharum interspecific hybrids), is the most well-known member of the microbacteriaceal genus Leifsonia. However, the presence of other Leifsonia strains associated with sugarcane has not been reported. A total of 697 Australian and 40 Indonesian sugarcane fields were screened by leaf sheath biopsy (LSB) PCR using primers specific for L. xyli subsp. xyli, in addition to primers designed to amplify DNA from other members of the genus Leifsonia. While L. xyli subsp. xyli was detected in 126 fields, a total of 37 distinct and novel Leifsonia and related strains were detected in 117 fields. Representatives of these strains were also detected in multiple samples of expressed xylem. Sequencing and phylogenetic analyses demonstrated the presence of a broad complex of novel Leifsonia strains, in addition to strains closely related to the recently erected Cnuibacter genus. Attempts to isolate Leifsonia strains were unsuccessful, however, one strain related to Cnuibacter was recovered from expressed xylem sap. Among the genetically diverse lineages discovered, identical genotypes were present in multiple sugarcane varieties growing in disparate regions in different years, strongly suggesting an ongoing association with sugarcane. The epidemiological significance of these strains is unknown, but there is evidence that they can interfere with serological and microscopic RSD diagnostics, and there is the potential that they may represent new and distinct pathologies of sugarcane.

Keywordssugarcane; ratoon stunting disease (RSD); Leifsonia
ANZSRC Field of Research 2020300409. Crop and pasture protection (incl. pests, diseases and weeds)
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Byline AffiliationsCentre for Crop Health
Southern Cross University
Institution of OriginUniversity of Southern Queensland
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