Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'

Article

Collard, B. C. Y., Jolley, R., Bovill, W. D., Grams, R. A., Wildermuth, G. B. and Sutherland, M. W.. 2006. "Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'." Australian Journal of Agricultural Research. 57 (9), pp. 967-973. https://doi.org/10.1071/AR05419
Article Title

Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'

ERA Journal ID5177
Article CategoryArticle
AuthorsCollard, B. C. Y. (Author), Jolley, R. (Author), Bovill, W. D. (Author), Grams, R. A. (Author), Wildermuth, G. B. (Author) and Sutherland, M. W. (Author)
Journal TitleAustralian Journal of Agricultural Research
Journal Citation57 (9), pp. 967-973
Number of Pages7
Year2006
PublisherCSIRO Publishing
Place of PublicationAustralia
ISSN0004-9409
1444-9838
Digital Object Identifier (DOI)https://doi.org/10.1071/AR05419
Web Address (URL)https://www.publish.csiro.au/cp/AR05419
Abstract

We have tested the efficacy of putative microsatellite single sequence repeat (SSR) markers, previously identified in a 2-49 (Gluyas Early/Gala) x Janz doubled haploid wheat (Triticum aestivum) population, as being linked to partial seedling resistance to crown rot disease caused by Fusarium pseudograminearum. The quantitative trait loci (QTLs) delineated by these markers have been tested for linkage to resistance in an independent Gluyas Early x Janz doubled haploid population. The presence of a major QTL on chromosome 1DL (QCr.usq-1D1) and a minor QTL on chromosome 2BS (QCr.usq-2B1) was confirmed. However, a putative minor QTL on chromosome 2A was not confirmed. The QTL on 1D was inherited from Gluyas Early, a direct parent of 2-49, whereas the 2B QTL was inherited from Janz. Three other putative QTLs identified in 2-49 x Janz (on 1AL, 4BL, and 7BS) were inherited by 2-49 from Gala and were not able to be confirmed in this study. The screening of SSR markers on a small sample of elite wheat genotypes indicated that not all of the most tightly linked SSR markers flanking the major QTLs on 1D and 1A were polymorphic in all backgrounds, indicating the need for additional flanking markers when backcrossing into some elite pedigrees. Comparison of SSR haplotypes with those of other genotypes exhibiting partial crown rot resistance suggests that additional, novel sources of crown rot resistance are available.

Keywordstargetted mapping; QTL resolution; 1-LOD support interval; allelic homoplasy
ANZSRC Field of Research 2020310506. Gene mapping
300406. Crop and pasture improvement (incl. selection and breeding)
300409. Crop and pasture protection (incl. pests, diseases and weeds)
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Byline AffiliationsCentre for Systems Biology
Department of Primary Industries, Queensland
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Knight, N. L., Percy, C., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2008. "Infection of wheat tissues by fusarium pseudograminearum." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance
Nicol, J. M., Sahin, E., Wallwork, H., Chakraborty, S., Lu, M., O'Brien, L., Sutherland, M., Horne, M., Simpfendorfer, S., Herde, D., Ogbonnaya, F., Duvellier, E., Bolat, N., Yahyaoui, A., Buerstmayr, H., Lewis, J., Crossa, J., Singh, A. K., Bishnoi, S. P., ..., Gargouri, S.. 2008. "Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Mapping spot blotch resistance genes in four barley populations
Bovill, Jessica, Lehmensiek, Anke, Sutherland, Mark W., Platz, Greg. J., Usher, Terry, Franckowiak, Jerome and Mace, Emma. 2010. "Mapping spot blotch resistance genes in four barley populations." Molecular Breeding: new strategies in plant improvement. 26 (4), pp. 653-666. https://doi.org/10.1007/s11032-010-9401-9
Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH
Eberhard, Friederike S., Zhang, Peng, Lehmensiek, Anke, Hare, Ray A., Simpfendorfer, Steven and Sutherland, Mark W.. 2010. "Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH." Crop and Pasture Science. 61 (8), pp. 619-624. https://doi.org/10.1071/CP10131
An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley
Knight, N. L., Platz, G. J., Lehmensiek, A. and Sutherland, M. W.. 2010. "An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley." Australasian Plant Pathology. 39 (3), pp. 207-216. https://doi.org/10.1071/AP09082
Genomic regions associated with common root rot resistance in the barley variety Delta
Lehmensiek, A., Bovill, J., Sutherland, M. W. and McNamara, R. B.. 2010. "Genomic regions associated with common root rot resistance in the barley variety Delta." Australasian Plant Pathology. 39 (3), pp. 241-246. https://doi.org/10.1071/AP09089
Population structure of South African and Australian Pyrenophora teres isolates
Lehmensiek, A., Bester-van der Merwe, A. E., Sutherland, M. W., Platz, G., Kriel, W. M., Potgieter, G. F. and Prins, R.. 2010. "Population structure of South African and Australian Pyrenophora teres isolates." Plant Pathology. 59 (3), pp. 504-515. https://doi.org/10.1111/j.1365-3059.2009.02231.x
Pyramiding QTL increases seedling resistance to crown rot (Fusarium pseudograminearum) of wheat (Triticum aestivum)
Bovill, W. D., Horne, M., Herde, D., Davis, M., Wildermuth, G. B. and Sutherland, M. W.. 2010. "Pyramiding QTL increases seedling resistance to crown rot (Fusarium pseudograminearum) of wheat (Triticum aestivum)." Theoretical and Applied Genetics: international journal of plant breeding research. 121 (1), pp. 127-136. https://doi.org/10.1007/s00122-010-1296-7
Genetic mapping in the Triticeae
Lehmensiek, Anke, Bovill, William, Wenzl, Peter, Langridge, Peter and Appels, Rudi. 2009. "Genetic mapping in the Triticeae." Feuillet, Catherine and Muehlbauer, Gary (ed.) Genetics and genomics of the Triticeae. New York, NY. United States. Springer. pp. 201-235
The generation of oxygen radicals during host plant responses to infection
Sutherland, Mark W.. 1991. "The generation of oxygen radicals during host plant responses to infection." Physiological and Molecular Plant Pathology. 39 (1), pp. 71-93.
Genes involved in hypersensitive cell death responses during fusarium crown rot infection in wheat
Petrisko, Jill E., Sutherland, Mark W. and Windes, Juliet M.. 2009. "Genes involved in hypersensitive cell death responses during fusarium crown rot infection in wheat." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.
Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley
Sutherland, M. W., Lehmensiek, A., Leist, C., Platz, G. and Usher, T. R.. 2009. "Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Indooroopilly, Australia.
Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH
Eberhard, F. S., Zhang, P., Lehmensiek, A., Sutherland, M. W., Hare, R. and Simpfendorfer, S.. 2008. "Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH." Appels, Rudi, Eastwood, Russell, Lagudah, Evans, Mackay, Michael, McIntyre, Lynne, Sharp, Peter and Langridge, Peter (ed.) 11th International Wheat Genetics Sympoium (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats
Sutherland, Mark, Bovill, W. D., Horne, M., Lehmensiek, A., Eberhard, F., Percy, C., Wildermuth, G. B., Simpfendorfer, S. and Hare, R.. 2008. "The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats." 10th International Fusarium and Fusarium Genomics Workshop 2008. Sardinia, Italy 30 Aug - 02 Sep 2008 Sardinia,Italy.
Segregation of glutenins in wheatxmaize-derived doubled haploid wheat populations
Kammholz, Stephen J., Grams, Raechelle A., Banks, Phillip and Sutherland, Mark W.. 1998. "Segregation of glutenins in wheatxmaize-derived doubled haploid wheat populations." Australian Journal of Agricultural Research. 49 (8), pp. 1253-1259. https://doi.org/10.1071/A98032
Use of a new tetrazolium-based assay to study the production of superoxide radicals by tobacco cell cultures challenged with avirulent zoospores of Phytopthora parasitica var nicotianae
Able, Amanda J., Guest, David I. and Sutherland, Mark W.. 1998. "Use of a new tetrazolium-based assay to study the production of superoxide radicals by tobacco cell cultures challenged with avirulent zoospores of Phytopthora parasitica var nicotianae." Plant Physiology. 117 (2), pp. 491-499.
The tetrazolium dyes MTS and XTT provide new quantitative assays for superoxide and superoxide dismutase
Sutherland, Mark W. and Learmonth, Barbara A.. 1997. "The tetrazolium dyes MTS and XTT provide new quantitative assays for superoxide and superoxide dismutase." Free Radical Research. 27 (3), pp. 283-289. https://doi.org/10.3109/10715769709065766
Improving the efficiency of haploid wheat production mediated by wide crossing
Kammholz, Stephen J., Sutherland, Mark W. and Banks, Phillip. 1996. "Improving the efficiency of haploid wheat production mediated by wide crossing." Sabrao Journal. 28, pp. 37-46.
Hydrogen peroxide yields during the incompatible interaction of tobacco suspension cells inoculated with Phytophthora nicotiannae
Able, Amanda J., Guest, David I. and Sutherland, Mark W.. 2000. "Hydrogen peroxide yields during the incompatible interaction of tobacco suspension cells inoculated with Phytophthora nicotiannae." Plant Physiology. 124 (2), pp. 899-910.
Relationship between transembrane ion movements, production of reactive oxygen species and the hypersensitive response during the challenge of tobacco suspension cells by zoospores of Phytophthora nicotianae
Able, Amanda J., Guest, David I. and Sutherland, Mark W.. 2001. "Relationship between transembrane ion movements, production of reactive oxygen species and the hypersensitive response during the challenge of tobacco suspension cells by zoospores of Phytophthora nicotianae." Physiological and Molecular Plant Pathology. 58 (5), pp. 189-198. https://doi.org/10.1006/pmpp.2001.0328
High and low pre-inoculation temperatures decrease the effectiveness of the Lr20 and Sr15 rust resistance genes in wheat
Ramage, R. A and Sutherland, Mark W.. 1995. "High and low pre-inoculation temperatures decrease the effectiveness of the Lr20 and Sr15 rust resistance genes in wheat." Plant Pathology. 44 (5), pp. 772-778. https://doi.org/10.1111/j.1365-3059.1995.tb02734.x
Mapping QTLs for polyphenol oxidase activity in a DH population from common wheat
Zhang, Li-Ping, Ge, Xiu-Xiu, He, Zhong-Hu, Wang, De-Sen, Yan, Jun, Xia, Xian-Chun and Sutherland, Mark W.. 2005. "Mapping QTLs for polyphenol oxidase activity in a DH population from common wheat." Zuowu Xuebao. 31 (1), pp. 7-10.
Biological methods: a novel course in undergraduate biology
Kotiw, Michael, Learmonth, Robert P. and Sutherland, Mark W.. 1999. "Biological methods: a novel course in undergraduate biology." Biochemical Education. 27 (3), pp. 131-134. https://doi.org/10.1016/S0307-4412(99)00002-3
Mapping markers for priority traits in the northern grains region of Australia
Mace, E., Sutherland, Mark, Lehmensiek, Anke, Bovill, Bill, Bovill, Jessica, Collard, Bert, Daggard, Grant and Christopher, M. J.. 2006. "Mapping markers for priority traits in the northern grains region of Australia." ITMI Workshop and ACPFG Genomics Symposium (2006). Victor Harbour, Australia 27 - 31 Aug 2006
Genetic control of dormancy in white-grained wheats of diverse origin
Mares, Daryl, Mrva, Kolumbina, Cheong, Judy, Williams, Kevin, Cavallaro, Benedette, Storlie, Eric, Sutherland, Mark and Zou, Y.. 2004. "Genetic control of dormancy in white-grained wheats of diverse origin." Black, C. K., Panozzo, J. F. and Rebetzke, G. J. (ed.) 54th Australian Cereal Chemistry Conference (CEREALS 2004). Canberra, Australia 21 - 24 Sep 2004 Melbourne, Australia.
Identification, validation, and pyramiding of quantitative trait loci for resistance to crown rot in wheat
Bovill, William D.. 2007. Identification, validation, and pyramiding of quantitative trait loci for resistance to crown rot in wheat. PhD Thesis Doctor of Philosophy. University of Southern Queensland.
Identification of novel QTL for resistance to crown rot in the doubled haploid wheat population 'W21MMT70' x 'Mendos'
Bovill, W. D., Ma, W., Ritter, K., Collard, B. C. Y., Davis, M., Wildermuth, G. B. and Sutherland, M. W.. 2006. "Identification of novel QTL for resistance to crown rot in the doubled haploid wheat population 'W21MMT70' x 'Mendos' ." Plant Breeding. 125 (6), pp. 538-543. https://doi.org/10.1111/j.1439-0523.2006.01251.x
Effectiveness of partial resistance sources in hexaploid wheats against fusarium pseudograminearum isolates
Percy, C. D., Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Effectiveness of partial resistance sources in hexaploid wheats against fusarium pseudograminearum isolates." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong, Australia.
Strategies for fine mapping QTLs for crown rot resistance in wheats
Bovill, W. D., Collard, B. C. Y., Lehmensiek, Anke, Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Strategies for fine mapping QTLs for crown rot resistance in wheats." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong.
Excel table of genotyping data of the markers on the A and B genome chromosomes of eight hexaploid/tetraploid populations
Martin, Anke, Sutherland, Mark W. and Eberhard, Susette. 2007. Excel table of genotyping data of the markers on the A and B genome chromosomes of eight hexaploid/tetraploid populations. Toowoomba. University of Southern Queensland. https://doi.org/10.26192/q37y8
Targetting AFLP-DNA markers to specific traits and chromosome regions
Campbell, A. W., Daggard, G., Békés, F., Pedler, A., Sutherland, M. W and Appels, R.. 2001. "Targetting AFLP-DNA markers to specific traits and chromosome regions ." Australian Journal of Agricultural Research. 52 (11-12), pp. 1153-1160. https://doi.org/10.1071/ar01028