Targetting AFLP-DNA markers to specific traits and chromosome regions
Article
Campbell, A. W., Daggard, G., Békés, F., Pedler, A., Sutherland, M. W and Appels, R.. 2001. "Targetting AFLP-DNA markers to specific traits and chromosome regions
." Australian Journal of Agricultural Research. 52 (11-12), pp. 1153-1160. https://doi.org/10.1071/ar01028
| Article Title | Targetting AFLP-DNA markers to specific traits and chromosome regions |
|---|---|
| ERA Journal ID | 5177 |
| Article Category | Article |
| Authors | Campbell, A. W., Daggard, G., Békés, F., Pedler, A., Sutherland, M. W and Appels, R. |
| Journal Title | Australian Journal of Agricultural Research |
| Journal Citation | 52 (11-12), pp. 1153-1160 |
| Number of Pages | 8 |
| Year | 2001 |
| Publisher | CSIRO Publishing |
| Place of Publication | Australia |
| ISSN | 0004-9409 |
| 1444-9838 | |
| Digital Object Identifier (DOI) | https://doi.org/10.1071/ar01028 |
| Web Address (URL) | https://www.publish.csiro.au/cp/AR01028 |
| Abstract | The amplified fragment length polymorphism (AFLP) technique is widely used in mapping of wheat as high polymorphism rates are obtained and the procedure is relatively simple. In this study the AFLP markers were targetted to wheat chromosome regions of interest, especially those in which random mapping approaches located relatively few markers. Results showed that the combination of bulk segregant analysis and AFLP markers could target new markers to regions of interest in wheat, and as a result, additional markers were identified for the dough mixing time and noodle colour traits. The new markers for noodle colour were closer to this trait than the markers previously identified by random procedures. As a result, their association with the trait was more significant, an aspect that is important for selection efficiency. In order to improve genome coverage, it was found that regions of chromosomes containing telomere sequences could be targetted using AFLPs combined with a telomere sequence anchor primer. |
| Keywords | AFLP; Gaps in genetic map; Quantitative traits; Wheat |
| Public Notes | Files associated with this item cannot be displayed due to copyright restrictions. |
| Byline Affiliations | University of Southern Queensland |
| Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australia |
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Yang, Ennian, Zou, Yuchun, Yang, Wuyun and Sutherland, Mark. 2006. "Inheritance of resistance to Chinese stripe rust on Australian wheat variety Sunco." Chinese Agricultural Science Bulletin. 22 (5), pp. 355-357.Flour yield QTLs in three Australian doubled haploid wheat populations
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W., Martin, D. and Daggard, G. E.. 2006. "Flour yield QTLs in three Australian doubled haploid wheat populations." Australian Journal of Agricultural Research. 57 (10), pp. 1115-1122. https://doi.org/10.1071/AR05375Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'
Collard, B. C. Y., Jolley, R., Bovill, W. D., Grams, R. A., Wildermuth, G. B. and Sutherland, M. W.. 2006. "Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'." Australian Journal of Agricultural Research. 57 (9), pp. 967-973. https://doi.org/10.1071/AR05419Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population
Collard, B. C. Y., Grams, R. A., Bovill, W. D., Percy, C. D., Jolley, R., Lehmensiek, A., Wildermuth, G. B. and Sutherland, M. W.. 2005. "Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population." Plant Breeding. 124 (6), pp. 532-537. https://doi.org/10.1111/j.1439-0523.2005.01163.xA QTL located on chromosome 4A associated with dormancy in white- and red-grained wheats of diverse origin
Mares, D., Mrva, K., Cheong, J., Williams, K., Watson, B., Storlie, E., Sutherland, M. and Zou, Y.. 2005. "A QTL located on chromosome 4A associated with dormancy in white- and red-grained wheats of diverse origin." Theoretical and Applied Genetics: international journal of plant breeding research. 111 (7), pp. 1357-1364. https://doi.org/10.1007/s00122-005-0065-5Finding similar patterns in microarray data
Chen, Xiangsheng, Li, Jiuyong, Daggard, Grant and Huang, Xiaodi. 2005. "Finding similar patterns in microarray data." Zhang, Shichao and Jarvis, Ray (ed.) AI 2005: Advances in artificial intelligence. Berlin, Germany. Springer. pp. 1272-1276Molecular characterization of a Triticum timopheevii introgression in a Wentworth/Lang population
Lehmensiek, A., Bovill, W. D., Banks, P. M. and Sutherland, M. W.. 2008. "Molecular characterization of a Triticum timopheevii introgression in a Wentworth/Lang population." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Progress in comparing fusarium pseudograminearum infection levels and crown rot symptoms in stem internodes of cereals
Petrisko, J. E., Knight, N. and Sutherland, M. W.. 2010. "Progress in comparing fusarium pseudograminearum infection levels and crown rot symptoms in stem internodes of cereals." Stirling, Graham R. (ed.) 6th Australasian Soilborne Diseases Symposium. Twin Waters, Australia 09 - 11 Aug 2010 Australia.Infection of wheat tissues by fusarium pseudograminearum
Knight, N. L., Percy, C., Lehmensiek, A., Herde, D. J. and Sutherland, M. W.. 2008. "Infection of wheat tissues by fusarium pseudograminearum." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance
Nicol, J. M., Sahin, E., Wallwork, H., Chakraborty, S., Lu, M., O'Brien, L., Sutherland, M., Horne, M., Simpfendorfer, S., Herde, D., Ogbonnaya, F., Duvellier, E., Bolat, N., Yahyaoui, A., Buerstmayr, H., Lewis, J., Crossa, J., Singh, A. K., Bishnoi, S. P., ..., Gargouri, S.. 2008. "Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance." Appels, Rudi (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Validation of black point QTL in wheat
Tah, P. R., Lehmensiek, A., Williamson, P. M., Michalowitz, M., Done, A. and Daggard, G. E.. 2008. "Validation of black point QTL in wheat." Appels, Rudi, Eastwood, Russell, Lagudah, Peter, Mackay, Michael, McIntyre, Lynne and Sharp, Peter J. (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.Identification of genetic regions associated with black point in barley
Tah, Priya R., Lehmensiek, A., Fox, Glen P., Mace, Emma, Sulman, Maria, Bloustein, Gary and Daggard, Grant E.. 2010. "Identification of genetic regions associated with black point in barley." Field Crops Research. 115 (1), pp. 61-66. https://doi.org/10.1016/j.fcr.2009.10.003Mapping spot blotch resistance genes in four barley populations
Bovill, Jessica, Lehmensiek, Anke, Sutherland, Mark W., Platz, Greg. J., Usher, Terry, Franckowiak, Jerome and Mace, Emma. 2010. "Mapping spot blotch resistance genes in four barley populations." Molecular Breeding: new strategies in plant improvement. 26 (4), pp. 653-666. https://doi.org/10.1007/s11032-010-9401-9Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH
Eberhard, Friederike S., Zhang, Peng, Lehmensiek, Anke, Hare, Ray A., Simpfendorfer, Steven and Sutherland, Mark W.. 2010. "Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH." Crop and Pasture Science. 61 (8), pp. 619-624. https://doi.org/10.1071/CP10131An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley
Knight, N. L., Platz, G. J., Lehmensiek, A. and Sutherland, M. W.. 2010. "An investigation of genetic variation among Australian isolates of Bipolaris sorokiniana from different cereal tissues and comparison of their abilities to cause spot blotch on barley." Australasian Plant Pathology. 39 (3), pp. 207-216. https://doi.org/10.1071/AP09082Genomic regions associated with common root rot resistance in the barley variety Delta
Lehmensiek, A., Bovill, J., Sutherland, M. W. and McNamara, R. B.. 2010. "Genomic regions associated with common root rot resistance in the barley variety Delta." Australasian Plant Pathology. 39 (3), pp. 241-246. https://doi.org/10.1071/AP09089Population structure of South African and Australian Pyrenophora teres isolates
Lehmensiek, A., Bester-van der Merwe, A. E., Sutherland, M. W., Platz, G., Kriel, W. M., Potgieter, G. F. and Prins, R.. 2010. "Population structure of South African and Australian Pyrenophora teres isolates." Plant Pathology. 59 (3), pp. 504-515. https://doi.org/10.1111/j.1365-3059.2009.02231.xPyramiding QTL increases seedling resistance to crown rot (Fusarium pseudograminearum) of wheat (Triticum aestivum)
Bovill, W. D., Horne, M., Herde, D., Davis, M., Wildermuth, G. B. and Sutherland, M. W.. 2010. "Pyramiding QTL increases seedling resistance to crown rot (Fusarium pseudograminearum) of wheat (Triticum aestivum)." Theoretical and Applied Genetics: international journal of plant breeding research. 121 (1), pp. 127-136. https://doi.org/10.1007/s00122-010-1296-7Genetic mapping in the Triticeae
Lehmensiek, Anke, Bovill, William, Wenzl, Peter, Langridge, Peter and Appels, Rudi. 2009. "Genetic mapping in the Triticeae." Feuillet, Catherine and Muehlbauer, Gary (ed.) Genetics and genomics of the Triticeae. New York, NY. United States. Springer. pp. 201-235The generation of oxygen radicals during host plant responses to infection
Sutherland, Mark W.. 1991. "The generation of oxygen radicals during host plant responses to infection." Physiological and Molecular Plant Pathology. 39 (1), pp. 71-93.The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression
Birney, Genevieve, Liu, Guang B. and Daggard, Grant. 2010. "The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression." ASMR Queensland Postgraduate Student Conference 2010. St Lucia, Australia 02 Jun 2010 St. Lucia, Australia.Genes involved in hypersensitive cell death responses during fusarium crown rot infection in wheat
Petrisko, Jill E., Sutherland, Mark W. and Windes, Juliet M.. 2009. "Genes involved in hypersensitive cell death responses during fusarium crown rot infection in wheat." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.Regional frost: calibration of frost chamber to encompass all Australian conditions
Daggard, Grant and Vickers, Joan. 2009. "Regional frost: calibration of frost chamber to encompass all Australian conditions." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Brisbane, Australia.Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley
Sutherland, M. W., Lehmensiek, A., Leist, C., Platz, G. and Usher, T. R.. 2009. "Bipolaris sorokiniana resistance loci identified on chromosomes 3HS and 7HS in three related barley." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Indooroopilly, Australia.Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH
Eberhard, F. S., Zhang, P., Lehmensiek, A., Sutherland, M. W., Hare, R. and Simpfendorfer, S.. 2008. "Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH." Appels, Rudi, Eastwood, Russell, Lagudah, Evans, Mackay, Michael, McIntyre, Lynne, Sharp, Peter and Langridge, Peter (ed.) 11th International Wheat Genetics Sympoium (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats
Sutherland, Mark, Bovill, W. D., Horne, M., Lehmensiek, A., Eberhard, F., Percy, C., Wildermuth, G. B., Simpfendorfer, S. and Hare, R.. 2008. "The application of molecular markers for partial resistance against fusarium crown rot in hexaploid and tetraploid wheats." 10th International Fusarium and Fusarium Genomics Workshop 2008. Sardinia, Italy 30 Aug - 02 Sep 2008 Sardinia,Italy.Segregation of glutenins in wheatxmaize-derived doubled haploid wheat populations
Kammholz, Stephen J., Grams, Raechelle A., Banks, Phillip and Sutherland, Mark W.. 1998. "Segregation of glutenins in wheatxmaize-derived doubled haploid wheat populations." Australian Journal of Agricultural Research. 49 (8), pp. 1253-1259. https://doi.org/10.1071/A98032Use of a new tetrazolium-based assay to study the production of superoxide radicals by tobacco cell cultures challenged with avirulent zoospores of Phytopthora parasitica var nicotianae
Able, Amanda J., Guest, David I. and Sutherland, Mark W.. 1998. "Use of a new tetrazolium-based assay to study the production of superoxide radicals by tobacco cell cultures challenged with avirulent zoospores of Phytopthora parasitica var nicotianae." Plant Physiology. 117 (2), pp. 491-499.The tetrazolium dyes MTS and XTT provide new quantitative assays for superoxide and superoxide dismutase
Sutherland, Mark W. and Learmonth, Barbara A.. 1997. "The tetrazolium dyes MTS and XTT provide new quantitative assays for superoxide and superoxide dismutase." Free Radical Research. 27 (3), pp. 283-289. https://doi.org/10.3109/10715769709065766Improving the efficiency of haploid wheat production mediated by wide crossing
Kammholz, Stephen J., Sutherland, Mark W. and Banks, Phillip. 1996. "Improving the efficiency of haploid wheat production mediated by wide crossing." Sabrao Journal. 28, pp. 37-46.Hydrogen peroxide yields during the incompatible interaction of tobacco suspension cells inoculated with Phytophthora nicotiannae
Able, Amanda J., Guest, David I. and Sutherland, Mark W.. 2000. "Hydrogen peroxide yields during the incompatible interaction of tobacco suspension cells inoculated with Phytophthora nicotiannae." Plant Physiology. 124 (2), pp. 899-910.Relationship between transembrane ion movements, production of reactive oxygen species and the hypersensitive response during the challenge of tobacco suspension cells by zoospores of Phytophthora nicotianae
Able, Amanda J., Guest, David I. and Sutherland, Mark W.. 2001. "Relationship between transembrane ion movements, production of reactive oxygen species and the hypersensitive response during the challenge of tobacco suspension cells by zoospores of Phytophthora nicotianae." Physiological and Molecular Plant Pathology. 58 (5), pp. 189-198. https://doi.org/10.1006/pmpp.2001.0328High and low pre-inoculation temperatures decrease the effectiveness of the Lr20 and Sr15 rust resistance genes in wheat
Ramage, R. A and Sutherland, Mark W.. 1995. "High and low pre-inoculation temperatures decrease the effectiveness of the Lr20 and Sr15 rust resistance genes in wheat." Plant Pathology. 44 (5), pp. 772-778. https://doi.org/10.1111/j.1365-3059.1995.tb02734.xMapping QTLs for polyphenol oxidase activity in a DH population from common wheat
Zhang, Li-Ping, Ge, Xiu-Xiu, He, Zhong-Hu, Wang, De-Sen, Yan, Jun, Xia, Xian-Chun and Sutherland, Mark W.. 2005. "Mapping QTLs for polyphenol oxidase activity in a DH population from common wheat." Zuowu Xuebao. 31 (1), pp. 7-10.Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis
Farrell, D. J., McKeon, M., Daggard, G., Loeffelholz, M. J., Thompson, C. J. and Mukkur, T. K. S.. 2000. "Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis." Journal of Clinical Microbiology. 38 (12), pp. 4499-4502.Nested duplex PCR to detect bordetella pertussis and bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia
Farrell, D. J., Daggard, G. and Mukkur, T. K. S.. 1999. "Nested duplex PCR to detect bordetella pertussis and bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia." Journal of Clinical Microbiology. 37 (3), pp. 606-610.Biological methods: a novel course in undergraduate biology
Kotiw, Michael, Learmonth, Robert P. and Sutherland, Mark W.. 1999. "Biological methods: a novel course in undergraduate biology." Biochemical Education. 27 (3), pp. 131-134. https://doi.org/10.1016/S0307-4412(99)00002-3Mapping markers for priority traits in the northern grains region of Australia
Mace, E., Sutherland, Mark, Lehmensiek, Anke, Bovill, Bill, Bovill, Jessica, Collard, Bert, Daggard, Grant and Christopher, M. J.. 2006. "Mapping markers for priority traits in the northern grains region of Australia." ITMI Workshop and ACPFG Genomics Symposium (2006). Victor Harbour, Australia 27 - 31 Aug 2006Genetic control of dormancy in white-grained wheats of diverse origin
Mares, Daryl, Mrva, Kolumbina, Cheong, Judy, Williams, Kevin, Cavallaro, Benedette, Storlie, Eric, Sutherland, Mark and Zou, Y.. 2004. "Genetic control of dormancy in white-grained wheats of diverse origin." Black, C. K., Panozzo, J. F. and Rebetzke, G. J. (ed.) 54th Australian Cereal Chemistry Conference (CEREALS 2004). Canberra, Australia 21 - 24 Sep 2004 Melbourne, Australia.A maximally diversified multiple decision tree algorithm for microarray data classification
Hu, Hong, Li, Jiuyong, Wang, Hua, Daggard, Grant and Shi, Mingren. 2006. "A maximally diversified multiple decision tree algorithm for microarray data classification." Boden, Mikael and Bailey, Timothy (ed.) Workshop on Intelligent Systems for Bioinformatics (2006). Hobart, Australia 04 Dec 2006 Sydney, Australia.A comparative study of classification methods for microarray data analysis
Hu, Hong, Li, Jiuyong, Plank, Ashley, Wang, Hua and Daggard, Grant. 2006. "A comparative study of classification methods for microarray data analysis." Christen, Peter, Kennedy, Paul J., Li, Jiuyong, Simoff, Simeon J. and Williams, Graham J. (ed.) 5th Australasian Conference on Data Mining and Analystics (AusDM 2006). Sydney, Australia 29 - 30 Nov 2006 Canberra, Australia.Identification of novel QTL for resistance to crown rot in the doubled haploid wheat population 'W21MMT70' x 'Mendos'
Bovill, W. D., Ma, W., Ritter, K., Collard, B. C. Y., Davis, M., Wildermuth, G. B. and Sutherland, M. W.. 2006. "Identification of novel QTL for resistance to crown rot in the doubled haploid wheat population 'W21MMT70' x 'Mendos' ." Plant Breeding. 125 (6), pp. 538-543. https://doi.org/10.1111/j.1439-0523.2006.01251.xEffectiveness of partial resistance sources in hexaploid wheats against fusarium pseudograminearum isolates
Percy, C. D., Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Effectiveness of partial resistance sources in hexaploid wheats against fusarium pseudograminearum isolates." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong, Australia.A metabolite-deficient mutant of Bordetella pertussis that induces secretory IgA and cell-mediated immunity in mice vaccinated by the intranasal route
Mukkur, T. K. S., Cornford-Nairn, Renee A., Rossetti, T., Kershaw, S., Fry, Scott Robert, Xu, Youhong and Daggard, Grant A.. 2005. "A metabolite-deficient mutant of Bordetella pertussis that induces secretory IgA and cell-mediated immunity in mice vaccinated by the intranasal route." Fang, Ferric C. (ed.) 105th American Society for Microbiology: General Meeting. Atlanta, Georgia 05 - 09 Jun 2005 Washington.Strategies for fine mapping QTLs for crown rot resistance in wheats
Bovill, W. D., Collard, B. C. Y., Lehmensiek, Anke, Wildermuth, G. B. and Sutherland, Mark W.. 2005. "Strategies for fine mapping QTLs for crown rot resistance in wheats." Cahill, David (ed.) 15th Biennial Australasian Plant Pathology Society Conference. Geelong, Australia 26 - 29 Sep 2005 Geelong.Excel table of genotyping data of the markers on the A and B genome chromosomes of eight hexaploid/tetraploid populations
Martin, Anke, Sutherland, Mark W. and Eberhard, Susette. 2007. Excel table of genotyping data of the markers on the A and B genome chromosomes of eight hexaploid/tetraploid populations. Toowoomba. University of Southern Queensland. https://doi.org/10.26192/q37y8Preparation of total RNA from a very small wheat embryo suitable for differential display
Chen, Yihua, Weining, Song and Daggard, Grant. 2003. "Preparation of total RNA from a very small wheat embryo suitable for differential display ." Annals of Applied Biology. 143 (2), pp. 261-264. https://doi.org/10.1111/j.1744-7348.2003.tb00293.xEnhanced shoot regeneration in nine Australian wheat cultivars by spermidine and water stress treatments
Khanna, Harjeet K. and Daggard, Grant E.. 2001. "Enhanced shoot regeneration in nine Australian wheat cultivars by spermidine and water stress treatments ." Australian Journal of Plant Physiology. 28 (12), pp. 1243-1247. https://doi.org/10.1071/pp01115The statistical analysis of quality traits in plant improvement programs with application to the mapping of milling yield in wheat
Smith, A. B., Cullis, B. R., Appels, R., Campbell, A. W., Cornish, G. B., Martin, D. and Allen, H. M.. 2001. "The statistical analysis of quality traits in plant improvement programs with application to the mapping of milling yield in wheat." Australian Journal of Agricultural Research. 52 (12), pp. 1207-1219. https://doi.org/10.1071/AR01058This item comprises data from the following sources: Scopus