Finding similar patterns in microarray data
Edited book (chapter)
Chapter Title | Finding similar patterns in microarray data |
---|---|
Book Chapter Category | Edited book (chapter) |
ERA Publisher ID | 3337 |
Book Title | AI 2005: Advances in artificial intelligence |
Authors | Chen, Xiangsheng (Author), Li, Jiuyong (Author), Daggard, Grant (Author) and Huang, Xiaodi (Author) |
Editors | Zhang, Shichao and Jarvis, Ray |
Page Range | 1272-1276 |
Series | Lecture Notes in Computer Science |
Number of Pages | 5 |
Year | 2005 |
Publisher | Springer |
Place of Publication | Berlin, Germany |
ISBN | 3540304622 |
ISSN | 0302-9743 |
Digital Object Identifier (DOI) | https://doi.org/10.1007/11589990_185 |
Web Address (URL) | https://link.springer.com/chapter/10.1007/11589990_185 |
Abstract | In this paper we propose a clustering algorithm called s-Cluster for analysis of gene expression data based on pattern-similarity. The algorithm captures the tight clusters exhibiting strong similar expression patterns in Microarray data,and allows a high level of overlap among discovered clusters without completely grouping all genes like other algorithms. This reflects the biological fact that not all functions are turned on in an experiment, and that many genes are co-expressed in multiple groups in response to different stimuli. The experiments have demonstrated that the proposed algorithm successfully groups the genes with strong similar expression patterns and that the found clusters are interpretable. |
Keywords | data mining, bioinformatics, microarray data analysis, clustering |
ANZSRC Field of Research 2020 | 490501. Applied statistics |
310505. Gene expression (incl. microarray and other genome-wide approaches) | |
Public Notes | File reproduced in accordance with the copyright policy of the publisher/author. |
Byline Affiliations | Department of Mathematics and Computing |
Department of Biological and Physical Sciences | |
University of New South Wales | |
Event | 18th Australian Joint Conference on Artificial Intelligence |
Journal Title | AI 2005: advances in artificial intelligence |
Event Details | 18th Australian Joint Conference on Artificial Intelligence Event Date 05 to end of 09 Dec 2005 Event Location Sydney, Australia |
https://research.usq.edu.au/item/9xq49/finding-similar-patterns-in-microarray-data
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