The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression

Poster

Birney, Genevieve, Liu, Guang B. and Daggard, Grant. 2010. "The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression." ASMR Queensland Postgraduate Student Conference 2010. St Lucia, Australia 02 Jun 2010 St. Lucia, Australia.
Paper/Presentation Title

The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression

Presentation TypePoster
AuthorsBirney, Genevieve (Author), Liu, Guang B. (Author) and Daggard, Grant (Author)
Year2010
Place of PublicationSt. Lucia, Australia
Web Address (URL) of Paperhttp://www.asmr.org.au/MRWQld.html
Conference/EventASMR Queensland Postgraduate Student Conference 2010
Event Details
ASMR Queensland Postgraduate Student Conference 2010
Event Date
02 Jun 2010
Event Location
St Lucia, Australia
Abstract

It is accepted that breast cancer (BC) is a heterogeneous disease. In order to investigate BC as a group of disease sub-types, the varying clinical characteristics of BC patients must be considered. In this project a series of clinical, pathological, genetic and genomic data, retrieved from multiple data repositories, will be reviewed for selection in a large-scale meta-analysis and then categorised into 5 sub-groups (Luminal A, Luminal B, Basal, HER2 and Normal). The meta-analysis is primarily designed to ascertain if a correlation exists between the mutation of protein kinase (PK) genes and BC progression. As PK genes play important roles in regulating most cellular processes (e.g. cell proliferation, differentiation and apoptosis), it is no surprise that deregulated PK activity is a frequent cause of disease, and that PK genes are often oncogenes.

The meta-analysis objectives are two-fold:
1. To conduct an integrative meta-analysis of the differential gene expression of the PK gene family between clinical categories of BC progression (low vs high proliferation; luminal vs basal tissue; and grade 1 vs grade 3 tumours). Results from the meta-analysis will generate a ranked list of PK gene expression profiles observed in BC progression.
2. Through the use of powerful bioinformatics tools and sequence analysis interfaces the ranked PK list will be used to direct investigations into the correlations between: codon usage bias; aberrant epigenetic factors; somatic mutations; and observed structural/functional changes of deregulated PK genes in different BC progression categories.
To address these objectives a series of in silico bioinformatics experiments have been designed. A software program (MYGEO) has been specifically written for: multiple dataset download; calculation of p-values between BC progression groups; finding Q-values to control for the false discovery rate over multiple dataset comparisons; and to perform permutation testing on the ranked PK gene list; and 2D/3D sequence analysis functions for the analysis of structure/function relationships in significantly differentiated PK genes in BC progression.
This project will benefit our understanding of the complex system of BC biology by identifying significantly deregulated PK genes in BC progression. The results will identify BC biomarkers and structural/functional locations within PK genes not yet elucidated, thus providing new directions for the development of PK inhibitors and improving the effectiveness of current BC treatment strategies.

Keywordsbreast cancer; protein kinase genes; mutation; correlation
ANZSRC Field of Research 2020310114. Systems biology
310299. Bioinformatics and computational biology not elsewhere classified
310505. Gene expression (incl. microarray and other genome-wide approaches)
Public Notes

Only abstracts published in the conference proceedings, as supplied here.

Byline AffiliationsDepartment of Biological and Physical Sciences
Permalink -

https://research.usq.edu.au/item/q0187/the-correlation-between-the-mutation-of-protein-kinase-genes-and-the-clinical-characteristics-of-breast-cancer-progression

Log in to edit

Download files

Submitted Version
Birney_Liu_Daggard_AV.pdf
File access level: Anyone

  • 1915
    total views
  • 139
    total downloads
  • 0
    views this month
  • 0
    downloads this month

Export as

Related outputs

Functional hemispheric asynchrony: an optical imaging study
Liu, Guang Bin and Pettigrew, John. 2002. "Functional hemispheric asynchrony: an optical imaging study." 22nd Annual Meeting of the Australian Neuroscience Society (ANS 2002). Sydney, Australia Mar 2002 Sydney.
Fourth generation of the BiReme system
Liu, Guang Bin and Pettigrew, John. 2004. "Fourth generation of the BiReme system." 24th Annual Meeting of the Australian Neuroscience Society (ANS 2004). Melbourne, Australia 27 - 30 Jan 2004 Melbourne, Australia.
Structural and functional evolution of the TLR genes: a cross-species phylogenetic study and comparison with human oncogenes
Liu, Guang Bin. 2007. "Structural and functional evolution of the TLR genes: a cross-species phylogenetic study and comparison with human oncogenes." 2007 Bioinformatics Australia Conference. Brisbane, Australia 22 - 23 Oct 2007 Brisbane.
Comparison of epigenetic changes that have predisposed protein kinase genes to become oncogenes
Liu, Guang Bin, Pioth, Gabriel and Zheng, Qing Yin. 2009. "Comparison of epigenetic changes that have predisposed protein kinase genes to become oncogenes." Case Comprehensive Cancer Center Breast Cancer Retreat 2009. Cleveland, United States 05 - 06 Oct 2009 Cleveland, Ohio, United States.
Development of auditory function in the tammar wallaby Macropus eugenii
Hill, Kenneth G., Cone-Wesson, Barbara and Liu, Guang-Bin. 1998. "Development of auditory function in the tammar wallaby Macropus eugenii." Hearing Research. 117 (1-2), pp. 97-106. https://doi.org/10.1016/S0378-5955(97)00211-6
Virus, oncolytic virus and human prostate cancer
Liu, Guang Bin, Zhao, Liang, Zhang, Lifang and Zhao, Kong-Nan. 2017. "Virus, oncolytic virus and human prostate cancer ." Current Cancer Drug Targets. 17 (6), pp. 522-533. https://doi.org/10.2174/1568009616666161216095308
Cross-species comparison of CpG density in the promoter regions of protein kinase oncogenes
Pioth, Gabriel G., Zhao, Kong-Nan and Liu, Guang B.. 2015. "Cross-species comparison of CpG density in the promoter regions of protein kinase oncogenes." Bioengineering and Bioscience. 3 (3), pp. 29-38. https://doi.org/10.13189/bb.2015.030301
Association of human papillomavirus with Fanconi anemia promotes carcinogenesis in Fanconi anemia patients
Liu, Guang Bin, Chen, Jiezhong, Wu, Zhan He and Zhao, Kong-Nan. 2015. "Association of human papillomavirus with Fanconi anemia promotes carcinogenesis in Fanconi anemia patients." Reviews in Medical Virology. 25 (6), pp. 345-353. https://doi.org/10.1002/rmv.1834
The significance of non-coding sequence
Liu, Guang Bin. 2010. "The significance of non-coding sequence." China-Australia Science and Technology Forum 2010. Qing Dao, China 11 - 17 Oct 2010 China.
Bioinformatics today
Liu, Guang Bin. 2010. "Bioinformatics today." China-Australia Science and Technology Forum 2010. Qing Dao, China 11 - 17 Oct 2010 China.
Bioinformatic analysis indicates a relationship between CpG islands & nuclear protein function, as well as a Stop Codon Usage Bias
Berkman, Paul and Liu, Guang Bin. 2008. "Bioinformatic analysis indicates a relationship between CpG islands & nuclear protein function, as well as a Stop Codon Usage Bias." Bioinformatics Australia Conference (2008). Gold Coast, Queensland 01 - 03 Dec 2008 Gold Coast, Australia.
Dichoptic viewing methods for binocular rivalry research: prospects for large-scale clinical and genetic studies
Law, Phillip C. F, Paton, Bryan K., Thomson, Richard H., Liu, Guang B., Miller, Steven M. and Ngo, Trung T.. 2013. "Dichoptic viewing methods for binocular rivalry research: prospects for large-scale clinical and genetic studies." Twin Research and Human Genetics. 16 (6), pp. 1033-1078. https://doi.org/10.1017/thg.2013.76
Estrogen-induced cholestasis: pathogenesis and therapeutic implications
Chen, Jiezhong, Zhao, Kong-Nan and Liu, Guang Bin. 2013. "Estrogen-induced cholestasis: pathogenesis and therapeutic implications." Hepato-Gastroenterology: current medical and surgical trends. 60 (126), pp. 1296-1299. https://doi.org/10.5754/hge121061
Development of auditory sensitivity in the inferior colliculus of the tammar wallaby (Macropus eugenii)
Liu, Guang Bin, Hill, K. G. and Mark, R. F.. 1997. "Development of auditory sensitivity in the inferior colliculus of the tammar wallaby (Macropus eugenii)." Syka, Josef (ed.) International Symposium on Acoustical Signal Processing in the Central Auditory System (1997). Prague, Czech Republic 04 - 07 Sep 1996 Berlin, Germany. https://doi.org/10.1007/978-1-4419-8712-9_27
Construction and preliminary immunobiological characterization of a novel, non-reverting, intranasal live attenuated whooping cough vaccine candidate
Cornford-Nairns, R., Daggard, G. and Mukkur, T.. 2012. "Construction and preliminary immunobiological characterization of a novel, non-reverting, intranasal live attenuated whooping cough vaccine candidate." Journal of Microbiology and Biotechnology. 22 (6), pp. 856-865. https://doi.org/10.4014/jmb.1108.08003
Development of a binocular rivalry testing system for large-scale psychiatric and genetic studies
Law, P. C. F., Paton, B., Liu, G. B., Ngo, T. T. and Miller, S. M.. 2011. "Development of a binocular rivalry testing system for large-scale psychiatric and genetic studies." 1st Scientific Meeting of Biological Psychiatry Australia. Melbourne, Australia 07 - 08 Nov 2011 Melbourne, Australia.
Shared primer PCR combined with hybridisation for the detection of Bordetella Pertussis and B. Parapertussis
Farrell, David John, Daggard, Grant Edward and Mukkur, Trilochan Kanwaljit Singh. 2001. Shared primer PCR combined with hybridisation for the detection of Bordetella Pertussis and B. Parapertussis. WO/2001/90405
Defective entities and uses therefor
Cornford-Nairn, Renee, Daggard, Grant Edward, Mukkur, Trilochan Kanwaljit Singh and Rossetti, Tony Robert. 2008. Defective entities and uses therefor. AU2002357406
Parenteral immunization of mice with a genetically inactivated pertussis toxin DNA vaccine induces cell-mediated immunity and protection
Fry, Scott R., Chen, Austen Y., Daggard, Grant and Mukkur, Trilochan K. S.. 2008. "Parenteral immunization of mice with a genetically inactivated pertussis toxin DNA vaccine induces cell-mediated immunity and protection." Journal of Medical Microbiology. 57 (1), pp. 28-35. https://doi.org/10.1099/jmm.0.47527-0
Evaluation of immune response to recombinant potential protective antigens of Mycoplasma hyopneumoniae delivered as cocktail DNA and/or recombinant protein vaccines in mice
Chen, Austen Y., Fry, Scott R., Daggard, Grant E. and Mukkur, Trilochan K. S.. 2008. "Evaluation of immune response to recombinant potential protective antigens of Mycoplasma hyopneumoniae delivered as cocktail DNA and/or recombinant protein vaccines in mice." Vaccine. 26 (34), pp. 4372-4378. https://doi.org/10.1016/j.vaccine.2008.06.005
Comparative immunogenicity of M. hyopneumoniae NrdF encoded in different expression systems delivered orally via attenuated S. typhimurium aroA in mice
Chen, Austen Y., Fry, Scott Robert, Forbes-Faulkner, Judy, Daggard, Grant and Mukkur, T. K. S.. 2006. "Comparative immunogenicity of M. hyopneumoniae NrdF encoded in different expression systems delivered orally via attenuated S. typhimurium aroA in mice." Veterinary Microbiology. 114 (3-4), pp. 252-259. https://doi.org/10.1016/j.vetmic.2005.12.009
Anchor primer associated problems in differential display reverse transcription polymerase chain reaction
Chen, Yihua, Wang, Bin, Weining, Song and Daggard, Grant. 2004. "Anchor primer associated problems in differential display reverse transcription polymerase chain reaction." Analytical Biochemistry. 329 (1), pp. 145-147. https://doi.org/10.1016/j.ab.2004.02.030
Structural and functional characteristics of the promoter regions of the genes on human chromosome 22
Liu, Guang Bin. 2007. "Structural and functional characteristics of the promoter regions of the genes on human chromosome 22." 5th Asia-Pacific Bioinformatics Conference (APBC2007). Hong Kong, China 15 - 17 Jan 2007 Hong Kong.
Auditory brainstem response in tammar wallaby (Macropus eugenii)
Cone-Wesson, Barbara, Hill, Kenneth G. and Liu, Guang B.. 1997. "Auditory brainstem response in tammar wallaby (Macropus eugenii)." Hearing Research. 105 (1-2), pp. 119-129. https://doi.org/10.1016/S0378-5955(96)00199-2
Agrobacterium tumefaciens-mediated transformation of wheat using a superbinary vector and a polyamine-supplemented regeneration medium
Khanna, Harjeet and Daggard, Grant. 2003. "Agrobacterium tumefaciens-mediated transformation of wheat using a superbinary vector and a polyamine-supplemented regeneration medium." Plant Cell Reports. 21 (5), pp. 429-436. https://doi.org/10.1007/s00299-002-0529-x
Robustness analysis of diversified ensemble decision tree algorithms for microarray data classification
Hu, Hong, Li, Jiuyong, Wang, Hua, Daggard, Grant and Wang, Li-Zhen. 2008. "Robustness analysis of diversified ensemble decision tree algorithms for microarray data classification." ICMLC 2008: 7th International Conference on Machine Learning and Cybernetics. Kunming, China 12 - 15 Jul 2008 United States. https://doi.org/10.1109/ICMLC.2008.4620389
A RAPD-PCR genotyping assay which correlates with serotypes of group B streptococci
Zhang, G. W., Kotiw, M. and Daggard, G.. 2002. "A RAPD-PCR genotyping assay which correlates with serotypes of group B streptococci." Letters in Applied Microbiology. 35 (3), pp. 247-250. https://doi.org/10.1046/j.1472-765X.2002.01177.x
Late-onset and recurrent neonatal group B streptococcal disease associated with breast milk transmission
Kotiw, Michael, Zhang, Gwang W., Daggard, Grant, Reiss-Levy, Elizabeth, Tapsall, John W. and Numa, Andrew. 2003. "Late-onset and recurrent neonatal group B streptococcal disease associated with breast milk transmission." Pediatric and Developmental Pathology. 6 (3), pp. 251-256. https://doi.org/10.1007/s10024-001-0276-y
Targeted expression of redesigned and codon optimised synthetic gene leads to recyrstallisation inhibition and reduced electrolyte leakage in spring wheat at sub-zero temperatures
Khanna, Harjeet K. and Daggard, Grant E.. 2006. "Targeted expression of redesigned and codon optimised synthetic gene leads to recyrstallisation inhibition and reduced electrolyte leakage in spring wheat at sub-zero temperatures." Plant Cell Reports. 25 (12), pp. 1336-1346. https://doi.org/10.1007/s00299-006-0191-9
Construction of three linkage maps in bread wheat, Triticum aestivum
Chalmers, K. J., Campbell, A. W., Kretschmer, J., Karakousis, A., Henschke, P. H., Pierens, S., Harker, N., Pallotta, M., Cornish, G. B., Sharifiou, M. R., Rampling, L. R., McLauchlan, A., Daggard, G., Sharp, P. J., Holton, T. A., Sutherland, M. W., Appels, R. and Langridge, P.. 2001. "Construction of three linkage maps in bread wheat, Triticum aestivum." Australian Journal of Agricultural Research. 52 (12), pp. 1089-1119. https://doi.org/10.1071/AR01081
Curation of wheat maps to improve map accuracy and QTL detection
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W. and Daggard, G. E.. 2005. "Curation of wheat maps to improve map accuracy and QTL detection." Australian Journal of Agricultural Research. 56 (12), pp. 1347-1354. https://doi.org/10.1071/AR05126
QTLs for black-point resistance in wheat and the identification of potential markers for use in breeding programmes
Lehmensiek, A., Campbell, A. W., Williamson, P. M., Michalowitz, M., Sutherland, M. W. and Daggard, G. E.. 2004. "QTLs for black-point resistance in wheat and the identification of potential markers for use in breeding programmes." Plant Breeding. 123 (5), pp. 410-416. https://doi.org/10.1111/j.1439-0523.2004.01013.x
Neural responses to free-field auditory stimulation in the superior colliculus of the wallaby (Macropus eugenii)
Withington, D. J., Mark, R. F., Thornton, S. K., Liu, G. B. and Hill, K. G.. 1995. "Neural responses to free-field auditory stimulation in the superior colliculus of the wallaby (Macropus eugenii) ." Experimental Brain Research. 105 (2), pp. 233-240. https://doi.org/10.1007/BF00240959
Binocular rivalry and perceptual coherence
Ngo, Trung T., Miller, Steven M., Liu, Guang B. and Pettigrew, John D.. 2000. "Binocular rivalry and perceptual coherence ." Current Biology. 10 (4), pp. R134-R136. https://doi.org/10.1016/S0960-9822(00)00399-7
Functional development of the inferior colliculus (IC) and its relationship with the auditory brainstem response (ABR) in the tammar wallaby (Macropus eugenii)
Liu, Guang B. and Mark, Richard F.. 2001. "Functional development of the inferior colliculus (IC) and its relationship with the auditory brainstem response (ABR) in the tammar wallaby (Macropus eugenii) ." Hearing Research. 157 (1-2), pp. 112-123. https://doi.org/10.1016/S0378-5955(01)00289-1
Spreading and synchronization of intrinsic signals in visual cortex of macaque monkey evoked by a localized visual stimulus
Liu, Guang B., Zhang, Ying, Pettigrew, John D., Xu, Wei F. and Li, Chao-Yi. 2003. "Spreading and synchronization of intrinsic signals in visual cortex of macaque monkey evoked by a localized visual stimulus." Brain Research. 985 (1), pp. 13-20. https://doi.org/10.1016/S0006-8993(03)03049-X
Interhemispheric switching mediates perceptual rivalry
Miller, Steven M., Liu, Guang B., Ngo, Trung T., Hooper, Greg, Riek, Stephan, Carson, Richard G. and Pettigrew, John D.. 2000. "Interhemispheric switching mediates perceptual rivalry." Current Biology. 10 (7), pp. 383-392. https://doi.org/10.1016/S0960-9822(00)00416-4
Temporal relationship between the auditory brainstem response and focal responses of auditory nerve root and cochlear nucleus during development in the tammar wallaby (Macropus eugenii)
Liu, G. B., Hill, K. G. and Mark, R. F.. 2001. "Temporal relationship between the auditory brainstem response and focal responses of auditory nerve root and cochlear nucleus during development in the tammar wallaby (Macropus eugenii)." Audiology and Neurotology. 6 (3), pp. 140-153. https://doi.org/10.1159/000046821
Functional development of the auditory brainstem in the tammar wallaby (Macropus eugenii): the superior olivary complex and its relationship with the auditory brainstem response (ABR)
Liu, Guang B.. 2003. "Functional development of the auditory brainstem in the tammar wallaby (Macropus eugenii): the superior olivary complex and its relationship with the auditory brainstem response (ABR)." Hearing Research. 175 (1), pp. 152-164. https://doi.org/10.1016/S0378-5955(02)00733-5
Allelopathy, DIMBOA production and genetic variability in accessions of Triticum speltoides
Quader, Motiul, Daggard, Grant, Barrow, Russell A., Walker, Steven and Sutherland, Mark W.. 2001. "Allelopathy, DIMBOA production and genetic variability in accessions of Triticum speltoides." Journal of Chemical Ecology. 27 (4), pp. 747-760. https://doi.org/10.1023/A:1010354019573
Expression of a polygalacturonase enzyme in germinating pollen of Brassica napus
Dearnaley, John and Daggard, Grant. 2001. "Expression of a polygalacturonase enzyme in germinating pollen of Brassica napus." Sexual Plant Reproduction. 13 (5), pp. 265-271. https://doi.org/10.1007/s004970000062
Comprehensive analysis of prokaryotic mechanosensation genes: their characteristics in codon usage
Chen, Rong, Yan, Hong, Zhao, Kong-Nan, Martinac, Boris and Liu, Guang B.. 2007. "Comprehensive analysis of prokaryotic mechanosensation genes: their characteristics in codon usage." DNA Sequence. 18 (4), pp. 269-278. https://doi.org/10.1080/10425170601136564
Wheat flour protein content and water absorption analysis in a doubled haploid population
Ma, Wujun, Sutherland, Mark W., Kammholz, Stephen, Banks, Phillip, Brennan, Paul, Bovill, William and Daggard, Grant. 2007. "Wheat flour protein content and water absorption analysis in a doubled haploid population." Journal of Cereal Science. 45 (3), pp. 302-308. https://doi.org/10.1016/j.jcs.2006.10.005
Evaluation of the immunogenicity of the P97R1 adhesin of Mycoplasma hyopneumoniae as a mucosal vaccine in mice
Chen, Austen Y., Fry, Scott R., Forbes-Faulkner, Judy, Daggard, Grant and Mukkur, T. K. S.. 2006. "Evaluation of the immunogenicity of the P97R1 adhesin of Mycoplasma hyopneumoniae as a mucosal vaccine in mice." Journal of Medical Microbiology. 55 (7), pp. 923-929. https://doi.org/10.1099/jmm.0.46088-0
Testing for frost tolerance in wheat (Triticum aestivum L.) transformed with a gene for antifreeze protein
Vickers, Joan, Khanna, Harjeet, Christopher, Jack, Frederiks, Troy, Stephen, John, Sutherland, Mark W. and Daggard, Grant. 2006. "Testing for frost tolerance in wheat (Triticum aestivum L.) transformed with a gene for antifreeze protein." Breeding for Success: Diversity in Action (2006). Christchurch, New Zealand 18 - 21 Apr 2006 New Zealand.
Combined gene selection methods for microarray data analysis
Hu, Hong, Li, Jiuyong, Wang, Hua and Daggard, Grant. 2006. "Combined gene selection methods for microarray data analysis." Gabrys, Bogdan, Howlett, Robert J. and Jain, Lakhmi C. (ed.) 10th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES 2006). Bournemouth, United Kingdom 09 - 11 Oct 2006 Germany. Springer. https://doi.org/10.1007/11892960_117
Computational analysis of base composition pattern and promoter elements in the putative promoter regions in relation to expression profiles of 682 human genes on chromosome 22
Liu, Guang Bin, Jiang, Ya Fang, Yan, Hong and Zhao, Kong-Nan. 2006. "Computational analysis of base composition pattern and promoter elements in the putative promoter regions in relation to expression profiles of 682 human genes on chromosome 22." Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis. 17 (4), pp. 270-281. https://doi.org/10.1080/10425170600886136
Flour yield QTLs in three Australian doubled haploid wheat populations
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W., Martin, D. and Daggard, G. E.. 2006. "Flour yield QTLs in three Australian doubled haploid wheat populations." Australian Journal of Agricultural Research. 57 (10), pp. 1115-1122. https://doi.org/10.1071/AR05375
Finding similar patterns in microarray data
Chen, Xiangsheng, Li, Jiuyong, Daggard, Grant and Huang, Xiaodi. 2005. "Finding similar patterns in microarray data." Zhang, Shichao and Jarvis, Ray (ed.) AI 2005: Advances in artificial intelligence. Berlin, Germany. Springer. pp. 1272-1276
Validation of black point QTL in wheat
Tah, P. R., Lehmensiek, A., Williamson, P. M., Michalowitz, M., Done, A. and Daggard, G. E.. 2008. "Validation of black point QTL in wheat." Appels, Rudi, Eastwood, Russell, Lagudah, Peter, Mackay, Michael, McIntyre, Lynne and Sharp, Peter J. (ed.) 11th International Wheat Genetics Symposium 2008 (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Identification of genetic regions associated with black point in barley
Tah, Priya R., Lehmensiek, A., Fox, Glen P., Mace, Emma, Sulman, Maria, Bloustein, Gary and Daggard, Grant E.. 2010. "Identification of genetic regions associated with black point in barley." Field Crops Research. 115 (1), pp. 61-66. https://doi.org/10.1016/j.fcr.2009.10.003
Genetic contribution to individual variation in binocular rivalry rate
Miller, Steven M., Hansell, Narelle K., Ngo, Trung T., Liu, Guang B., Pettigrew, John D., Martin, Nicholas G. and Wright, Margaret J.. 2010. "Genetic contribution to individual variation in binocular rivalry rate." University of Adelaide. 107 (6), pp. 2664-2668. https://doi.org/10.1073/pnas.0912149107
Reciprocal interaction between three areas of the visual cortex of the cat revealed with optical imaging of intrinsic signals
Liu, Guang B., Zhang, Ying, Li, Chao-Yi and Pettigrew, John D.. 2003. "Reciprocal interaction between three areas of the visual cortex of the cat revealed with optical imaging of intrinsic signals." Australian Neuroscience Society 23rd Annual Meeting . Adelaide, Australia 28 - 31 Jan 2003 Adelaide.
The properties of CpG islands in the putative promoter regions of human immunoglobulin (Ig) genes
Liu, Guang B., Yan, Hong, Jiang, Ya F., Chen, Rong, Pettigrew, John D. and Zhao, Kong-Nan. 2005. "The properties of CpG islands in the putative promoter regions of human immunoglobulin (Ig) genes." Gene. 358 (1), pp. 127-138. https://doi.org/10.1016/j.gene.2005.06.002
Contradictory influence of context on binocular rivalry
Carter, Olivia L., Campbell, Thomas G., Liu, Guang B. and Wallis, Guy M.. 2004. "Contradictory influence of context on binocular rivalry." Clinical and Experimental Optometry. 87 (3), pp. 153-162. https://doi.org/10.1111/j.1444-0938.2004.tb03168.x
The changing face of perceptual rivalry
Ngo, Trung T., Liu, Guang B., Tilley, Andrew J., Pettigrew, John D. and Miller, Steven M.. 2008. "The changing face of perceptual rivalry." Brain Research Bulletin. 75 (5), pp. 610-618. https://doi.org/10.1016/j.brainresbull.2007.10.006
Regional frost: calibration of frost chamber to encompass all Australian conditions
Daggard, Grant and Vickers, Joan. 2009. "Regional frost: calibration of frost chamber to encompass all Australian conditions." Poulsen, David (ed.) ABTS 2009: Barley - The Grain for Gain. Sunshine Coast, Australia 13 - 16 Sep 2009 Brisbane, Australia.
Modulating the rate and rhythmicity of perceptual rivalry alternations with the mixed 5-HT2A and 5-HT1A agonist psilocybin
Carter, Olivia L., Pettigrew, John D., Hasler, Felix, Wallis, Guy M., Liu, Guang B., Hell, Daniel and Vollenweider, Franz X.. 2005. "Modulating the rate and rhythmicity of perceptual rivalry alternations with the mixed 5-HT2A and 5-HT1A agonist psilocybin." Neuropsychopharmacology. 30 (6), pp. 1154-1162. https://doi.org/10.1038/sj.npp.1300621
Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis
Farrell, D. J., McKeon, M., Daggard, G., Loeffelholz, M. J., Thompson, C. J. and Mukkur, T. K. S.. 2000. "Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis." Journal of Clinical Microbiology. 38 (12), pp. 4499-4502.
Nested duplex PCR to detect bordetella pertussis and bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia
Farrell, D. J., Daggard, G. and Mukkur, T. K. S.. 1999. "Nested duplex PCR to detect bordetella pertussis and bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia." Journal of Clinical Microbiology. 37 (3), pp. 606-610.
Mapping markers for priority traits in the northern grains region of Australia
Mace, E., Sutherland, Mark, Lehmensiek, Anke, Bovill, Bill, Bovill, Jessica, Collard, Bert, Daggard, Grant and Christopher, M. J.. 2006. "Mapping markers for priority traits in the northern grains region of Australia." ITMI Workshop and ACPFG Genomics Symposium (2006). Victor Harbour, Australia 27 - 31 Aug 2006
Psilocybin links binocular rivalry switch rate to attention and subjective arousal levels in humans
Carter, Olivia L., Hasler, Felix, Pettigrew, John D., Wallis, Guy M., Liu, Guang B. and Vollenweider, Franz X.. 2007. "Psilocybin links binocular rivalry switch rate to attention and subjective arousal levels in humans." Psychopharmacology. 195 (3), pp. 415-424. https://doi.org/10.1007/s00213-007-0930-9
Slow binocular rivalry in bipolar disorder
Miller, S. M., Gynther, B. D., Heslop, K. R., Liu, G. B., Mitchell, P. B., Ngo, T. T., Pettigrew, J. D. and Geffen, L. B.. 2003. "Slow binocular rivalry in bipolar disorder." Psychological Medicine. 33 (4), pp. 683-692. https://doi.org/10.1017/S0033291703007475
Orientation mosaic in barn owl’s visual Wulst revealed by optical imaging: comparison with cat and monkey striate and extra-striate areas
Liu, Guang Bin and Pettigrew, John Douglas. 2003. "Orientation mosaic in barn owl’s visual Wulst revealed by optical imaging: comparison with cat and monkey striate and extra-striate areas ." Brain Research. 961 (1), pp. 153-158. https://doi.org/10.1016/S0006-8993(02)03747-2
Caloric vestibular stimulation reveals discrete neural mechanisms for coherence rivalry and eye rivalry: a meta-rivalry model
Ngo, Trung T., Liu, Guang B., Tilley, Andrew J., Pettigrew, John D. and Miller, Steven M.. 2007. "Caloric vestibular stimulation reveals discrete neural mechanisms for coherence rivalry and eye rivalry: a meta-rivalry model." Vision Research. 47 (21), pp. 2685-2699. https://doi.org/10.1016/j.visres.2007.03.024
Meditation alters perceptual rivalry in Tibetan Buddhist monks
Carter, O. L., Presti, D. E., Callistemon, C., Ungerer, Y., Liu, G. B. and Pettigrew, J. D.. 2005. "Meditation alters perceptual rivalry in Tibetan Buddhist monks." Current Biology. 15 (11), pp. R412-R413. https://doi.org/10.1016/j.cub.2005.05.043
A maximally diversified multiple decision tree algorithm for microarray data classification
Hu, Hong, Li, Jiuyong, Wang, Hua, Daggard, Grant and Shi, Mingren. 2006. "A maximally diversified multiple decision tree algorithm for microarray data classification." Boden, Mikael and Bailey, Timothy (ed.) Workshop on Intelligent Systems for Bioinformatics (2006). Hobart, Australia 04 Dec 2006 Sydney, Australia.
A comparative study of classification methods for microarray data analysis
Hu, Hong, Li, Jiuyong, Plank, Ashley, Wang, Hua and Daggard, Grant. 2006. "A comparative study of classification methods for microarray data analysis." Christen, Peter, Kennedy, Paul J., Li, Jiuyong, Simoff, Simeon J. and Williams, Graham J. (ed.) 5th Australasian Conference on Data Mining and Analystics (AusDM 2006). Sydney, Australia 29 - 30 Nov 2006 Canberra, Australia.
Codon usage analysis of prokaryotic mechanosensation genes
Liu, Guang B., Chen, Rong, Martinac, Boris and Zhao, Kong-Nan. 2006. "Codon usage analysis of prokaryotic mechanosensation genes." Gaeta, Bruno (ed.) Bioinformatics Australia 2006. Sydney, Australia 21 - 22 Nov 2006 Australia.
A metabolite-deficient mutant of Bordetella pertussis that induces secretory IgA and cell-mediated immunity in mice vaccinated by the intranasal route
Mukkur, T. K. S., Cornford-Nairn, Renee A., Rossetti, T., Kershaw, S., Fry, Scott Robert, Xu, Youhong and Daggard, Grant A.. 2005. "A metabolite-deficient mutant of Bordetella pertussis that induces secretory IgA and cell-mediated immunity in mice vaccinated by the intranasal route." Fang, Ferric C. (ed.) 105th American Society for Microbiology: General Meeting. Atlanta, Georgia 05 - 09 Jun 2005 Washington.
Preparation of total RNA from a very small wheat embryo suitable for differential display
Chen, Yihua, Weining, Song and Daggard, Grant. 2003. "Preparation of total RNA from a very small wheat embryo suitable for differential display ." Annals of Applied Biology. 143 (2), pp. 261-264. https://doi.org/10.1111/j.1744-7348.2003.tb00293.x
Targetting AFLP-DNA markers to specific traits and chromosome regions
Campbell, A. W., Daggard, G., Békés, F., Pedler, A., Sutherland, M. W and Appels, R.. 2001. "Targetting AFLP-DNA markers to specific traits and chromosome regions ." Australian Journal of Agricultural Research. 52 (11-12), pp. 1153-1160. https://doi.org/10.1071/ar01028
Enhanced shoot regeneration in nine Australian wheat cultivars by spermidine and water stress treatments
Khanna, Harjeet K. and Daggard, Grant E.. 2001. "Enhanced shoot regeneration in nine Australian wheat cultivars by spermidine and water stress treatments ." Australian Journal of Plant Physiology. 28 (12), pp. 1243-1247. https://doi.org/10.1071/pp01115