Codon usage analysis of prokaryotic mechanosensation genes

Poster

Liu, Guang B., Chen, Rong, Martinac, Boris and Zhao, Kong-Nan. 2006. "Codon usage analysis of prokaryotic mechanosensation genes." Gaeta, Bruno (ed.) Bioinformatics Australia 2006. Sydney, Australia 21 - 22 Nov 2006 Australia.
Paper/Presentation Title

Codon usage analysis of prokaryotic mechanosensation genes

Presentation TypePoster
AuthorsLiu, Guang B. (Author), Chen, Rong (Author), Martinac, Boris (Author) and Zhao, Kong-Nan (Author)
EditorsGaeta, Bruno
Journal or Proceedings TitleBioinformatics Australia 2006 - Connecting Australian Bioinformatics
Year2006
Place of PublicationAustralia
Web Address (URL) of Paperhttp://ba.angis.org.au/
Conference/EventBioinformatics Australia 2006
Event Details
Bioinformatics Australia 2006
Event Date
21 to end of 22 Nov 2006
Event Location
Sydney, Australia
Abstract

[Abstract]: In the present study, we examined GC nucleotide composition, relative synonymous codon usage (RSCU), effective number of codons (ENC), codon adaptation index (CAI) and gene length for 308 prokaryotic mechanosensitive ion channel (MSC) genes from six evolutionary groups: Euryarchaeota, Actinobacteria, Alphaproteobacteria, Betaproteobacteria, Firmicutes, and Gammaproteobacteria. Results showed that 1). a wide variation of overrepresentation of nucleotides exists in the MSC genes; 2). codon usage bias varies considerably among the MSC genes; 3). both nucleotide constraint and gene length play an important role in shaping codon usage of the bacterial MSC genes and 4). synonymous codon usage of prokaryotic MSC genes is phylogenetically conserved. Knowledge of codon usage in prokaryotic MSC genes may benefit for the study of the MSC genes in eukaryotes in which few MSC genes have been identified and functionally analysed.

Keywordscodon usage analysis, prokaryotic mechanosensation genes
ANZSRC Field of Research 2020410399. Environmental biotechnology not elsewhere classified
320603. Medical molecular engineering of nucleic acids and proteins
320699. Medical biotechnology not elsewhere classified
Public Notes

Poster presentation. Abstract only available. No evidence of copyright restrictions on web site.

Byline AffiliationsCentre for Systems Biology
Xi'an Jiaotong University, China
University of Queensland
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