Origin and evolution of the bread wheat D genome

Article

Cavalet-Giorsa, Emile, González-Muñoz, Andrea, Athiyannan, Naveenkumar, Holden, Samuel, Salhi, Adil, Gardener, Catherine, Quiroz-Chávez, Jesús, Rustamova, Samira M., Elkot, Ahmed Fawzy, Patpour, Mehran, Rasheed, Awais, Mao, Long, Lagudah, Evans S., Periyannan, Sambasivam K., Sharon, Amir, Himmelbach, Axel, Reif, Jochen C., Knauft, Manuela, Mascher, Martin, ..., Krattinger, Simon G.. 2024. "Origin and evolution of the bread wheat D genome." Nature. 633, pp. 848-855. https://doi.org/10.1038/s41586-024-07808-z
Article Title

Origin and evolution of the bread wheat D genome

ERA Journal ID17479
Article CategoryArticle
AuthorsCavalet-Giorsa, Emile, González-Muñoz, Andrea, Athiyannan, Naveenkumar, Holden, Samuel, Salhi, Adil, Gardener, Catherine, Quiroz-Chávez, Jesús, Rustamova, Samira M., Elkot, Ahmed Fawzy, Patpour, Mehran, Rasheed, Awais, Mao, Long, Lagudah, Evans S., Periyannan, Sambasivam K., Sharon, Amir, Himmelbach, Axel, Reif, Jochen C., Knauft, Manuela, Mascher, Martin, Stein, Nils, Chayut, Noam, Ghosh, Sreya, Perovic, Dragan, Putra, Alexander, Perera, Ana B., Hu, Chia-Yi, Yu, Guotai, Ahmed, Hanin Ibrahim, Laquai, Konstanze D., Rivera, Luis F., Chen, Renjie, Wang, Yajun, Gao, Xin, Liu, Sanzhen, Raupp, W. John, Olson, Eric L., Lee, Jong-Yeol, Chhuneja, Parveen, Kaur, Satinder, Zhang, Peng, Park, Robert F., Ding, Yi, Liu, Deng-Cai, Li, Wanlong, Nasyrova, Firuza Y., Dvorak, Jan, Abbasi, Mehrdad, Li, Meng, Kumar, Naveen, Meyer, Wilku B., Boshoff, Willem H. P., Steffenson, Brian J., Matny, Oadi, Sharma, Parva K., Tiwari, Vijay K., Grewal, Surbhi, Pozniak, Curtis J., Chawla, Harmeet Singh, Ens, Jennifer, Dunning, Luke T., Kolmer, James A., Lazo, Gerard R., Xu, Steven S., Gu, Yong Q., Xu, Xianyang, Uauy, Cristobal, Abrouk, Michael, Bougouffa, Salim, Brar, Gurcharn S., Wulff, Brande B. H. and Krattinger, Simon G.
Journal TitleNature
Journal Citation633, pp. 848-855
Number of Pages29
Year2024
PublisherNature Publishing Group
Place of PublicationUnited Kingdom
ISSN0028-0836
0090-0028
0300-8746
1476-4687
Digital Object Identifier (DOI)https://doi.org/10.1038/s41586-024-07808-z
Web Address (URL)https://www.nature.com/articles/s41586-024-07808-z
AbstractBread wheat (Triticum aestivum) is a globally dominant crop and major source of calories and proteins for the human diet. Compared with its wild ancestors, modern bread wheat shows lower genetic diversity, caused by polyploidisation, domestication and breeding bottlenecks1,2. Wild wheat relatives represent genetic reservoirs, and harbour diversity and beneficial alleles that have not been incorporated into bread wheat. Here we establish and analyse extensive genome resources for Tausch’s goatgrass (Aegilops tauschii), the donor of the bread wheat D genome. Our analysis of 46 Ae. tauschii genomes enabled us to clone a disease resistance gene and perform haplotype analysis across a complex disease resistance locus, allowing us to discern alleles from paralogous gene copies. We also reveal the complex genetic composition and history of the bread wheat D genome, which involves contributions from genetically and geographically discrete Ae. tauschii subpopulations. Together, our results reveal the complex history of the bread wheat D genome and demonstrate the potential of wild relatives in crop improvement. © The Author(s) 2024.
Contains Sensitive ContentDoes not contain sensitive content
ANZSRC Field of Research 2020300406. Crop and pasture improvement (incl. selection and breeding)
Byline AffiliationsKing Abdullah University of Science and Technology, Saudi Arabia
University of British Columbia, Canada
John Innes Centre, United Kingdom
Ministry of Science and Education of the Republic of Azerbaijan, Azerbaijan
Agricultural Research Center, Egypt
Aarhus University, Denmark
Quaid-i-Azam University, Pakistan
International Maize and Wheat Improvement Centre, China
Chinese Academy of Agricultural Sciences, China
Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australia
School of Agriculture and Environmental Science
Tel Aviv University, Israel
Leibniz Institute of Plant Genetics and Crop Plant Research, Germany
German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, German
Martin Luther University Halle-Wittenberg, Germany
Julius Kuehn-Institute, Germany
Chinese Academy of Sciences, China
Kansas State University, United States
Michigan State University, United States
Rural Development Administration, Korea
Punjab Agricultural University, India
University of Sydney
Sichuan Agricultural Univesity, China
South Dakota State University, United States
Tajik National Academy of Sciences, Tajikistan
University of California Davis, United States
University of the Free State, South Africa
University of Minnesota, United States
University of Maryland, United States
University of Nottingham, United Kingdom
University of Saskatchewan, Canada
University of Manitoba, Canada
University of Sheffield, United Kingdom
U.S. Department of Agriculture-Agricultural Research Service, United States
University of Alberta, Canada
Permalink -

https://research.usq.edu.au/item/z99q1/origin-and-evolution-of-the-bread-wheat-d-genome

Log in to edit

Download files

Published Version
s41586-024-07808-z.pdf
License: CC BY 4.0
File access level: Anyone

  • 10
    total views
  • 0
    total downloads
  • 5
    views this month
  • 0
    downloads this month

Export as

Related outputs

Genome-wide atlas of rust resistance loci in wheat
Tong, Jingyang, Zhao, Cong, Liu, Dan, Jambuthenne, Dilani T., Sun, Mengjing, Dinglasan, Eric, Periyannan, Sambasivam K., Hickey, Lee T. and Hayes, Ben J.. 2024. "Genome-wide atlas of rust resistance loci in wheat." Theoretical and Applied Genetics: international journal of plant breeding research. 137 (8). https://doi.org/10.1007/s00122-024-04689-8
Stem rust of wheat in colonial Australia and the development of the plant pathology profession
Ryley, Malcolm J. and Park, Robert F.. 2024. "Stem rust of wheat in colonial Australia and the development of the plant pathology profession." Historical Records of Australian Science. 35 (2), pp. 83-97. https://doi.org/10.1071/HR23005
Wheat improvement through advances in single nucleotide polymorphism (SNP) detection and genotyping with a special emphasis on rust resistance
Subramaniam, Subramaniam, Kadirvel, Palchamy and Periyannan, Sambasivam. 2024. "Wheat improvement through advances in single nucleotide polymorphism (SNP) detection and genotyping with a special emphasis on rust resistance." Theoretical and Applied Genetics: international journal of plant breeding research. 137 (10). https://doi.org/10.1007/s00122-024-04730-w
Unveiling Genetic Resistance to Crown Rot in Watkins Wheat Landrace Diversity Panel
Garg, Bharat, Rubayet, Md. Tanbir, Muthusamy, Karthikeyan, Subramaniam, Geethanjali, McDonald, Stephen, Balotf, Sadegh, Gardiner, Donald, Percy, Cassy and Periyannan, Sambasivam. 2024. "Unveiling Genetic Resistance to Crown Rot in Watkins Wheat Landrace Diversity Panel." 12th Australasian Soilborne Diseases Symposium (ASDS 2024). Kingscliff, Australia 26 - 30 Aug 2024 Australia.
Unleashing Bacillus species as versatile antagonists: Harnessing the biocontrol potentials of the plant growth-promoting rhizobacteria to combat Macrophomina phaseolina infection in Gloriosa superba
Dhanabalan, Shanmugapriya, Muthusamy, Karthikeyan, Iruthayasamy, Johnson, Kumaresan, Parthiban V., Ravikumar, Caroline, Kandasamy, Rajamani, Natesan, Senthil and Periyannan, Sambasivam. 2024. "Unleashing Bacillus species as versatile antagonists: Harnessing the biocontrol potentials of the plant growth-promoting rhizobacteria to combat Macrophomina phaseolina infection in Gloriosa superba." Microbiological Research. 283. https://doi.org/10.1016/j.micres.2024.127678
Comprehensive analysis of little leaf disease incidence and resistance in eggplant
Muthusamy, Muthusamy, Yogiraj, Gawande Priya, Elaiyabharath, Thiyagarajan, Jesu, Bonipas Antony John, Johnson, Iruthayasamy, Jaffer, Shajith Basha, Dhanabalan, Shanmuga Priya, Boopathi, Narayanan Manikanda, Marimuthu, Subbaiyan, Shobeiri Nejad, Hamid, Adorada, Dante L. and Periyannan, Sambasivam. 2024. "Comprehensive analysis of little leaf disease incidence and resistance in eggplant." BMC Plant Biology. 24, p. 576. https://doi.org/10.1186/s12870-024-05257-4
Sr65: a widely effective gene for stem rust resistance in wheat
Norman, Michael, Chen, Chunhong, Miah, Hanif, Patpour, Mehran, Sørensen, Chris, Hovmøller, Mogens, Forrest, Kerrie, Kumar, Subodh, Prasad, Pramod, Gangwar, Om Prakash, Bhardwaj, Subhash, Bariana, Harbans, Periyannan, Sambasivam and Bansal, Urmil. 2024. "Sr65: a widely effective gene for stem rust resistance in wheat." Theoretical and Applied Genetics: international journal of plant breeding research. 137 (1). https://doi.org/10.1007/s00122-023-04507-7
Editorial: Plant genetic and genomic resources for sustained crop improvement
Rangan, Parimalan, Henry, Robert, Wambugu, Peterson and Periyannan, Sambasivam. 2023. "Editorial: Plant genetic and genomic resources for sustained crop improvement." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1266698
The Keys to Controlling Wheat Rusts: Identification and Deployment of Genetic Resistance
Norman, Michael, Bariana, Harbans, Bansal, Urmil and Periyannan, Sambasivam. 2023. "The Keys to Controlling Wheat Rusts: Identification and Deployment of Genetic Resistance." Phytopathology: International Journal of the American Phytopathological Society. 113 (4), pp. 667-677. https://doi.org/10.1094/PHYTO-02-23-0041-IA
Editorial: Advances in crop resistance breeding using modern genomic tools
Huang, Lin, Li, Yinghui, Chen, Shisheng, Periyannan, Sambasivam and Fahima, Tzion. 2023. "Editorial: Advances in crop resistance breeding using modern genomic tools." Frontiers in Plant Science. 14. https://doi.org/10.3389/fpls.2023.1143689
A pathogen-induced putative NAC transcription factor mediates leaf rust resistance in barley
Chen, Chunhong, Jost, Matthias, Outram, Megan A., Friendship, Dorian, Chen, Jian, Wang, Aihua, Periyannan, Sambasivam, Bartos, Jan, Holusova, Katerina, Dolezel, Jaroslav, Zhang, Peng, Bhatt, Dhara, Singh, Davinder, Lagudah, Evans, Park, Robert F. and Dracatos, Peter M.. 2023. "A pathogen-induced putative NAC transcription factor mediates leaf rust resistance in barley." Nature Communications. 14 (1). https://doi.org/10.1038/s41467-023-41021-2
Phenotypic and genotypic diversity of Puccinia sorghi in Eastern Australia: implications for maize breeding programs
Quade, Aurelie, Park, Robert F., Stodart, Benjamin, Ding, Yi, Zhang, Peng, Thang, Mike, Poudel, Barsha, Vaghefi, Niloofar and Ash, Gavin James. 2023. "Phenotypic and genotypic diversity of Puccinia sorghi in Eastern Australia: implications for maize breeding programs ." PhytoFrontiers. 3 (3), pp. 610-618. https://doi.org/10.1094/PHYTOFR-12-22-0151-R
Detecting Depression Using Single-Channel EEG and Graph Methods
Zhu, Guohun, Qiu, Tong, Ding, Yi, Gao, Shang, Zhao, Nan, Liu, Feng, Zhou, Xujuan and Gururajan, Raj. 2022. "Detecting Depression Using Single-Channel EEG and Graph Methods." Mathematics. 10 (22), pp. 1-10. https://doi.org/10.3390/math10224177
Resistance in maize (Zea mays) to isolates of Puccinia sorghi from Eastern Australia
Quade, Aurelie, Ash, Gavin J., Park, Robert F. and Stodart, Benjamin. 2021. "Resistance in maize (Zea mays) to isolates of Puccinia sorghi from Eastern Australia." Phytopathology: International Journal of the American Phytopathological Society. 111 (10), pp. 1751-1757. https://doi.org/10.1094/PHYTO-11-20-0524-R
Genomic resources in plant breeding for sustainable agriculture
Thudi, Mahendar, Palakurthi, Ramesh, Schnable, James C., Chitikineni, Annapurna, Dreisigacker, Susanne, Mace, Emma, Srivastava, Rakesh K., Satyavathi, C. Tara, Odeny, Damaris, Tiwari, Vijay K., Lam, Hon-Ming, Hong, Yan Bin, Singh, Vikas K., Li, Guowei, Xu, Yunbi, Chen, Xiaoping, Kaila, Sanjay, Nguyen, Henry, Sivasankar, Sobhana, ..., Varshney, Rajeev K.. 2021. "Genomic resources in plant breeding for sustainable agriculture." Journal of Plant Physiology. 257, pp. 1-18. https://doi.org/10.1016/j.jplph.2020.153351
Transposable element populations shed light on the evolutionary history of wheat and the complex co‐evolution of autonomous and non‐autonomous retrotransposons
Wicker, Thomas, Stritt, Christoph, Sotiropoulos, Alexandros G, Poretti, Manuel, Pozniak, Curtis, Walkowiak, Sean, Gundlach, Heidrun and Stein, Nils. 2022. "Transposable element populations shed light on the evolutionary history of wheat and the complex co‐evolution of autonomous and non‐autonomous retrotransposons." Advanced Genetics. 3 (1). https://doi.org/10.1002/ggn2.202100022
Urediniospores of Puccinia sorghi: pre- and post-cold storage requirements
Quade, Aurelie, Park, Robert F., Stodart, Ben J. and Ash, Gavin J.. 2022. "Urediniospores of Puccinia sorghi: pre- and post-cold storage requirements." Canadian Journal of Plant Pathology. 44 (5), pp. 737-743. https://doi.org/10.1080/07060661.2022.2039962
Comparative transcriptome analysis of wheat lines in the field reveals multiple essential biochemical pathways suppressed by obligate pathogens
Poretti, Manuel, Sotiropoulos, Alexandros G., Graf, Johannes, Jung, Esther, Bourras, Salim, Krattinger, Simon G. and Wicker, Thomas. 2021. "Comparative transcriptome analysis of wheat lines in the field reveals multiple essential biochemical pathways suppressed by obligate pathogens." Frontiers in Plant Science. 12. https://doi.org/10.3389/fpls.2021.720462
Phenotypic and Genotypic Variation of Puccinia helianthi in South Africa
Meyer, Wilku B., Boshoff, Willem H. P., Minnaar-Onton, Adré, Young, Anthony, Kong, Gary, Thompson, S., Pretorius, Zacharias A. and Visser, B.. 2021. "Phenotypic and Genotypic Variation of Puccinia helianthi in South Africa ." Plant Disease: an international journal of applied plant pathology. 105 (5), pp. 1482-1489. https://doi.org/10.1094/PDIS-09-20-1903-RE
Stem rust outbreak in Queensland barley
Park, Robert, Cuddy, Will, Snyman, Lisle and Adorada, Dante. 2019. "Stem rust outbreak in Queensland barley." GroundCover.
Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W. and Martin, Anke. 2018. "Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses." Molecular Breeding: new strategies in plant improvement. 38 (7), pp. 1-8. https://doi.org/10.1007/s11032-018-0838-6
A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W., Knight, Noel L. and Martin, Anke. 2018. "A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses." Crop and Pasture Science. 69 (2), pp. 121-130. https://doi.org/10.1071/CP17240
Pentaploid wheat hybrids: applications, characterisation, and challenges
Padmanaban, Sriram, Zhang, Peng, Hare, Ray, Sutherland, Mark and Martin, Anke. 2017. "Pentaploid wheat hybrids: applications, characterisation, and challenges." Frontiers in Plant Science. 8. https://doi.org/10.3389/fpls.2017.00358
Trichothecene profiling and population genetic analysis of Gibberella zeae from barley in North Dakota and Minnesota
Burlakoti, Rishi R., Neate, Stephen M., Adhikari, Tika B., Gyawali, Sanjaya, Salas, Bacilio, Steffenson, Brian J. and Schwarz, Paul B.. 2011. "Trichothecene profiling and population genetic analysis of Gibberella zeae from barley in North Dakota and Minnesota ." Phytopathology: International Journal of the American Phytopathological Society. 101 (6), pp. 687-695. https://doi.org/10.1094/PHYTO-04-10-0101
A novel QTL for Septoria speckled leaf blotch resistance in barley (Hordeum vulgare L.) accession PI 643302 by whole-genome QTL mapping
Yu, G. T., Franckowiak, J. D., Lee, S. H., Horsley, R. D. and Neate, S. M.. 2010. "A novel QTL for Septoria speckled leaf blotch resistance in barley (Hordeum vulgare L.) accession PI 643302 by whole-genome QTL mapping." Genome. 53 (8), pp. 630-636. https://doi.org/10.1139/G10-032
A native QTL for Fusarium head blight resistance in North American barley (Hordeum vulgare L.) independent of height, maturity, and spike type loci
Yu, G. T., Franckowiak, J. D., Neate, S. M., Zhang, B. and Horsley, R. D.. 2010. "A native QTL for Fusarium head blight resistance in North American barley (Hordeum vulgare L.) independent of height, maturity, and spike type loci." Genome. 53 (2), pp. 111-118. https://doi.org/10.1139/G09-091
Graph based interference coordination for relay networks
Wang, Yafeng, Li, Meng and Xiang, Wei. 2012. "Graph based interference coordination for relay networks." Przeglad Elektrotechniczny (Electrical Review). 88 (1B), pp. 88-91.
Resistance gene analogues of wheat: molecular genetic analysis of ESTs
McFadden, H. G., Lehmensiek, A. and Lagudah, E. S.. 2006. "Resistance gene analogues of wheat: molecular genetic analysis of ESTs." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (6), pp. 987-1002. https://doi.org/10.1007/s00122-006-0358-3
Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH
Eberhard, Friederike S., Zhang, Peng, Lehmensiek, Anke, Hare, Ray A., Simpfendorfer, Steven and Sutherland, Mark W.. 2010. "Chromosome composition of an F2 Triticum aestivum × T. turgidum spp. durum cross analysed by DArT markers and MCFISH." Crop and Pasture Science. 61 (8), pp. 619-624. https://doi.org/10.1071/CP10131
Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH
Eberhard, F. S., Zhang, P., Lehmensiek, A., Sutherland, M. W., Hare, R. and Simpfendorfer, S.. 2008. "Chromosome composition in an F2 hexaploid x durum cross analysed by DArT markers and MCFISH." Appels, Rudi, Eastwood, Russell, Lagudah, Evans, Mackay, Michael, McIntyre, Lynne, Sharp, Peter and Langridge, Peter (ed.) 11th International Wheat Genetics Sympoium (IWGS 2008). Brisbane, Australia 24 - 29 Aug 2008 Sydney, Australia.
Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici
Park, Robert F., Ash, Gavin J. and Rees, Robert G.. 1992. "Effects of temperature on the response of some Australian wheat cultivars to Puccinia striiformis f. sp. tritici." Mycological Research. 96 (3), pp. 166-170. https://doi.org/10.1016/S0953-7562(09)80961-1