Centre for Crop Health (Research)


Latest research outputs

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Phytophthora cinnamomi exhibits phenotypic plasticity in response to cold temperatures
Khaliq, Ihsanul, Hardy, Giles E. St. J. and Burgess, Treena I.. 2020. "Phytophthora cinnamomi exhibits phenotypic plasticity in response to cold temperatures." Mycological Progress: international journal of fungal sciences. 19, pp. 405-415. https://doi.org/10.1007/s11557-020-01578-4

Article

Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae
Tanaka, Eiji, Shrestha, Bhushan and Shivas, Roger G.. 2020. "Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae." Mycologia. 112 (3), pp. 649-660. https://doi.org/10.1080/00275514.2020.1745524

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Phomopsis husk rot of macadamia in Australia and South Africa caused by novel Diaporthe species
Wrona, Christopher J., Mohankumar, Vheena, Schoeman, Maritha H., Tan, Yu P., Shivas, Roger G.S., Jeff-Ego, Olumide S. and Akinsanmi, Olufemi A.. 2020. "Phomopsis husk rot of macadamia in Australia and South Africa caused by novel Diaporthe species." Plant Pathology. 69 (5), pp. 911-921. https://doi.org/10.1111/ppa.13170

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Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen Spongospora subterranea
Balotf, Sadegh, Wilson, R., Tegg, Robert S., Nichols, David S. and Wilson, Calum R.. 2020. "Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen Spongospora subterranea." Molecules. 25 (14). https://doi.org/10.3390/molecules25143109

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Colonization of crop and pasture species with vesicular–arbuscular mycorrhizal fungi and a negative correlation with root infection by Bipolaris sorokiniana
Thompson, J. P. and Wildermuth, G. B.. 1989. "Colonization of crop and pasture species with vesicular–arbuscular mycorrhizal fungi and a negative correlation with root infection by Bipolaris sorokiniana." Canadian Journal of Botany. 67 (3), pp. 687-693. https://doi.org/10.1139/b89-092

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Plant, invertebrate and pathogen interactions in Kosciuszko National Park
McDougall, Keith L., Wright, Genevieve T., Burgess, Treena I., Farrow, Roger, Khaliq, Ihsan, Laurence, Mathew H., Wallenius, Thomas and Liew, Edward C. Y.. 2018. "Plant, invertebrate and pathogen interactions in Kosciuszko National Park." Linnean Society of New South Wales. 140, pp. 295-312.

Article

eDNA from roots: a robust tool for determining Phytophthora communities in natural ecosystems
Khaliq, Ihsanul, Hardy, Giles E. St. J., White, Diane and Burgess, Treena I.. 2018. "eDNA from roots: a robust tool for determining Phytophthora communities in natural ecosystems." FEMS Microbiology Ecology. 94 (5). https://doi.org/10.1093/femsec/fiy048

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Occurrence and diversity of entomopathogenic fungi (Beauveria spp. and Metarhizium spp.) in Australian vineyard soils
Korosi, Gyongyver A., Wilson, Bree A. L., Powell, Kevin S., Ash, Gavin J., Reineke, Annette and Savocchia, Sandra. 2019. "Occurrence and diversity of entomopathogenic fungi (Beauveria spp. and Metarhizium spp.) in Australian vineyard soils." Journal of Invertebrate Pathology. 164, pp. 69-77. https://doi.org/10.1016/j.jip.2019.05.002

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Genomic Regions Associated with Virulence in Pyrenophora teres f. teres Identified by Genome-Wide Association Analysis and Bi-parental Mapping
Martin, Anke, Moolhuijzen, Paula, Tao, Yongfu, McIlroy, Judy, Ellwood, Simon, Fowler, Ryan A., Platz, Gregory J., Kilian, Andrzej and Snyman, Lisle. 2020. "Genomic Regions Associated with Virulence in Pyrenophora teres f. teres Identified by Genome-Wide Association Analysis and Bi-parental Mapping." Phytopathology: International Journal of the American Phytopathological Society. 110 (4), pp. 881-891. https://doi.org/10.1094/PHYTO-10-19-0372-R

Article

Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects
Dehigaspitiya, Prabuddha, Milham, Paul, Ash, Gavin J., Arun-Chinnappa, Kiruba, Gamage, Dananjali, Martin, Anke, Nagasaka, Seiji and Seneweera, Saman. 2019. "Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects." Planta: an international journal of plant biology. 250, pp. 1033-1050. https://doi.org/10.1007/s00425-019-03223-1

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Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers
Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, Anke. 2019. "Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by Diversity Arrays Technology markers." Plant Pathology. 68 (7), pp. 1331-1336. https://doi.org/10.1111/ppa.13035

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Pathogenicity and copper tolerance in Australian Xanthomonas species associated with bacterial leaf spot
Roach, R., Mann, R., Gambley, C. G., Shivas, R. G., Chapman, T. and Rodoni, B.. 2020. "Pathogenicity and copper tolerance in Australian Xanthomonas species associated with bacterial leaf spot." Crop Protection. 127, pp. 1-11. https://doi.org/10.1016/j.cropro.2019.104923

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Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera
Oeyen, Jan Philip, Baa-Puyoulet, Patrice, Benoit, Joshua B., Beukeboom, Leo W., Bornberg-Bauer, Erich, Buttstedt, Anja, Calevro, Federica, Cash, Elizabeth I., Chao, Hsu, Charles, Hubert, Chen, Mei-Ju May, Childers, Christopher, Cridge, Andrew G., Dearden, Peter, Dinh, Huyen, Doddapaneni, Harsha V., Dolan, Amanda, Donath, Alexander, Dowling, Daniel, ..., Niehuis, O.. 2020. "Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera." Genome Biology and Evolution. 12 (7), pp. 1099-1188. https://doi.org/10.1093/gbe/evaa106

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New smut-specific primers for multilocus genotyping and phylogenetics of Ustilaginaceae
Kruse, Julia, Mishra, Bagdevi, Choi, Young-Joon, Sharma, Rahul and Thines, Marco. 2017. "New smut-specific primers for multilocus genotyping and phylogenetics of Ustilaginaceae." Mycological Progress: international journal of fungal sciences. 16 (9), pp. 917-925. https://doi.org/10.1007/s11557-017-1328-7

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Revision of Plasmopara (Oomycota, Peronosporales) parasitic to Impatiens
Gorg, Marlena, Ploch, Sebastian, Kruse, Julia, Kummer, Volker, Runge, Fabian, Choi, Young-Joon and Thines, Marco. 2017. "Revision of Plasmopara (Oomycota, Peronosporales) parasitic to Impatiens." Mycological Progress: international journal of fungal sciences. 16 (8), pp. 791-799. https://doi.org/10.1007%2Fs11557-017-1316-y

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Hyaloperonospora erucae sp. nov. (Peronosporaceae; Oomycota), the downy mildew pathogen of arugula (Eruca sativa)
Choi, Young-Joon, Kruse, Julia and Thines, Marco. 2018. "Hyaloperonospora erucae sp. nov. (Peronosporaceae; Oomycota), the downy mildew pathogen of arugula (Eruca sativa)." European Journal of Plant Pathology. 151 (2), pp. 549-555. https://doi.org/10.1007/s10658-017-1389-0

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New smut-specific primers for the ITS barcoding of Ustilaginomycotina
Kruse, Julia, Choi, Young-Joon and Thines, Marco. 2017. "New smut-specific primers for the ITS barcoding of Ustilaginomycotina." Mycological Progress: international journal of fungal sciences. 16 (3), pp. 213-221. https://doi.org/10.1007%2Fs11557-016-1265-x

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Diversity of Moesziomyces (Ustilaginales, Ustilaginomycotina) on Echinochloa and Leersia (Poaceae)
Li, Ying-Ming, Shivas, Roger G., Li, Bao-Ju and Cai, Lei. 2019. "Diversity of Moesziomyces (Ustilaginales, Ustilaginomycotina) on Echinochloa and Leersia (Poaceae)." MycoKeys. 52, pp. 1-16. https://doi.org/10.3897/mycokeys.52.30461

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Fungal planet description sheets: 868–950
Crous, P. W., Carnegie, A. J., Wingfield, M. J., Sharma, R., Mughini, G., Noordeloos, M. E., Santini, A., Shouche, Y. S., Bezerra, J. D. P., Dima, B., Guarnaccia, V., Imrefi, I., Jurjevic, Z., Knapp, D. G., Kovacs, G. M., Magista, D., Perrone, G., Rama, T., Rebriev, Y. A., ..., Groenewald, J. Z.. 2019. "Fungal planet description sheets: 868–950." Persoonia. 42, pp. 291-473. https://doi.org/10.3767/persoonia.2019.42.11

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Elevated temperature reduces survival of peak populations of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol
Thompson, J. P., Rostad, H. E., Macdonald, B. J. and Whish, J. P. M.. 2018. "Elevated temperature reduces survival of peak populations of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol." Biology and Fertility of Soils. 54 (2), pp. 243-257. https://doi.org/10.1007/s00374-017-1256-3

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Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited
Tan, Yu Pei, Shivas, Roger G., Marney, Thomas S., Edwards, Jacqueline, Dearnaley, John, Jami, Fahimeh and Burgess, Treena I.. 2019. "Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited." Australasian Plant Pathology. 48 (1), pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7

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Chronic effects and horizontal transmission of Metarhizium anisopliae strain QS155 infection in the sweet potato weevil, Cylas formicarius (Coleoptera: Brentidae)
Dotaona, Ronnie, Wilson, Bree A. L., Stevens, Mark M., Holloway, Joanne and Ash, Gavin J.. 2017. "Chronic effects and horizontal transmission of Metarhizium anisopliae strain QS155 infection in the sweet potato weevil, Cylas formicarius (Coleoptera: Brentidae)." Biological Control. 114, pp. 24-29. https://doi.org/10.1016/j.biocontrol.2017.07.008

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Confirmation of Peronospora agrimoniae as a distinct species
Petrzelova, Irena, Choi, Young-Joon, Jemelkova, Michaela, Dolezalova, Ivana, Kruse, Julia, Thines, Marco and Kitner, Miloslav. 2017. "Confirmation of Peronospora agrimoniae as a distinct species." European Journal of Plant Pathology. 147 (4), pp. 887-896. https://doi.org/10.1007/s10658-016-1058-8

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The presumably North American species Plasmopara wilsonii is present in Germany on the ornamental plant Geranium phaeum
Kruse, Julia, Thines, Marco and Choi, Young-Joon. 2016. "The presumably North American species Plasmopara wilsonii is present in Germany on the ornamental plant Geranium phaeum." European Journal of Plant Pathology. 145 (4), pp. 999-1005. https://doi.org/10.1007/s10658-016-0885-y

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Biodiscovery and the Queensland Plant Pathology Herbarium
Shivas, Roger G., Beasley, Dean R., Bransgrove, Kaylene, Tan, Yu Pei and Bulow, Geoff. 2019. "Biodiscovery and the Queensland Plant Pathology Herbarium." Microbiology Australia. 40 (3), pp. 134-137. https://doi.org/10.1071/MA19036

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One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019)
Jayawardena, Ruvishika S., Hyde, Kevin D., Jeewon, Rajesh, Ghobad-Nejhad, Masoomeh, Wanasinghe, Dhanushka N., Liu, NingGuo, Phillips, Alan J. L., Oliveira-Filho, Jose Ribamar C., da Silva, Gladstone A., Gibertoni, Tatiana B., Abeywikrama, P., Carris, L. M., Chethana, K. W. T., Dissanayake, A. J., Hongsanan, S., Jayasiri, S. C., McTaggart, A. R., Perera, R. H., Phutthacharoen, K., ..., Kang, Ji-Chuan. 2019. "One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50 (2019)." Fungal Diversity. 94 (1), pp. 41-129. https://doi.org/10.1007/s13225-019-00418-5

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Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia
Thompson, S. M., Tan, Y. P., Neate, S. M., Grams, R. M., Shivas, R. G., Lindbeck, K. and Aitken, E. A. B.. 2018. "Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia." European Journal of Plant Pathology. 152 (3), pp. 823-831. https://doi.org/10.1007/s10658-018-1515-7

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Investigating hybridisation between the forms of Pyrenophora teres based on Australian barley field experiments and cultural collections
Poudel, B., McLean, M. S., Platz, G. J., McIlroy, J. A., Sutherland, M. W. and Martin, A.. 2019. "Investigating hybridisation between the forms of Pyrenophora teres based on Australian barley field experiments and cultural collections." European Journal of Plant Pathology. 153 (2), pp. 465-473. https://doi.org/10.1007/s10658-018-1574-9

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Effect of elevated carbon dioxide on plant biomass and grain protein concentration differs across bread, durum and synthetic hexaploid wheat genotypes
Thompson, Michael, Gamage, Dananjali, Ratnasekera, Disna, Perera, Anton, Martin, Anke and Seneweera, Saman. 2019. "Effect of elevated carbon dioxide on plant biomass and grain protein concentration differs across bread, durum and synthetic hexaploid wheat genotypes." Journal of Cereal Science. 87, pp. 103-110. https://doi.org/10.1016/j.jcs.2019.03.007

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Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli
Roach, R., Mann, R., Gambley, C. G., Chapman, T., Shivas, R. G. and Rodoni, B.. 2019. "Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli." BMC Genomics. 20 (1 - 310), pp. 1-22. https://doi.org/10.1186/s12864-019-5600-x

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Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period
Page, Kathryn L., Dang, Yash P., Dalal, Ram C., Reeves, Steven, Thomas, Greg, Wang, Weijin and Thompson, John P.. 2019. "Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period." Soil and Tillage Research. 194, pp. 1-8. https://doi.org/10.1016/j.still.2019.104319

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Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by Normalised Difference Vegetation Index (NDVI) is predictive of grain yield
Robinson, Neil A., Sheedy, Jason G., Macdonald, Bethany J., Owen, Kirsty J. and Thompson, John P.. 2019. "Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by Normalised Difference Vegetation Index (NDVI) is predictive of grain yield." Annals of Applied Biology. 174 (3), pp. 388-401. https://doi.org/10.1111/aab.12504

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Asexual and sexual morphs of Moesziomyces revisited
Kruse, Julia, Doehlemann, Gunther, Kemen, Eric and Thines, Marco. 2017. "Asexual and sexual morphs of Moesziomyces revisited." IMA Fungus: the global mycological journal. 8 (1), pp. 117-129. https://doi.org/10.5598/imafungus.2017.08.01.09

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Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present
Dotaona, Ronnie, Wilson, Bree A. L., Ash, Gavin J., Holloway, Joanne and Stevens, Mark M.. 2017. "Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present." Journal of Invertebrate Pathology. 148, pp. 67-72. https://doi.org/10.1016/j.jip.2017.05.010

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(2507) Proposal to reject the name Ramularia gibba (Ustilaginomycotina: Entylomatales)
Kruse, Julia and Thines, Marco. 2017. "(2507) Proposal to reject the name Ramularia gibba (Ustilaginomycotina: Entylomatales)." Taxon: international journal of plant taxonomy, phylogeny and evolution. 66 (2), pp. 515-516. https://doi.org/10.12705/662.19

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Effects of elevated carbon dioxide on photosynthesis and carbon partitioning: a perspective on root sugar sensing and hormonal crosstalk
Thompson, Michael, Gamage, Dananjali, Hirotsu, Naoki, Martin, Anke and Seneweera, Saman. 2017. "Effects of elevated carbon dioxide on photosynthesis and carbon partitioning: a perspective on root sugar sensing and hormonal crosstalk." Frontiers in Physiology. 8, pp. 1-13. https://doi.org/10.3389/fphys.2017.00578

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Ustilago species causing leaf-stripe smut revisited
Kruse, Julia, Dietrich, Wolfgang, Zimmermann, Horst, Klenke, Friedemann, Richter, Udo, Richter, Heidrun and Thines, Marco. 2018. "Ustilago species causing leaf-stripe smut revisited." IMA Fungus: the global mycological journal. 9 (1), pp. 49-73. https://doi.org/10.5598/imafungus.2018.09.01.05

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Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus
Kruse, J., Piatek, M., Lutz, M. and Thines, M.. 2018. "Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus." Persoonia. 41, pp. 175-201. https://doi.org/10.3767/persoonia.2018.41.09

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Survival of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol is influenced by rate of progressive soil desiccation
Thompson, J. P., Rostad, H. E. and Whish, J. P. M.. 2017. "Survival of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol is influenced by rate of progressive soil desiccation." Annals of Applied Biology. 170 (1), pp. 78-88. https://doi.org/10.1111/aab.12316

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The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae
Riess, Kai, Schon, Max E., Ziegler, Rebekka, Lutz, Matthias, Shivas, Roger G., Piatek, Marcin and Garnica, Sigisfredo. 2019. "The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae." Organisms Diversity and Evolution. 19 (1), pp. 13-30. https://doi.org/10.1007/s13127-018-0384-4

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