Centre for Crop Health (Research)


Latest research outputs

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Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia
Thompson, S. M., Tan, Y. P., Neate, S. M., Grams, R. M., Shivas, R. G., Lindbeck, K. and Aitken, E. A. B.. 2018. "Diaporthe novem isolated from sunflower (Helianthus annuus) and other crop and weed hosts in Australia." European Journal of Plant Pathology. 152 (3), pp. 823-831. https://doi.org/10.1007/s10658-018-1515-7

Article

Investigating hybridisation between the forms of Pyrenophora teres based on Australian barley field experiments and cultural collections
Poudel, B., McLean, M. S., Platz, G. J., McIlroy, J. A., Sutherland, M. W. and Martin, A.. 2019. "Investigating hybridisation between the forms of Pyrenophora teres based on Australian barley field experiments and cultural collections." European Journal of Plant Pathology. 153 (2), pp. 465-473. https://doi.org/10.1007/s10658-018-1574-9

Article

Effect of elevated carbon dioxide on plant biomass and grain protein concentration differs across bread, durum and synthetic hexaploid wheat genotypes
Thompson, Michael, Gamage, Dananjali, Ratnasekera, Disna, Perera, Anton, Martin, Anke and Seneweera, Saman. 2019. "Effect of elevated carbon dioxide on plant biomass and grain protein concentration differs across bread, durum and synthetic hexaploid wheat genotypes." Journal of Cereal Science. 87, pp. 103-110. https://doi.org/10.1016/j.jcs.2019.03.007

Article

Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli
Roach, R., Mann, R., Gambley, C. G., Chapman, T., Shivas, R. G. and Rodoni, B.. 2019. "Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli." BMC Genomics. 20 (1 - 310), pp. 1-22. https://doi.org/10.1186/s12864-019-5600-x

Article

Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period
Page, Kathryn L., Dang, Yash P., Dalal, Ram C., Reeves, Steven, Thomas, Greg, Wang, Weijin and Thompson, John P.. 2019. "Changes in soil water storage with no-tillage and crop residue retention on a Vertisol: impact on productivity and profitability over a 50 year period." Soil and Tillage Research. 194, pp. 1-8. https://doi.org/10.1016/j.still.2019.104319

Article

Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by Normalised Difference Vegetation Index (NDVI) is predictive of grain yield
Robinson, Neil A., Sheedy, Jason G., Macdonald, Bethany J., Owen, Kirsty J. and Thompson, John P.. 2019. "Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by Normalised Difference Vegetation Index (NDVI) is predictive of grain yield." Annals of Applied Biology. 174 (3), pp. 388-401. https://doi.org/10.1111/aab.12504

Article

Asexual and sexual morphs of Moesziomyces revisited
Kruse, Julia, Doehlemann, Gunther, Kemen, Eric and Thines, Marco. 2017. "Asexual and sexual morphs of Moesziomyces revisited." IMA Fungus: the global mycological journal. 8 (1), pp. 117-129. https://doi.org/10.5598/imafungus.2017.08.01.09

Article

Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present
Dotaona, Ronnie, Wilson, Bree A. L., Ash, Gavin J., Holloway, Joanne and Stevens, Mark M.. 2017. "Sweetpotato weevil, Cylas formicarius (Fab.)(Coleoptera: Brentidae) avoids its host plant when a virulent Metarhizium anisopliae isolate is present." Journal of Invertebrate Pathology. 148, pp. 67-72. https://doi.org/10.1016/j.jip.2017.05.010

Article

(2507) Proposal to reject the name Ramularia gibba (Ustilaginomycotina: Entylomatales)
Kruse, Julia and Thines, Marco. 2017. "(2507) Proposal to reject the name Ramularia gibba (Ustilaginomycotina: Entylomatales)." Taxon: international journal of plant taxonomy, phylogeny and evolution. 66 (2), pp. 515-516. https://doi.org/10.12705/662.19

Article

Effects of elevated carbon dioxide on photosynthesis and carbon partitioning: a perspective on root sugar sensing and hormonal crosstalk
Thompson, Michael, Gamage, Dananjali, Hirotsu, Naoki, Martin, Anke and Seneweera, Saman. 2017. "Effects of elevated carbon dioxide on photosynthesis and carbon partitioning: a perspective on root sugar sensing and hormonal crosstalk." Frontiers in Physiology. 8, pp. 1-13. https://doi.org/10.3389/fphys.2017.00578

Article

Ustilago species causing leaf-stripe smut revisited
Kruse, Julia, Dietrich, Wolfgang, Zimmermann, Horst, Klenke, Friedemann, Richter, Udo, Richter, Heidrun and Thines, Marco. 2018. "Ustilago species causing leaf-stripe smut revisited." IMA Fungus: the global mycological journal. 9 (1), pp. 49-73. https://doi.org/10.5598/imafungus.2018.09.01.05

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Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus
Kruse, J., Piatek, M., Lutz, M. and Thines, M.. 2018. "Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus." Persoonia. 41, pp. 175-201. https://doi.org/10.3767/persoonia.2018.41.09

Article

Survival of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol is influenced by rate of progressive soil desiccation
Thompson, J. P., Rostad, H. E. and Whish, J. P. M.. 2017. "Survival of root-lesion nematodes (Pratylenchus thornei) after wheat growth in a vertisol is influenced by rate of progressive soil desiccation." Annals of Applied Biology. 170 (1), pp. 78-88. https://doi.org/10.1111/aab.12316

Article

The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae
Riess, Kai, Schon, Max E., Ziegler, Rebekka, Lutz, Matthias, Shivas, Roger G., Piatek, Marcin and Garnica, Sigisfredo. 2019. "The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae." Organisms Diversity and Evolution. 19 (1), pp. 13-30. https://doi.org/10.1007/s13127-018-0384-4

Article

An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres
El-Mor, Iman, Fowler, Ryan, Platz, Greg, Sutherland, Mark and Martin, Anke. 2018. "An improved detached-leaf assay for phenotyping net blotch of barley caused by Pyrenophora teres." Plant Disease: an international journal of applied plant pathology. 102 (4), pp. 760-763. https://doi.org/10.1094/PDIS-07-17-0980-RE

Article

Linear modelling of soil temperature effects on root lesion nematode population densities in R [Blog post]
Sparks, Adam H. and Thompson, John P.. 2018. "Linear modelling of soil temperature effects on root lesion nematode population densities in R [Blog post]." Open Plant Pathology Notes. February 2018, pp. 1-24. https://doi.org/10.5281/zenodo.1173391

Letter

The first smut fungus, Thecaphora anthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae)
Kruse, Julia, Kummer, Volker, Shivas, Roger G. and Thines, Marco. 2018. "The first smut fungus, Thecaphora anthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae)." MycoKeys. 41, pp. 39-50. https://doi.org/10.3897/mycokeys.41.28454

Article

Identification and mapping of net form of net blotch resistance in South African barley
Martin, Anke, Platz, Gregory J., de Klerk, Daniel, Fowler, Ryan A., Smit, Francois, Potgieter, Francois G. and Prins, Renee. 2018. "Identification and mapping of net form of net blotch resistance in South African barley." Molecular Breeding: new strategies in plant improvement. 38 (5), pp. 1-10. https://doi.org/10.1007/s11032-018-0814-1

Article

Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions
Syme, Robert A., Martin, Anke, Wyatt, Nathan A., Lawrence, Julie A., Muria-Gonzalez, Mariano J., Friesen, Timothy L. and Ellwood, Simon R.. 2018. "Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions." Frontiers in Genetics. 9, pp. 1-15. https://doi.org/10.3389/fgene.2018.00130

Article

A chromosome‐scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew
Müller, Marion C., Praz, Coraline R., Sotiropoulos, Alexandros G., Menardo, Fabrizio, Kunz, Lukas, Schudel, Seraina, Oberhänsli, Simone, Poretti, Manuel, Wehrli, Andreas and Bourras, Salim. 2019. "A chromosome‐scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew." New Phytologist. 221 (4), pp. 2176-2189. https://doi.org/10.1111/nph.15529

Article

Current status of the Botryosphaeriaceae in Australia
Burgess, Treena I., Tan, Yu Pei, Garnas, Jeff, Edwards, Jacqueline, Scarlett, Kelly A., Shuttleworth, Lucas A., Daniel, Rosalie, Dann, Elizabeth K., Parkinson, Louisamarie E., Dinh, Quang, Shivas, Roger G. and Jami, Fahimeh. 2019. "Current status of the Botryosphaeriaceae in Australia." Australasian Plant Pathology. 48 (1), pp. 35-44. https://doi.org/10.1007/s13313-018-0577-5

Article

Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W. and Martin, Anke. 2018. "Association between presence of Triticum timopheevii introgression and D-genome retention in hexaploid/tetraploid wheat crosses." Molecular Breeding: new strategies in plant improvement. 38 (7), pp. 1-8. https://doi.org/10.1007/s11032-018-0838-6

Article

A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses
Padmanaban, Sriram, Zhang, Peng, Sutherland, Mark W., Knight, Noel L. and Martin, Anke. 2018. "A cytological and molecular analysis of D-genome chromosome retention following F2–F6 generations of hexaploidxtetraploid wheat crosses." Crop and Pasture Science. 69 (2), pp. 121-130. https://doi.org/10.1071/CP17240

Article

Fungal planet description sheets: 716-784
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. St. J., Gene, J., Guarro, J., Baseia, I. G., Garcia, D., Gusmao, L. F. P., Souza-Motta, C. M., Thangavel, R., Adamcik, S., Barili, A., Barnes, C. W., Bezerra, J. D. P., Bordallo, J. J., Cano-Lira, J. F., de Oliveira, R. J. V., Ercole, E., ..., Groenewald, J. Z.. 2018. "Fungal planet description sheets: 716-784." Persoonia. 40, pp. 240-393. https://doi.org/10.3767/persoonia.2018.40.10

Article

Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia
Kiss, Levente, Kovacs, Gabor M., Boka, Karoly, Bohar, Gyula, Boharne, Krisztina Varga, Nemeth, Mark Z., Takamatsu, Susumu, Shin, Hyeon-Dong, Hayova, Vera, Nischwitz, Claudia, Seier, Marion K., Evans, Harry C., Cannon, Paul F., Ash, Gavin James, Shivas, Roger G. and Muller-Scharer, Heinz. 2018. "Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia." Scientific Reports. 8, pp. 1-14. https://doi.org/10.1038/s41598-018-29102-5

Article

First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia
Thompson, S. M., Grams, R. A., Neate, S. M., Shivas, R.G., Ryley, M. J, Tan, Y. P., Aitken, E. A. B., Wright, G. C and O’Connor, D. J.. 2018. "First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia." Plant Disease: an international journal of applied plant pathology. 102 (7), p. 1459. https://doi.org/10.1094/PDIS-12-17-1930-PDN

Notes or commentaries

Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium
Tan, Yu Pei, Crous, Pedro W. and Shivas, Roger G.. 2018. "Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium." MycoKeys. 35, pp. 1-25. https://doi.org/10.3897/mycokeys.35.25665

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Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia
Doungsa-ard, C., McTaggart, A. R., Geering, A. D. W. and Shivas, R. G.. 2018. "Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia." Persoonia. 40, pp. 221-238. https://doi.org/10.3767/persoonia.2018.40.09

Article

A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa
McTaggart, Alistair R., Beasley, Dean R., Wingfield, Michael J., Wood, Alan R., Pretorius, Zakkie K., Drenth, Andre, Shivas, Roger G. and Roux, Jolanda. 2017. "A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa." MycoKeys. 26, pp. 77-83. https://doi.org/10.3897/mycokeys.26.14602

Article

Pathogenicity of nectriaceous fungi on avocado in Australia
Parkinson, Louisamarie E., Shivas, Roger G. and Dann, Elizabeth K.. 2017. "Pathogenicity of nectriaceous fungi on avocado in Australia." Phytopathology: International Journal of the American Phytopathological Society. 107 (12), pp. 1479-1485. https://doi.org/10.1094/PHYTO-03-17-0084-R

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First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York
Hay, F. S., Maloney, E., Vaghefi, N., Shivas, R. G and Pethybridge, S. J. 2017. "First report of cercospora blight of asparagus officinalis caused by cercospora asparagi in New York." Plant Disease: an international journal of applied plant pathology. 101 (11), pp. 1953-1953. https://doi.org/10.1094/PDIS-05-17-0648-PDN

Article

Predicting the slow decline of root lesion nematodes (Pratylenchus thornei) during host-free fallow to improve farm management
Whish, J. P. M., Thompson, J. P., Clewett, T. G., Wood, J. and Rostad, H. E.. 2017. "Predicting the slow decline of root lesion nematodes (Pratylenchus thornei) during host-free fallow to improve farm management." European Journal of Agronomy. 91, pp. 44-53. https://doi.org/10.1016/j.eja.2017.09.012

Article

Survival of root-lesion nematode Pratylenchus neglectus during progressive soil desiccation after growth of wheat in a vertisol
Thompson, J. P., Rostad, H. E. and Whish, J. P. M.. 2017. "Survival of root-lesion nematode Pratylenchus neglectus during progressive soil desiccation after growth of wheat in a vertisol." Biology and Fertility of Soils. 53 (3), pp. 357-366. https://doi.org/10.1007/s00374-017-1184-2

Article

Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia
Giblin, F. R., Tan, Y. P., Mitchell, R., Coates, L. M., Irwin, J. A. G. and Shivas, R.G.. 2018. "Colletotrichum species associated with pre-and post-harvest diseases of avocado and mango in eastern Australia." Australasian Plant Pathology. 47 (3), pp. 269-276. https://doi.org/10.1007/s13313-018-0553-0

Article

Rare Pyrenophora teres hybridization events revealed by development of sequence-specific PCR markers
Poudel, Barsha, Ellwood, Simon R., Testa, Alison C., McLean, Mark, Sutherland, Mark and Martin, Anke. 2017. "Rare Pyrenophora teres hybridization events revealed by development of sequence-specific PCR markers." Phytopathology: International Journal of the American Phytopathological Society. 107 (7), pp. 878-884. https://doi.org/10.1094/PHYTO-11-16-0396-R

Article

Pentaploid wheat hybrids: applications, characterisation, and challenges
Padmanaban, Sriram, Zhang, Peng, Hare, Ray, Sutherland, Mark and Martin, Anke. 2017. "Pentaploid wheat hybrids: applications, characterisation, and challenges." Frontiers in Plant Science. 8. https://doi.org/10.3389/fpls.2017.00358

Article

Genome inheritance in populations derived from hexaploid/ tetraploid and tetraploid/hexaploid wheat crosses
Padmanaban, Sriram, Sutherland, Mark W., Knight, Noel L. and Martin, Anke. 2017. "Genome inheritance in populations derived from hexaploid/ tetraploid and tetraploid/hexaploid wheat crosses." Molecular Breeding: new strategies in plant improvement. 37 (4), pp. 37-48. https://doi.org/10.1007/s11032-017-0647-3

Article

Genome-wide association study of spot form of net blotch resistance in the upper Midwest barley breeding programs
Burlakoti, R. R., Gyawali, S., Chao, S., Smith, K. P., Horsley, R. D., Cooper, B., Muehlbauer, G. J. and Neate, S. M.. 2017. "Genome-wide association study of spot form of net blotch resistance in the upper Midwest barley breeding programs." Phytopathology: International Journal of the American Phytopathological Society. 107 (1), pp. 100-108. https://doi.org/10.1094/PHYTO-03-16-0136-R

Article

PREDICTA®B update and new tests for 2018
McKay, Alan, Simpfendorfer, Steven, Gupta, Vadakattu, Bithell, Sean, Moore, Kevin, Daniel, Richard, Percy, Cassy, White, Jo, Sparks, Adam and Hollaway, Grant. 2018. "PREDICTA®B update and new tests for 2018." GRDC Update Papers.

Article

Identification of Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli crops in eastern Australia
Roach, R., Mann, R., Gambley, C. G., Shivas, R. G. and Rodoni, B.. 2018. "Identification of Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli crops in eastern Australia." European Journal of Plant Pathology. 150 (3), pp. 595-608. https://doi.org/10.1007/s10658-017-1303-9

Article