3104. Evolutionary biology
| Title | 3104. Evolutionary biology |
|---|---|
| Parent | 31. Biological Sciences |
Latest research outputs
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A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material
Poretti, Manuel, Praz, Coraline R, Sotiropoulos, Alexandros G. and Wicker, Thomas. 2023. "A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material." Plant Direct. 7 (3), p. e484. https://doi.org/10.1002/pld3.484Article
The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen
Kunz, Lukas, Sotiropoulos, Alexandros G., Graf, Johannes, Razavi, Mohammad, Keller, Beat and Müller, Marion C.. 2023. "The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen." BMC Biology. 21 (1), p. 29. https://doi.org/10.1186/s12915-023-01513-5Article
Mutagenesis of wheat powdery mildew reveals a single gene controlling both NLR and tandem kinase-mediated immunity
Bernasconi, Zoe, Stirnemann, Ursin, Heuberger, Matthias, Sotiropoulos, Alexandros, Graf, Johannes, Wicker, Thomas, Keller, Beat and Sánchez-Martín, Javier. 2023. "Mutagenesis of wheat powdery mildew reveals a single gene controlling both NLR and tandem kinase-mediated immunity." Molecular Plant-Microbe Interactions. https://doi.org/10.1094/MPMI-09-23-0136-FIArticle
Fungal diversity notes 1387–1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa
Boonmee, Saranyaphat, Wanasinghe, Dhanushka N., Calabon, Mark S., Huanraluek, Naruemon, Chandrasiri, Sajini K. U., Jones, Gareth E. B., Rossi, Walter, Leonardi, Marco, Singh, Sanjay K., Rana, Shiwali, Singh, Paras N., Maurya, Deepak K., Lagashetti, Ajay C., Choudhary, Deepika, Dai, Yu‑Cheng, Zhao, Chang‑Lin, Mu, Yan‑Hong, Yuan, Hai‑Sheng, He, Shuang‑Hui, ..., Hyde, Kevin D.. 2021. "Fungal diversity notes 1387–1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa." Fungal Diversity. 111 (1), pp. 1-335. https://doi.org/10.1007/s13225-021-00489-3Article
A fictional field case study to understand the genetic basis of host-fungal pathogen interactions using the wheat powdery mildew-wheat pathosystem
Sotiropoulos, Alexandros G., Sánchez-Martín, Javier, Widrig, Victoria, Isaksson, Jonatan, Bernasconi, Zoe, Koller, Teresa, Bearth, Giulia, Herren, Gerhard, Wicker, Thomas and Keller, Beat. 2022. "A fictional field case study to understand the genetic basis of host-fungal pathogen interactions using the wheat powdery mildew-wheat pathosystem." Journal of Biological Education. https://doi.org/10.1080/00219266.2022.2147574Article
Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade
Sotiropoulos, Alexandros G, Arango-Isaza, Epifanía, Ban, Tomohiro, Barbieri, Chiara, Bourras, Salim, Cowger, Christina, Czembor, Paweł C., Ben-David, Roi, Dinoor, Amos, Ellwood, Simon R., Graf, Johannes, Hatta, Koichi, Helguera, Marcelo, Sánchez-Martín, Javier, McDonald, Bruce A., Morgounov, Alexey I., Müller, Marion C., Shamanin, Vladimir, Shimizu, Kentaro K., ..., Wicker, Thomas. 2022. "Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade." Nature Communications. 13 (1). https://doi.org/10.1038/s41467-022-31975-0Article
Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat
Müller, Marion C., Kunz, Lukas, Schudel, Seraina, Lawson, Aaron W., Kammerecker, Sandrine, Isaksson, Jonatan, Wyler, Michele, Graf, Johannes, Sotiropoulos, Alexandro G.s, Praz, Coraline R., Manser, Beatrice, Wicker, Thomas, Bourras, Salim and Keller, Beat. 2022. "Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat." Proceedings of the National Academy of Sciences (PNAS). 119 (30). https://doi.org/10.1073/pnas.2108808119Article
A global analysis of matches and mismatches between human genetic and linguistic histories
Barbieri, Chiara, Blasi, Damian E., Arango-Isaza, Epifania, Sotiropoulos, Alexandros G., Hammarstrom, Harald, Wichmann, Soren, Greenhill, Simon J., Gray, Russell D., Forkel, Robert, Bickel, Balthasar and Shimizu, Kentaro K.. 2022. "A global analysis of matches and mismatches between human genetic and linguistic histories." Proceedings of the National Academy of Sciences (PNAS). 119 (47), p. e2122084119. https://doi.org/10.1073/pnas.2122084119Article
Population Structure of Pyrenophora teres f. teres Barley Pathogens From Different Continents
Dahanayaka, Buddhika A., Vaghefi, Niloofar, Knight, Noel L., Bakonyi, Jozsef, Prins, Renee, Seress, Diana, Snyman, Lisle and Martin, Anke. 2021. "Population Structure of Pyrenophora teres f. teres Barley Pathogens From Different Continents." Phytopathology: International Journal of the American Phytopathological Society. 111 (11), pp. 2118-2129. https://doi.org/10.1094/phyto-09-20-0390-rArticle
The role of internal transcribed spacer 2 secondary structures in classifying mycoparasitic Ampelomyces
Prahl, Rosa E., Khan, Shahjahan and Deo, Ravinesh C.. 2021. "The role of internal transcribed spacer 2 secondary structures in classifying mycoparasitic Ampelomyces." PLoS One. 16 (6), pp. 1-28. https://doi.org/10.1371/journal.pone.0253772Article
Relaxed predation theory: size, sex and brains matter
Edwards, Megan C., Hoy, Julia M., FitzGibbon, Sean I. and Murray, Peter J.. 2021. "Relaxed predation theory: size, sex and brains matter." Biological Reviews. 96 (1), pp. 153-161. https://doi.org/10.1111/brv.12611Article
Bioinformatics Data of Fungal Pathogens
Poudel, Barsha. Bioinformatics Data of Fungal Pathogens. Toowoomba. https://doi.org/10.26192/MEFW-EM74Dataset
Systematics and enzymatic activity of Foliar ascomycetes (Fungi) on Lepidozamia peroffskyana and Macrozamia lucida in Eastern Australia
Bartrop, Lachlan D.. 2021. Systematics and enzymatic activity of Foliar ascomycetes (Fungi) on Lepidozamia peroffskyana and Macrozamia lucida in Eastern Australia. Masters Thesis Master of Science (Research). University of Southern Queensland. https://doi.org/10.26192/q73ywMasters Thesis
Phytophthora species isolated from alpine and sub-alpine regions of Australia, including the description of two new species; Phytophthora cacuminis sp. nov and Phytophthora oreophila sp. nov
Khaliq, Ihsanul, Hardy, Giles E. St. J., McDougall, Keith L. and Burgess, Treena I.. 2019. "Phytophthora species isolated from alpine and sub-alpine regions of Australia, including the description of two new species; Phytophthora cacuminis sp. nov and Phytophthora oreophila sp. nov." Fungal Biology. 123, pp. 29-41. https://doi.org/10.1016/j.funbio.2018.10.006Article
Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae
Tanaka, Eiji, Shrestha, Bhushan and Shivas, Roger G.. 2020. "Commelinaceomyces, gen. nov., for four clavicipitaceous species misplaced in Ustilago that infect Commelinaceae." Mycologia. 112 (3), pp. 649-660. https://doi.org/10.1080/00275514.2020.1745524Article
Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera
Oeyen, Jan Philip, Baa-Puyoulet, Patrice, Benoit, Joshua B., Beukeboom, Leo W., Bornberg-Bauer, Erich, Buttstedt, Anja, Calevro, Federica, Cash, Elizabeth I., Chao, Hsu, Charles, Hubert, Chen, Mei-Ju May, Childers, Christopher, Cridge, Andrew G., Dearden, Peter, Dinh, Huyen, Doddapaneni, Harsha V., Dolan, Amanda, Donath, Alexander, Dowling, Daniel, ..., Niehuis, O.. 2020. "Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera." Genome Biology and Evolution. 12 (7), pp. 1099-1188. https://doi.org/10.1093/gbe/evaa106Article
Diversity of Moesziomyces (Ustilaginales, Ustilaginomycotina) on Echinochloa and Leersia (Poaceae)
Li, Ying-Ming, Shivas, Roger G., Li, Bao-Ju and Cai, Lei. 2019. "Diversity of Moesziomyces (Ustilaginales, Ustilaginomycotina) on Echinochloa and Leersia (Poaceae)." MycoKeys. 52, pp. 1-16. https://doi.org/10.3897/mycokeys.52.30461Article
Asexual and sexual morphs of Moesziomyces revisited
Kruse, Julia, Doehlemann, Gunther, Kemen, Eric and Thines, Marco. 2017. "Asexual and sexual morphs of Moesziomyces revisited." IMA Fungus: the global mycological journal. 8 (1), pp. 117-129. https://doi.org/10.5598/imafungus.2017.08.01.09Article
Ustilago species causing leaf-stripe smut revisited
Kruse, Julia, Dietrich, Wolfgang, Zimmermann, Horst, Klenke, Friedemann, Richter, Udo, Richter, Heidrun and Thines, Marco. 2018. "Ustilago species causing leaf-stripe smut revisited." IMA Fungus: the global mycological journal. 9 (1), pp. 49-73. https://doi.org/10.5598/imafungus.2018.09.01.05Article
Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus
Kruse, J., Piatek, M., Lutz, M. and Thines, M.. 2018. "Broad host range species in specialised pathogen groups should be treated with suspicion – a case study on Entyloma infecting Ranunculus." Persoonia. 41, pp. 175-201. https://doi.org/10.3767/persoonia.2018.41.09Article
The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae
Riess, Kai, Schon, Max E., Ziegler, Rebekka, Lutz, Matthias, Shivas, Roger G., Piatek, Marcin and Garnica, Sigisfredo. 2019. "The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae." Organisms Diversity and Evolution. 19 (1), pp. 13-30. https://doi.org/10.1007/s13127-018-0384-4Article
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata
Wingfield, Brenda D., Bills, Gerald F., Dong, Yang, Huang, Wenli, Nel, Wilma J., Swalarsk-Parry, Benedicta S., Vaghefi, Niloofar, Wilken, Markus P., An, Zhiqiang, de Beer, Z. Wilhelm, De Vos, Lieschen, Chen, Li, Duong, Tuan A., Gao, Yun, Hammerbacher, Almuth, Kikkert, Julie R., Li, Yan, Li, Huiying, Li, Kuan, ..., Zhang, Xiaoling. 2018. "Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata." IMA Fungus: the global mycological journal. 9 (1), pp. 199-223. https://doi.org/10.5598/imafungus.2018.09.01.13Article
A chromosome‐scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew
Müller, Marion C., Praz, Coraline R., Sotiropoulos, Alexandros G., Menardo, Fabrizio, Kunz, Lukas, Schudel, Seraina, Oberhänsli, Simone, Poretti, Manuel, Wehrli, Andreas and Bourras, Salim. 2019. "A chromosome‐scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew." New Phytologist. 221 (4), pp. 2176-2189. https://doi.org/10.1111/nph.15529Article
Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium
Tan, Yu Pei, Crous, Pedro W. and Shivas, Roger G.. 2018. "Cryptic species of Curvularia in the culture collection of the Queensland Plant Pathology Herbarium." MycoKeys. 35, pp. 1-25. https://doi.org/10.3897/mycokeys.35.25665Article
Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia
Doungsa-ard, C., McTaggart, A. R., Geering, A. D. W. and Shivas, R. G.. 2018. "Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia." Persoonia. 40, pp. 221-238. https://doi.org/10.3767/persoonia.2018.40.09Article
Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris
Vaghefi, Niloofar, Kikkert, Julie R., Hay, Frank S., Carver, Gavriela D., Koenick, Lori B., Bolton, Melvin D., Hanson, Linda E., Secor, Gary A. and Pethybridge, Sarah J.. 2018. "Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris." Fungal Biology. 122 (4), pp. 264-282. https://doi.org/10.1016/j.funbio.2018.01.008Article
Notes for genera: Ascomycota
Wijayawardene, Nalin N., Hyde, Kevin D., Rajeshkumar, Kunhiraman C., Hawksworth, David L., Madrid, Hugo, Kirk, Paul M., Braun, Uwe, Singh, Rajshree V., Crous, Pedro W., Kukwa, Martin, Lucking, Robert, Kurtzman, Cletus P., Yurkov, Andrey, Haelewaters, Danny, Aptroot, Andre, Lumbsch, H. Thorsten, Timdal, Einar, Ertz, Damien, Etayo, Javier, ..., Karunarathna, Samantha C.. 2017. "Notes for genera: Ascomycota." Fungal Diversity. 86 (1), pp. 1-594. https://doi.org/10.1007/s13225-017-0386-0Article
Ten new species of Macalpinomyces on Eriachne in northern Australia
Li, Ying-Ming, Shivas, Roger G., McTaggart, Alistair R., Zhao, Peng and Cai, Lei. 2017. "Ten new species of Macalpinomyces on Eriachne in northern Australia." Mycologia. 109 (3), pp. 408-421. https://doi.org/10.1080/00275514.2017.1330026Article
Structural and functional evolution of the TLR genes: a cross-species phylogenetic study and comparison with human oncogenes
Liu, Guang Bin. 2007. "Structural and functional evolution of the TLR genes: a cross-species phylogenetic study and comparison with human oncogenes." 2007 Bioinformatics Australia Conference. Brisbane, Australia 22 - 23 Oct 2007 Brisbane.Poster
Abscisic acid activates pathogenesis-related defense gene signaling in lentils
Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270Edited book (chapter)
New reports on dixenic associations between the symbionts of entomopathogenic nematodes, Photorhabdus and Xenorhabdus, and non-symbiotic bacteria
Kary, Naser Eivazian, Mohammadi, Davoud and Girling, Robbie. 2017. "New reports on dixenic associations between the symbionts of entomopathogenic nematodes, Photorhabdus and Xenorhabdus, and non-symbiotic bacteria." Journal of Crop Protection. 6 (4), pp. 497-511.Article
Optimising initial population density, growth time and nitrogen nutrition for assessing resistance of wheat cutivars to root-lesion nematode (Pratylenchus thornei)
Thompson, J. P., Clewett, T. G. and O'Reilly, M. M.. 2015. "Optimising initial population density, growth time and nitrogen nutrition for assessing resistance of wheat cutivars to root-lesion nematode (Pratylenchus thornei)." Australasian Plant Pathology. 44 (2), pp. 133-147. https://doi.org/10.1007/s13313-015-0347-6Article
Global diversity and geography of soil fungi
Tedersoo, Leho, Bahram, Mohammad, Polme, Sergei, Koljalg, Urmas, Yorou, Nourou S., Wijesundera, Ravi, Ruiz, Luis Villarreal, Vasco-Palacios, Aida M., Thu, Pham Quang, Suija, Ave, Smith, Matthew E., Sharp, Cathy, Saluveer, Erki, Saitta, Alessandro, Rosas, Miguel, Riit, Taavi, Ratkowsky, David, Pritsch, Karin, Poldmaa, Kadri, ..., Abarenkov, Kessy. 2014. "Global diversity and geography of soil fungi." Science. 346 (6213), pp. 1078-1087. https://doi.org/10.1126/science.1256688Article
Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures
Sheedy, J. G., McKay, A. C., Lewis, J., Vanstone, V. A., Fletcher, S., Kelly, A. and Thompson, J. P.. 2015. "Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures." Australasian Plant Pathology. 44 (2), pp. 175-182. https://doi.org/10.1007/s13313-014-0333-4Article
The missing link in the modern world
Goodall, Jane. 2009. "The missing link in the modern world." Kort, Pamela and Hollein, Max (ed.) Darwin: art and the search for origins. Cologne, Germany. Wienand Verlag. pp. 172-187Edited book (chapter)
Fusarium thapsinum is the dominant species associated with sorghum stalk rot in Queensland and northern New South Wales
Kelly, L., Tan, Y. P., Ryley, M. and Aitken, E.. 2011. "Fusarium thapsinum is the dominant species associated with sorghum stalk rot in Queensland and northern New South Wales." Tran-Nguyen, Lucy (ed.) 4th Asian Conference on Plant Pathology and the 18th Biennial Australasian Plant Pathology Society Conference (ACPP/APPS 2011): New Frontiers in Plant Pathology for Asia and Oceania. Darwin, Australia 26 - 29 Apr 2011 Toowoomba, Australia.Poster
Crop rotation for the management of root-lesion nematodes in the northern grain region of Australia
Owen, K., Clewett, T. and Thompson, J.. 2008. "Crop rotation for the management of root-lesion nematodes in the northern grain region of Australia." Hodda, Mike (ed.) 5th International Congress of Nematology (5ICN 2008): Nematodes Down Under. Brisbane, Australia 13 - 18 Jul 2008 Canberra, Australia.Paper
Phylogenetic relationships of graminicolous downy mildews based on cox2 sequence data
Thines, Marco, Goker, Markus, Telle, Sabine, Ryley, Malcolm, Mathur, Kusum, Narayana, Yaladabagi D., Spring, Otmar and Thakur, Ram P.. 2008. "Phylogenetic relationships of graminicolous downy mildews based on cox2 sequence data." Mycological Research. 112 (3), pp. 345-351. https://doi.org/10.1016/j.mycres.2007.10.010Article
Patterns of release of the secondary conidia of Claviceps africana, the sorghum ergot pathogen in Australia
Ryley, M. J. and Chakraborty, S.. 2008. "Patterns of release of the secondary conidia of Claviceps africana, the sorghum ergot pathogen in Australia." Plant Pathology. 57 (3), pp. 473-483. https://doi.org/10.1111/j.1365-3059.2007.01819.xArticle
Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species
Thompson, S. M., Tan, Y. P., Young, A. J., Neate, S. M., Aitken, E. A. B. and Shivas, R. G.. 2011. "Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species." Persoonia. 27, pp. 80-89. https://doi.org/10.3767/003158511X617110Article
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310401. Animal systematics and taxonomy
310402. Biogeography and phylogeography
310404. Evolution of developmental systems
310406. Evolutionary impacts of climate change
310407. Host-parasite interactions
310410. Phylogeny and comparative analysis
310411. Plant and fungus systematics and taxonomy