Centre for Systems Biology
Latest research outputs
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Comparative Study of Distance Functions for Nearest Neighbors
Walters-Williams, Janett and Li, Yan. 2010. "Comparative Study of Distance Functions for Nearest Neighbors." Elleithy, Khaled (ed.) 2008 International Conference on Systems, Computing Sciences and Software Engineering (SCSS 08). Online Netherlands. pp. 79-84 https://doi.org/10.1007/978-90-481-3660-5_14Paper
Comparison of epigenetic changes that have predisposed protein kinase genes to become oncogenes
Liu, Guang Bin, Pioth, Gabriel and Zheng, Qing Yin. 2009. "Comparison of epigenetic changes that have predisposed protein kinase genes to become oncogenes." Case Comprehensive Cancer Center Breast Cancer Retreat 2009. Cleveland, United States 05 - 06 Oct 2009 Cleveland, Ohio, United States.Poster
Comparison of extended and unscented Kalman filters applied to EEG signals
Walters-Williams, Janett and Li, Yan. 2010. "Comparison of extended and unscented Kalman filters applied to EEG signals." Li, Yan, Yang, Jiajia, Wen, Peng and Wu, Jinglong (ed.) 2010 IEEE/ICME International Conference on Complex Medical Engineering (ICME 2010). Gold Coast, Australia 13 - 15 Jul 2010 Brisbane, Australia. https://doi.org/10.1109/ICCME.2010.5558873Paper
Comprehensive analysis of prokaryotic mechanosensation genes: their characteristics in codon usage
Chen, Rong, Yan, Hong, Zhao, Kong-Nan, Martinac, Boris and Liu, Guang B.. 2007. "Comprehensive analysis of prokaryotic mechanosensation genes: their characteristics in codon usage." DNA Sequence. 18 (4), pp. 269-278. https://doi.org/10.1080/10425170601136564Article
Computational analysis of base composition pattern and promoter elements in the putative promoter regions in relation to expression profiles of 682 human genes on chromosome 22
Liu, Guang Bin, Jiang, Ya Fang, Yan, Hong and Zhao, Kong-Nan. 2006. "Computational analysis of base composition pattern and promoter elements in the putative promoter regions in relation to expression profiles of 682 human genes on chromosome 22." Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis. 17 (4), pp. 270-281. https://doi.org/10.1080/10425170600886136Article
Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'
Collard, B. C. Y., Jolley, R., Bovill, W. D., Grams, R. A., Wildermuth, G. B. and Sutherland, M. W.. 2006. "Confirmation of QTL mapping and marker validation for partial seedling resistance to crown rot in wheat line '2-49'." Australian Journal of Agricultural Research. 57 (9), pp. 967-973. https://doi.org/10.1071/AR05419Article
Consciousness and depth of anesthesia assessment based on Bayesian analysis of EEG signals
Nguyen-Ky, Tai, Wen, Peng (Paul) and Li, Yan. 2013. "Consciousness and depth of anesthesia assessment based on Bayesian analysis of EEG signals." IEEE Transactions on Biomedical Engineering. 60 (6), pp. 1488-1498. https://doi.org/10.1109/TBME.2012.2236649Article
Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification
Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W.. 2012. "Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification." Euphytica: international journal on plant breeding. 188 (3), pp. 325-332. https://doi.org/10.1007/s10681-012-0644-xArticle
Crown rot of winter cereals: integrating molecular studies and germplasm improvement
Sutherland, Mark W., Bovill, W. D., Eberhard, F. S., Lehmensiek, A., Herde, D. and Simpfendorfer, S.. 2009. "Crown rot of winter cereals: integrating molecular studies and germplasm improvement." Guest, David (ed.) 17th Biennial Australasian Plant Pathology Society Conference (APPS 2009): Plant Health Management: An Integrated Approach. Newcastle, Australia 29 Sep - 01 Oct 2009 Toowoomba, Australia.Paper
Curation of wheat maps to improve map accuracy and QTL detection
Lehmensiek, A., Eckermann, P. J., Verbyla, A. P., Appels, R., Sutherland, M. W. and Daggard, G. E.. 2005. "Curation of wheat maps to improve map accuracy and QTL detection." Australian Journal of Agricultural Research. 56 (12), pp. 1347-1354. https://doi.org/10.1071/AR05126Article
Current and emerging screening methods to identify post-head-emergence frost adaptation in wheat and barley
Frederiks, T. M., Christopher, J. T., Harvey, G. L., Sutherland, M. W. and Borrell, A. K.. 2012. "Current and emerging screening methods to identify post-head-emergence frost adaptation in wheat and barley." Journal of Experimental Botany. 63 (15), pp. 5405-5416. https://doi.org/10.1093/jxb/ers215Article
De-noising a raw EEG signal and measuring depth of anaesthesia for general anaesthesia patients
Nguyen-Ky, T., Wen, Peng, Li, Yan and Gray, Robert. 2010. "De-noising a raw EEG signal and measuring depth of anaesthesia for general anaesthesia patients." Li, Yan, Yang, Jiajia, Wen, Peng and Wu, Jinglong (ed.) 2010 IEEE/ICME International Conference on Complex Medical Engineering (ICME 2010). Gold Coast, Australia 13 - 15 Jul 2010 Brisbane, Australia. https://doi.org/10.1109/ICCME.2010.5558834Paper
Defense genes and pathways in Fusarium crown rot susceptible and partially-resistant Australian wheat seedlings responding to Fusarium culmorum infection
Petrisko, Jill E. and Windes, J. M.. 2008. "Defense genes and pathways in Fusarium crown rot susceptible and partially-resistant Australian wheat seedlings responding to Fusarium culmorum infection." APS 2008 Centennial Meeting. Minneapolis, United States 26 - 28 Jul 2008 American Phytopathological Society.Paper
Delegating revocations and authorizations
Wang, Hua and Cao, Jinli. 2008. "Delegating revocations and authorizations." ter Hofstede, A., Benatallah, B. and Paik, H. Y. (ed.) 5th International Conference on Business Process Management (BPM 2007) . Brisbane, Australia 24 - 28 Sep 2007 Germany. Springer. https://doi.org/10.1007/978-3-540-78238-4_29Paper
Describing the ultra violet light radiation environment of the grape bunch
Kennedy, Ursula J., Rhymer, Dylan, Parisi, Alfio and Learmonth, Robert P.. 2010. "Describing the ultra violet light radiation environment of the grape bunch." 14th Australian Wine Industry Technical Conference. Adelaide, Australia 03 - 08 Jul 2010 Adelaide, Australia.Poster
Detecting global outliers from large distributed databases
Zhang, Ji, Cao, Jie and Zhu, Xiaodong. 2012. "Detecting global outliers from large distributed databases." Liu, Yanbing, Yue, Shigang, Leung, Frank H. F., Zhao, Guofeng and Wang, Lipo (ed.) 9th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD 2012). Chongqing, China 29 - 31 May 2012 Piscataway, NJ. United States. https://doi.org/10.1109/FSKD.2012.6233948Paper
Development of a binocular rivalry testing system for large-scale psychiatric and genetic studies
Law, P. C. F., Paton, B., Liu, G. B., Ngo, T. T. and Miller, S. M.. 2011. "Development of a binocular rivalry testing system for large-scale psychiatric and genetic studies." 1st Scientific Meeting of Biological Psychiatry Australia. Melbourne, Australia 07 - 08 Nov 2011 Melbourne, Australia.Presentation
Development of a mini core collection from Sri Lankan traditional rice for flowering time variation
Rathnathunga, Udari, Senanayake, Gamini, Dissanayake, Nimal, Seneweera, Saman and Geekiyanage, Sudarshanee. 2016. "Development of a mini core collection from Sri Lankan traditional rice for flowering time variation." Australian Journal of Crop Science. 10 (9), pp. 1357-1367. https://doi.org/10.21475/ajcs.2016.10.09.p7865Article
Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population
Collard, B. C. Y., Grams, R. A., Bovill, W. D., Percy, C. D., Jolley, R., Lehmensiek, A., Wildermuth, G. B. and Sutherland, M. W.. 2005. "Development of molecular markers for crown rot resistance in wheat: mapping of QTLs for seedling resistance in a '2-49' x 'Janz' population." Plant Breeding. 124 (6), pp. 532-537. https://doi.org/10.1111/j.1439-0523.2005.01163.xArticle
Dichoptic viewing methods for binocular rivalry research: prospects for large-scale clinical and genetic studies
Law, Phillip C. F, Paton, Bryan K., Thomson, Richard H., Liu, Guang B., Miller, Steven M. and Ngo, Trung T.. 2013. "Dichoptic viewing methods for binocular rivalry research: prospects for large-scale clinical and genetic studies." Twin Research and Human Genetics. 16 (6), pp. 1033-1078. https://doi.org/10.1017/thg.2013.76Article
Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome
Akbari, Mona, Wenzl, Peter, Caig, Vanessa, Carling, Jason, Xia, Ling, Yang, Shiying, Uszynski, Grzegorz, Mohler, Volker, Lehmensiek, Anke, Kuchel, Haydn, Hayden, Mathew J., Howes, Neil, Sharp, Peter, Vaughan, Peter, Rathmell, Bill, Huttner, Eric and Kilian, Andrzej. 2006. "Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (8), pp. 1409-1420. https://doi.org/10.1007/s00122-006-0365-4Article
Editorial
Wang, Hua and Jia, Xiaohua. 2012. "Editorial." Journal of Software. 7 (11), pp. 2387-2388.Editorial
EEG analysis on skull conductivity perturbations using realistic head model
Bashar, Md. Rezaul, Li, Yan and Wen, Peng. 2009. "EEG analysis on skull conductivity perturbations using realistic head model." Wen, Peng, Li, Yuefeng, Polkowski, Lech, Yao, Yiyu, Tsumoto, Shusaku and Wang, Guoyin (ed.) 4th International Conference on Rough Sets and Knowledge Technology (RSKT 2009). Gold Coast, Australia 14 - 16 Jul 2009 Germany. Springer. https://doi.org/10.1007/978-3-642-02962-2_26Paper
EEG signal classification based on simple random sampling technique with least square support vector machine
Li, Yan and Wen, Peng. 2011. "EEG signal classification based on simple random sampling technique with least square support vector machine." International Journal of Biomedical Engineering and Technology. 7 (4), pp. 390-409. https://doi.org/10.1504/IJBET.2011.044417Article
Effects of hypothyroidism on myosin heavy chain composition and fibre types of fast skeletal muscles in a small marsupial, antechinus flavipes
Zhong, Wendy W. H., Withers, Kerry W. and Hoh, Joseph F. Y.. 2010. "Effects of hypothyroidism on myosin heavy chain composition and fibre types of fast skeletal muscles in a small marsupial, antechinus flavipes." Journal of Comparative Physiology B: biochemical, systemic, and environmental physiology. 180 (4), pp. 531-544. https://doi.org/10.1007/s00360-009-0431-8Article
Effects of six months of combined aerobic and resistance training for elderly patients with a long history of type 2 diabetes
Tan, Sijie, Li, Wei and Wang, Jianxiong. 2012. "Effects of six months of combined aerobic and resistance training for elderly patients with a long history of type 2 diabetes ." Journal of Sports Science and Medicine. 11 (3), pp. 495-501.Article
Effects of supervised exercise training at the intensity of maximal fat oxidation in overweight young women
Tan, Sijie, Wang, Xue and Wang, Jianxiong. 2012. "Effects of supervised exercise training at the intensity of maximal fat oxidation in overweight young women." Journal of Exercise Science and Fitness. 10 (2), pp. 64-69. https://doi.org/10.1016/j.jesf.2012.10.002Article
Effects of supplementation with L-proline or inositol on yeast membrane fluidity and ethanol tolerance
Ishmayana, Safri, Kennedy, Ursula and Learmonth, Robert. 2011. "Effects of supplementation with L-proline or inositol on yeast membrane fluidity and ethanol tolerance." 12th Conference on Methods and Applications of Fluorescence Spectroscopy, Imaging and Probes (MAF12). Strasbourg, France 11 - 14 Sep 2011 Strasbourg, France.Poster
Effects of white matter on EEG of multi-layered spherical head models
Bashar, Md. Rezaul, Li, Yan and Wen, Peng. 2008. "Effects of white matter on EEG of multi-layered spherical head models." Hoque, Aminul and Choudhury, Mohammad (ed.) 5th International Conference on Electrical and Computer Engineering (ICECE 2008). Dhaka, Bangladesh 20 - 22 Dec 2008 Bangladesh. https://doi.org/10.1109/ICECE.2008.4769173Paper
Effects on grape and wine quality of bunch thinning of Merlot under Queensland conditions. Final report
Kennedy, Ursula, Learmonth, Robert and Hassall, Tony. 2009. Effects on grape and wine quality of bunch thinning of Merlot under Queensland conditions. Final report. Adelaide, Australia. Grape and Wine Research and Development Corporation.Project report
Efficient and effective filtering of duplication detection in large database applications
Zhang, Ji. 2012. "Efficient and effective filtering of duplication detection in large database applications." Journal of Software. 7 (11), pp. 2424-2436. https://doi.org/10.4304/jsw.7.11.2424-2436Article
Elevated atmospheric [CO2] stimulates sugar accumulation and cellulose degradation rates of rice straw
Zhu, Chunwa, Xu, Xi, Wang, Dan, Zhu, Jianguo, Liu, Gang and Seneweera, Saman. 2016. "Elevated atmospheric [CO2] stimulates sugar accumulation and cellulose degradation rates of rice straw." GCB Bioenergy. 8 (3), pp. 579-587. https://doi.org/10.1111/gcbb.12277Article
Elevated carbon dioxide changes grain protein concentration and composition and compromises baking quality. A FACE study
Panozzo, J. F., Walker, C. K., Partington, D. L., Neumann, N. C., Tausz, M., Seneweera, S. and Fitzgerald, G. J.. 2014. "Elevated carbon dioxide changes grain protein concentration and composition and compromises baking quality. A FACE study." Journal of Cereal Science. 60 (3), pp. 461-470. https://doi.org/10.1016/j.jcs.2014.08.011Article
Enhancing yeast ethanol tolerance for biofuel production
Ishmayana, Safri, Kennedy, Ursula J. and Learmonth, Robert P.. 2009. "Enhancing yeast ethanol tolerance for biofuel production." Jiranek, Vladimir (ed.) 4th Australian Conference on Yeast Products and Discovery. Adelaide, South Australia 02 - 04 Dec 2009 Adelaide, Australia.Poster
Epileptogenic focus detection in intracranial EEG based on delay permutation entropy
Zhu, Guohun, Li, Yan, Wen, Peng (Paul), Wang, Shuaifang and Xi, Min. 2013. "Epileptogenic focus detection in intracranial EEG based on delay permutation entropy." Sun, Changming, Bednarz, Tomasz, Pham, Tuan D., Vallotton, Pascal and Wang, Dadong (ed.) International Symposium on Computational Models for Life Sciences (CMLS 2013). Sydney, Australia 27 - 29 Nov 2013 United States. AIP Publishing. https://doi.org/10.1063/1.4824993Paper
Estimation of mutual information: a survey
Walters-Williams, Janett and Li, Yan. 2009. "Estimation of mutual information: a survey." Wen, Peng, Li, Yuefeng, Polkowski, Lech, Yao, Yiyu, Tsumoto, Shusaku and Wang, Guoyin (ed.) 4th International Conference on Rough Sets and Knowledge Technology (RSKT 2009). Gold Coast, Australia 14 - 16 Jul 2009 Berlin, Germany. Springer. https://doi.org/10.1007/978-3-642-02962-2_49Paper
Estrogen-induced cholestasis: pathogenesis and therapeutic implications
Chen, Jiezhong, Zhao, Kong-Nan and Liu, Guang Bin. 2013. "Estrogen-induced cholestasis: pathogenesis and therapeutic implications." Hepato-Gastroenterology: current medical and surgical trends. 60 (126), pp. 1296-1299. https://doi.org/10.5754/hge121061Article
Evaluating functional connectivity in alcoholics based on maximal weight matching
Zhu, Guohun, Li, Yan and Wen, Peng. 2011. "Evaluating functional connectivity in alcoholics based on maximal weight matching." Journal of Advanced Computational Intelligence and Intelligent Informatics. 15 (9), pp. 1221-1227.Article
Exploring the potential for dual vaccination against Hepatitis B virus and Helicobacter pylori using a recombinant virus like particle
Kotiw, Michael, Olive, C., Johnson, Megan, Pandy, M., Fry, Scott Robert, Hazell, Stuart L., Netter, H. and Good, M.. 2006. "Exploring the potential for dual vaccination against Hepatitis B virus and Helicobacter pylori using a recombinant virus like particle." Sirtori, Patrizia (ed.) 6th National Congress of the Italian Society of Virology - a joint meeting with the Virus Group of the Society for General Microbiology (UK). Orvieto, Italy 18 - 20 Sep 2006 Italy.Poster
Fermentation performance of the yeast Saccharomyces cerevisiae in media with high sugar concentration
Ishmayana, Safri, Learmonth, Robert P. and Kennedy, Ursula J.. 2011. "Fermentation performance of the yeast Saccharomyces cerevisiae in media with high sugar concentration." 2nd International Seminar on Chemistry: Chemestry for a Better Future (ISC 2011). Bandung, Indonesia 24 - 25 Nov 2011 Sumedang, Indonesia.Paper
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