310505. Gene expression (incl. microarray and other genome-wide approaches)


Title310505. Gene expression (incl. microarray and other genome-wide approaches)
Parent3105. Genetics

Latest research outputs

Sort by Date Title
A comparative study of classification methods for microarray data analysis
Hu, Hong, Li, Jiuyong, Plank, Ashley, Wang, Hua and Daggard, Grant. 2006. "A comparative study of classification methods for microarray data analysis." Christen, Peter, Kennedy, Paul J., Li, Jiuyong, Simoff, Simeon J. and Williams, Graham J. (ed.) 5th Australasian Conference on Data Mining and Analystics (AusDM 2006). Sydney, Australia 29 - 30 Nov 2006 Canberra, Australia.

Paper

A maximally diversified multiple decision tree algorithm for microarray data classification
Hu, Hong, Li, Jiuyong, Wang, Hua, Daggard, Grant and Shi, Mingren. 2006. "A maximally diversified multiple decision tree algorithm for microarray data classification." Boden, Mikael and Bailey, Timothy (ed.) Workshop on Intelligent Systems for Bioinformatics (2006). Hobart, Australia 04 Dec 2006 Sydney, Australia.

Paper

A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis
Vaghefi, Niloofar, Mustafa, Barkat M., Dulal, Nabeen, Selby-Pham, Jamie, Taylor, Paul W. J. and Ford, Rebecca. 2013. "A novel pathogenesis-related protein (LcPR4a) from lentil, and its involvement in defence against Ascochyta lentis." Phytopathologia Mediterranea. 52 (1), pp. 192-201.

Article

A robust ensemble classification method analysis
Zhang, Zhongwei, Li, Jiuyong, Hu, Hong and Zhou, Hong. 2010. "A robust ensemble classification method analysis." Arabnia, Hamid R. (ed.) Advances in computational biology. New York, NY. United States. Springer. pp. 149-155

Edited book (chapter)

A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material
Poretti, Manuel, Praz, Coraline R, Sotiropoulos, Alexandros G. and Wicker, Thomas. 2023. "A survey of lineage‐specific genes in Triticeae reveals de novo gene evolution from genomic raw material." Plant Direct. 7 (3), p. e484. https://doi.org/10.1002/pld3.484

Article

Abscisic acid activates pathogenesis-related defense gene signaling in lentils
Ford, Rebecca, Tan, David, Vaghefi, Niloofar and Mustafa, Barkat. 2017. "Abscisic acid activates pathogenesis-related defense gene signaling in lentils." Pandey, Girdhar K. (ed.) Mechanism of plant hormone signaling under stress. United States. John Wiley & Sons. pp. 243-270

Edited book (chapter)

Anchor primer associated problems in differential display reverse transcription polymerase chain reaction
Chen, Yihua, Wang, Bin, Weining, Song and Daggard, Grant. 2004. "Anchor primer associated problems in differential display reverse transcription polymerase chain reaction." Analytical Biochemistry. 329 (1), pp. 145-147. https://doi.org/10.1016/j.ab.2004.02.030

Article

Changes in the leukocyte methylome and its effect on cardiovascular-related genes after exercise
Denham, Joshua, O'Brien, Brendan J., Marques, Francine Z. and Charchar, Fadi J.. 2015. "Changes in the leukocyte methylome and its effect on cardiovascular-related genes after exercise." Journal of Applied Physiology. 118 (4), pp. 475-488. https://doi.org/10.1152/japplphysiol.00878.2014

Article

Cloning of a novel insulin-regulated ghrelin transcript in prostate cancer
Seim, Inge, Lubik, Amy A., Lehman, Melanie L., Tomlinson, Nadine, Whiteside, Eliza J., Herington, Adrian C., Nelson, Colleen C. and Chopin, Lisa K.. 2013. "Cloning of a novel insulin-regulated ghrelin transcript in prostate cancer." Journal of Molecular Endocrinology. 50 (2), pp. 179-191. https://doi.org/10.1530/JME-12-0150

Article

Combined gene selection methods for microarray data analysis
Hu, Hong, Li, Jiuyong, Wang, Hua and Daggard, Grant. 2006. "Combined gene selection methods for microarray data analysis." Gabrys, Bogdan, Howlett, Robert J. and Jain, Lakhmi C. (ed.) 10th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES 2006). Bournemouth, United Kingdom 09 - 11 Oct 2006 Germany. Springer. https://doi.org/10.1007/11892960_117

Paper

Combining gene expression data and gene ontology with the use of a data mining tool
Petrus, Khaleel, Li, Jiuyong and Lopez, J.. 2005. "Combining gene expression data and gene ontology with the use of a data mining tool." Summer Symposium in Bioinformatics: Open Problems in Bioinformatics (BioInfoSummer 2005). Canberra, Australia 28 Nov - 02 Dec 2005 Australian National University (ANU).

Paper

Comparison of epigenetic changes that have predisposed protein kinase genes to become oncogenes
Liu, Guang Bin, Pioth, Gabriel and Zheng, Qing Yin. 2009. "Comparison of epigenetic changes that have predisposed protein kinase genes to become oncogenes." Case Comprehensive Cancer Center Breast Cancer Retreat 2009. Cleveland, United States 05 - 06 Oct 2009 Cleveland, Ohio, United States.

Poster

Cross-species comparison of CpG density in the promoter regions of protein kinase oncogenes
Pioth, Gabriel G., Zhao, Kong-Nan and Liu, Guang B.. 2015. "Cross-species comparison of CpG density in the promoter regions of protein kinase oncogenes." Bioengineering and Bioscience. 3 (3), pp. 29-38. https://doi.org/10.13189/bb.2015.030301

Article

Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome
Akbari, Mona, Wenzl, Peter, Caig, Vanessa, Carling, Jason, Xia, Ling, Yang, Shiying, Uszynski, Grzegorz, Mohler, Volker, Lehmensiek, Anke, Kuchel, Haydn, Hayden, Mathew J., Howes, Neil, Sharp, Peter, Vaughan, Peter, Rathmell, Bill, Huttner, Eric and Kilian, Andrzej. 2006. "Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (8), pp. 1409-1420. https://doi.org/10.1007/s00122-006-0365-4

Article

Epigenetic changes in leukocytes after 8 weeks of resistance exercise training
Denham, Joshua, Marques, Francine Z., Bruns, Emma L., O'Brien, Brendan J. and Charchar, Fadi J.. 2016. "Epigenetic changes in leukocytes after 8 weeks of resistance exercise training." European Journal of Applied Physiology. 116 (6), pp. 1245-1253. https://doi.org/10.1007/s00421-016-3382-2

Article

Exercise: putting action into our epigenome
Denham, Josh, Marques, Francine Z., O'Brien, Brendan J. and Charchar, Fadi J.. 2014. "Exercise: putting action into our epigenome." Sports Medicine. 44 (2), pp. 189-209. https://doi.org/10.1007/s40279-013-0114-1

Article

Expression and nucleotide sequence of the Clostridium acetobutylicum β-galactosidase gene cloned in Escherichia coli
Hancock Kerrie R., Rockman, Eva, Young, Carolyn A., Pearce, Lindsay, Maddox, Ian S. and Scott, Barry. 1991. "Expression and nucleotide sequence of the Clostridium acetobutylicum β-galactosidase gene cloned in Escherichia coli." Journal of Bacteriology. 173 (10), pp. 3084-3095. https://doi.org/10.1128/jb.173.10.3084-3095.1991

Article

Expression profiling in monozygotic twins discordant for bipolar disorder reveals dysregulation of the WNT signalling pathway
Matigan, N., Windus, L., Smith, H., Filippich, C., Pantelis, C., McGrath, J., Mowry, B. and Hayward, N.. 2007. "Expression profiling in monozygotic twins discordant for bipolar disorder reveals dysregulation of the WNT signalling pathway." Molecular Psychiatry. 12 (9), pp. 815-825. https://doi.org/10.1038/sj.mp.4001998

Article

Finding similar patterns in microarray data
Chen, Xiangsheng, Li, Jiuyong, Daggard, Grant and Huang, Xiaodi. 2005. "Finding similar patterns in microarray data." Zhang, Shichao and Jarvis, Ray (ed.) AI 2005: Advances in artificial intelligence. Berlin, Germany. Springer. pp. 1272-1276

Edited book (chapter)

Frost resistance in cereals after EAR emergence
Frederiks, Troy. 2009. Frost resistance in cereals after EAR emergence. PhD Thesis Doctor of Philosophy. University of Southern Queensland.

PhD Thesis

Genetic mapping in the Triticeae
Lehmensiek, Anke, Bovill, William, Wenzl, Peter, Langridge, Peter and Appels, Rudi. 2009. "Genetic mapping in the Triticeae." Feuillet, Catherine and Muehlbauer, Gary (ed.) Genetics and genomics of the Triticeae. New York, NY. United States. Springer. pp. 201-235

Edited book (chapter)

Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility
Diagram, Consortium, AGEN-T2D, Consortium, SAT2D, Consortium, MAT2D, Consortium, T2D-GENES, Consortium and Pinidiyapathirage, Janani M.. 2014. "Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility." Nature Genetics. 46 (3), pp. 234-244. https://doi.org/10.1038/ng.2897

Article

Meta-Data Analysis to Explore the Hub of the Hub-Genes That Influence SARS-CoV-2 Infections Highlighting Their Pathogenetic Processes and Drugs Repurposing
Mosharaf, Md. Parvez, Kibria, Md. Kaderi, Hossen, Md. Bayazid, Islam, Md. Ariful, Reza, Md. Selim, Mahumud, Rashidul Alam, Alam, Khorshed, Gow, Jeffrey and Mollah, Md. Nurul Haque. 2022. "Meta-Data Analysis to Explore the Hub of the Hub-Genes That Influence SARS-CoV-2 Infections Highlighting Their Pathogenetic Processes and Drugs Repurposing." Vaccines. 10 (8), pp. 1-22. https://doi.org/10.3390/vaccines10081248

Article

Molecular mechanisms of growth responses to elevated atmospheric carbon dioxide in wheat (Triticum aestivum L.)
Gamage, Dananjali Mekhala. 2018. Molecular mechanisms of growth responses to elevated atmospheric carbon dioxide in wheat (Triticum aestivum L.). PhD Thesis Doctor of Philosophy. University of southern Queensland. https://doi.org/10.26192/5f69868cdccdf

PhD Thesis

On the effectiveness of gene selection for microarray classification methods
Zhang, Zhongwei, Li, Jiuyong, Hu, Hong and Zhou, Hong. 2010. "On the effectiveness of gene selection for microarray classification methods." Nguyen, Ngoc Thanh, Le, Manh Thanh and Swiatek, Jerzy (ed.) 2nd Asian Conference on Intelligent Information and Database Systems (ACIIDS 2010). Hue City, Vietnam 24 - 26 Mar 2010 Heidelberg, Germany. https://doi.org/10.1007/978-3-642-12101-2_31

Paper

Prediction of Fly-rock using Gene Expression Programming and Teaching– learning-based Optimization Algorithm
Shamsi, R., Amin, Mohammad Saeed, Dehghani, Hesam, Bascompta, Marc, Jodeiri Shokri, Behshad and Entezam, Shima. 2022. "Prediction of Fly-rock using Gene Expression Programming and Teaching– learning-based Optimization Algorithm." Journal of Mining and Environment. 13 (2), pp. 391-406. https://doi.org/10.22044/jme.2022.11825.2171

Article

Resistance gene analogues of wheat: molecular genetic analysis of ESTs
McFadden, H. G., Lehmensiek, A. and Lagudah, E. S.. 2006. "Resistance gene analogues of wheat: molecular genetic analysis of ESTs." Theoretical and Applied Genetics: international journal of plant breeding research. 113 (6), pp. 987-1002. https://doi.org/10.1007/s00122-006-0358-3

Article

Semi-bipartite graph visualization for gene ontology networks
Xu, Kai, Williams, Rohan, Hong, Seok-Hee, Liu, Qing and Zhang, Ji. 2010. "Semi-bipartite graph visualization for gene ontology networks." Eppstein, D. and Gansner, E. R. (ed.) GD 2009: 17th International Symposium on Graph Drawing. Chicago, United States 22 - 25 Sep 2009 Heidelberg, Germany. Springer. https://doi.org/10.1007/978-3-642-11805-0_24

Paper

Small non-coding RNAs are altered by short-term sprint interval training in men
Denham, Joshua, Gray, Adrian J., Scott-Hamilton, John, Hagstrom, Amanda D. and Murphy, Aron J.. 2018. "Small non-coding RNAs are altered by short-term sprint interval training in men." Physiological Reports. 6 (7), pp. 1-10. https://doi.org/10.14814/phy2.13653

Article

Testing for frost tolerance in wheat (Triticum aestivum L.) transformed with a gene for antifreeze protein
Vickers, Joan, Khanna, Harjeet, Christopher, Jack, Frederiks, Troy, Stephen, John, Sutherland, Mark W. and Daggard, Grant. 2006. "Testing for frost tolerance in wheat (Triticum aestivum L.) transformed with a gene for antifreeze protein." Breeding for Success: Diversity in Action (2006). Christchurch, New Zealand 18 - 21 Apr 2006 New Zealand.

Paper

The comparative genomics of monotremes, marsupials, and pinnipeds: models to examine the functions of milk proteins
Sharp, Julie A., Watt, Ashalyn, Bisana, Swathi, Modepalli, Vengama, Wanyonyi, Stephen, Kumar, Amit, Kwek, Joly, Collins, Rod, Lefevre, Christopher and Nicholas, Kevin R.. 2014. "The comparative genomics of monotremes, marsupials, and pinnipeds: models to examine the functions of milk proteins ." Singh, Harjinder, Boland, Mike and Thompson, Abby (ed.) Milk proteins: from expression to food. Amsterdam, The Netherlands. Elsevier. pp. 75-112

Edited book (chapter)

The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression
Birney, Genevieve, Liu, Guang B. and Daggard, Grant. 2010. "The correlation between the mutation of protein kinase genes and the clinical characteristics of breast cancer progression." ASMR Queensland Postgraduate Student Conference 2010. St Lucia, Australia 02 Jun 2010 St. Lucia, Australia.

Poster

The tammar wallaby: a model system to examine domain-specific delivery of milk protein bioactives
Nicholas, Kevin, Sharp, Julie, Watt, Ashalyn, Wanyonyi, Stephen, Crowley, Tamsyn, Gillespie, Meagan and Lefevre, Christophe. 2012. "The tammar wallaby: a model system to examine domain-specific delivery of milk protein bioactives." Seminars in Cell and Developmental Biology. 23 (5), pp. 547-556. https://doi.org/10.1016/j.semcdb.2012.03.016

Article

Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation
Kato, Norihiro, Loh, Marie, Takeuchi, Fumihiko, Verweij, Niek, Wang, Xu, Zhang, Weihua, Kelly, Tanika N., Saleheen, Danish, Lehne, Benjamin, Leach, Irene Mateo and Pinidiyapathirage, Mohitha J.. 2015. "Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation." Nature Genetics. 47 (11), pp. 1282-1293. https://doi.org/10.1038/ng.3405

Article

Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea
Channale, Sonal, Kalavikatte, Danamma, Thompson, John P., Kudapa, Himabindu, Bajaj, Prasad, Varshney, Rajeev K., Zwart, Rebecca S. and Thudi, Manhendar. 2021. "Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea." Scientific Reports. 11 (1), pp. 1-11. https://doi.org/10.1038/s41598-021-96906-3

Article

People